Wall clock time and date at job start Wed Apr 1 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47296 * 2 1 4 4 C 1.53004 * 109.46821 * 240.00455 * 2 1 3 5 5 N 1.46499 * 109.47051 * 185.00100 * 4 2 1 6 6 C 1.34782 * 120.00406 * 179.97438 * 5 4 2 7 7 O 1.21591 * 119.99323 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00403 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47005 * 179.97438 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.97666 * 10 9 8 12 12 C 1.38280 * 120.13484 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.07150 * 359.67534 * 12 11 10 14 14 C 1.38861 * 119.92830 * 0.59673 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.69892 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96947 * 89.99513 * 10 9 8 25 25 N 1.46897 * 109.47435 * 120.00533 * 2 1 3 26 26 C 1.46904 * 110.99938 * 58.95002 * 25 2 1 27 27 C 1.46903 * 110.99847 * 295.00093 * 25 2 1 28 28 C 1.53007 * 117.49470 * 248.74283 * 27 25 2 29 29 C 1.53002 * 117.49671 * 180.08421 * 27 25 2 30 30 H 1.09007 * 109.47035 * 299.99416 * 1 2 3 31 31 H 1.08998 * 109.47496 * 59.99333 * 1 2 3 32 32 H 1.09006 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47494 * 65.00078 * 4 2 1 34 34 H 1.09005 * 109.47313 * 304.99556 * 4 2 1 35 35 H 0.97009 * 120.00113 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99467 * 359.97438 * 8 6 5 37 37 H 1.08993 * 109.47130 * 59.99768 * 9 8 6 38 38 H 1.09003 * 109.47080 * 299.99631 * 9 8 6 39 39 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 40 40 H 1.08007 * 119.96121 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03709 * 180.32387 * 13 12 11 42 42 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 43 43 H 1.08001 * 120.03594 * 0.02562 * 24 10 9 44 44 H 1.08999 * 109.47306 * 60.00304 * 26 25 2 45 45 H 1.09002 * 109.47217 * 180.02562 * 26 25 2 46 46 H 1.09000 * 109.47305 * 300.00078 * 26 25 2 47 47 H 1.08994 * 115.55085 * 34.41668 * 27 25 2 48 48 H 1.08998 * 117.49663 * 359.97438 * 28 27 25 49 49 H 1.08995 * 117.49126 * 145.02178 * 28 27 25 50 50 H 1.09002 * 117.49802 * 214.97208 * 29 27 25 51 51 H 1.09000 * 117.50135 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.1729 -1.4291 -2.1909 7 8 3.5681 -1.8860 -3.1416 8 7 5.5160 -1.5263 -2.1367 9 6 6.2475 -2.1810 -3.2242 10 6 7.7238 -2.1567 -2.9225 11 6 8.4991 -1.0944 -3.3513 12 6 9.8542 -1.0687 -3.0769 13 6 10.4364 -2.1011 -2.3676 14 6 9.6618 -3.1716 -1.9407 15 8 10.2323 -4.1906 -1.2487 16 6 11.5735 -4.1633 -1.1132 17 1 12.1356 -3.3148 -1.4746 18 6 12.2311 -5.2244 -0.5097 19 7 13.5398 -5.1978 -0.3780 20 14 11.2590 -6.6921 0.1148 21 1 11.1406 -7.7036 -0.9660 22 1 11.9602 -7.2912 1.2787 23 1 9.9035 -6.2484 0.5283 24 6 8.3011 -3.1949 -2.2187 25 7 2.0197 -0.6926 1.1993 26 6 1.5282 -2.0762 1.2458 27 6 1.6487 0.0390 2.4180 28 6 2.7745 0.7023 3.2141 29 6 2.0882 -0.5530 3.7587 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 -2.1371 34 1 1.6053 -1.7198 -1.2953 35 1 3.9824 -0.4622 -0.4320 36 1 5.9984 -1.1621 -1.3780 37 1 6.0592 -1.6523 -4.1585 38 1 5.9123 -3.2140 -3.3172 39 1 8.0453 -0.2835 -3.9015 40 1 10.4570 -0.2381 -3.4134 41 1 11.4938 -2.0779 -2.1491 42 1 13.9998 -5.9400 0.0445 43 1 7.6954 -4.0243 -1.8848 44 1 1.8761 -2.6151 0.3645 45 1 1.9053 -2.5657 2.1437 46 1 0.4384 -2.0743 1.2638 47 1 0.6867 0.5504 2.3849 48 1 3.7904 0.5954 2.8337 49 1 2.5530 1.6499 3.7049 50 1 1.4156 -0.4305 4.6076 51 1 2.6522 -1.4855 