Wall clock time and date at job start Wed Apr 1 2020 06:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46715 * 2 1 4 4 C 1.39837 * 119.99958 * 269.99715 * 3 2 1 5 5 C 1.38922 * 119.99888 * 5.15768 * 4 3 2 6 6 C 1.38029 * 119.99994 * 179.72420 * 5 4 3 7 7 C 1.38933 * 119.99427 * 0.57243 * 6 5 4 8 8 N 1.39895 * 119.99670 * 179.68167 * 7 6 5 9 9 C 1.34777 * 120.00090 * 215.17806 * 8 7 6 10 10 O 1.21392 * 119.99621 * 355.55819 * 9 8 7 11 11 C 1.49324 * 120.00367 * 175.56238 * 9 8 7 12 12 O 1.21366 * 119.99405 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99885 * 179.97438 * 11