3.7364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113616424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:46 Heat of formation + Delta-G solvation = -14.433906 kcal Electronic energy + Delta-G solvation = -29732.702544 eV Core-core repulsion = 25633.229863 eV Total energy + Delta-G solvation = -4099.472681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23497 -40.80512 -39.89463 -38.59491 -36.87486 -35.66660 -34.63409 -34.44076 -32.22231 -31.26247 -30.89638 -27.96700 -27.23251 -27.07364 -26.09722 -23.32394 -23.12814 -22.55467 -22.27011 -21.83850 -20.44841 -19.78513 -19.37187 -18.67189 -17.94197 -17.43543 -16.88300 -16.79945 -16.36845 -16.13681 -15.86228 -15.71956 -15.57718 -15.50070 -15.31900 -14.84498 -14.68816 -14.51657 -14.23805 -14.12055 -13.82587 -13.74339 -13.55264 -13.30761 -13.09753 -13.05723 -12.74635 -12.57835 -12.46057 -12.41776 -12.35798 -12.16214 -11.93972 -11.70945 -11.39407 -11.31128 -11.28928 -11.04426 -10.91379 -10.32208 -9.79492 -9.68181 -9.24360 -9.11555 -8.49927 -6.22424 0.34973 0.65754 1.31551 1.35011 1.51439 1.86056 2.22112 2.27605 2.73939 2.79567 2.92312 2.99378 3.13163 3.49093 3.75255 3.78873 4.03186 4.07117 4.08021 4.12931 4.27458 4.29553 4.31940 4.35410 4.43883 4.51259 4.61717 4.62882 4.65898 4.70408 4.75919 4.78585 4.82332 4.85286 4.94658 5.05300 5.08894 5.17014 5.20040 5.28924 5.35249 5.37656 5.47552 5.58609 5.64532 5.70255 5.75510 5.89811 6.04486 6.07053 6.17628 6.20482 6.84717 7.14931 7.58977 7.63887 8.61509 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002189 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.931538 B =12786.192086 C =14206.892866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 H 0.099 0.901 4 C 0.149 3.851 5 N -0.723 5.723 6 C 0.700 3.300 7 O -0.639 6.639 8 N -0.731 5.731 9 C 0.194 3.806 10 C -0.059 4.059 11 C -0.157 4.157 12 C -0.074 4.074 13 C -0.228 4.228 14 C 0.119 3.881 15 O -0.245 6.245 16 C -0.397 4.397 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.268 1.268 23 H -0.263 1.263 24 C -0.169 4.169 25 N -0.513 5.513 26 C 0.022 3.978 27 C 0.000 4.000 28 C -0.164 4.164 29 C -0.177 4.177 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.412 0.588 36 H 0.407 0.593 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.110 0.890 42 H 0.284 0.716 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.105 0.895 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.426 14.278 4.229 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 H 0.117 0.883 4 C 0.024 3.976 5 N -0.378 5.378 6 C 0.400 3.600 7 O -0.522 6.522 8 N -0.386 5.386 9 C 0.071 3.929 10 C -0.060 4.060 11 C -0.176 4.176 12 C -0.092 4.092 13 C -0.247 4.247 14 C 0.070 3.930 15 O -0.153 6.153 16 C -0.474 4.474 17 H 0.101 0.899 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.189 4.189 25 N -0.237 5.237 26 C -0.126 4.126 27 C -0.109 4.109 28 C -0.201 4.201 29 C -0.214 4.214 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.248 0.752 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.058 0.942 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.123 0.877 50 H 0.123 0.877 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.386 13.545 3.518 30.754 hybrid contribution 0.226 -0.549 0.971 1.138 sum -27.160 12.996 4.489 30.442 Atomic orbital electron populations 1.22336 0.95199 1.02825 1.03555 1.21894 0.94288 0.98524 0.88248 0.88333 1.21271 0.78624 1.00224 0.97444 1.44838 1.07667 1.62279 1.23065 1.16087 0.81791 0.79109 0.82989 1.90885 1.68760 1.56165 1.36369 1.45045 1.04637 1.63276 1.25686 1.19845 0.85287 0.97959 0.89852 1.19464 0.94817 0.93958 0.97732 1.21036 0.93211 0.99271 1.04106 1.21143 0.95511 0.97002 0.95514 1.21399 1.00588 0.96741 1.05973 1.19567 0.93313 0.88221 0.91877 1.83521 1.22622 1.43333 1.65838 1.20706 0.78888 1.07049 1.40722 0.89860 1.25240 0.96069 1.00797 0.96655 1.69723 1.08120 1.34257 1.44183 0.85257 0.78963 0.78204 0.78549 1.19279 1.19245 1.18770 1.20267 0.91406 1.01744 1.05442 1.61940 1.58844 1.02045 1.00865 1.22390 0.98590 0.89303 1.02294 1.22534 0.97938 1.02526 0.87862 1.23111 0.97715 0.96810 1.02497 1.23089 1.04072 0.98178 0.96064 0.91098 0.90741 0.92217 0.91448 0.92886 0.75173 0.75717 0.89936 0.91843 0.83332 0.83784 0.87175 0.90601 0.86093 0.92294 0.91509 0.94233 0.87984 0.89048 0.87696 0.87702 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.58 71.98 0.62 -0.91 16 2 C 0.08 0.87 2.51 44.91 0.11 0.98 16 3 H 0.10 0.99 8.13 -2.39 -0.02 0.97 16 4 C 0.15 2.40 4.69 86.38 0.40 2.80 16 5 N -0.72 -13.37 5.39 -478.52 -2.58 -15.95 16 6 C 0.70 17.87 8.57 179.05 1.53 19.41 16 7 O -0.64 -21.52 16.34 -4.00 -0.07 -21.58 16 8 N -0.73 -16.95 5.55 -482.30 -2.68 -19.62 16 9 C 0.19 5.00 5.80 85.63 0.50 5.50 16 10 C -0.06 -1.73 5.25 -19.88 -0.10 -1.84 16 11 C -0.16 -4.29 9.70 22.30 0.22 -4.07 16 12 C -0.07 -2.33 10.04 22.25 0.22 -2.10 16 13 C -0.23 -9.48 9.17 22.39 0.21 -9.28 16 14 C 0.12 5.38 6.65 22.58 0.15 5.53 16 15 O -0.25 -13.11 8.59 -22.74 -0.20 -13.30 16 16 C -0.40 -23.06 9.95 67.92 0.68 -22.38 16 17 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 18 C 0.01 0.63 5.49 84.83 0.47 1.09 16 19 N -0.92 -54.66 13.96 21.61 0.30 -54.36 16 20 Si 0.97 45.33 28.62 68.60 1.96 47.30 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.17 -6.25 9.65 22.39 0.22 -6.03 16 25 N -0.51 -6.32 4.34 -871.79 -3.78 -10.10 16 26 C 0.02 0.30 8.67 127.69 1.11 1.40 16 27 C 0.00 0.00 5.03 44.92 0.23 0.22 16 28 C -0.16 -1.77 10.46 30.62 0.32 -1.45 16 29 C -0.18 -1.93 9.73 30.62 0.30 -1.64 16 30 H 0.07 0.51 6.34 -2.38 -0.02 0.49 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.58 6.39 -2.38 -0.02 0.56 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.00 6.70 -2.38 -0.02 0.99 16 35 H 0.41 6.33 8.15 -92.70 -0.76 5.58 16 36 H 0.41 8.17 8.48 -92.71 -0.79 7.38 16 37 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 38 H 0.06 1.77 8.09 -2.39 -0.02 1.75 16 39 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 42 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 44 H 0.06 0.98 6.44 -2.39 -0.02 0.96 16 45 H 0.07 0.93 6.76 -2.39 -0.02 0.92 16 46 H 0.04 0.47 6.28 -2.39 -0.01 0.45 16 47 H 0.10 0.90 6.27 -2.39 -0.01 0.89 16 48 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.09 1.17 7.26 -2.39 -0.02 1.16 16 Total: -1.00 -69.61 411.67 -0.45 -70.06 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.57 Total: 30.33 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 7.16 Total: -12.77 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -8.74 Total: -100.03 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.26 Total: -34.89 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.96 Total: 47.30 kcal Total: -69.61 -0.45 -70.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113616424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.624 kcal (2) G-P(sol) polarization free energy of solvation -69.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds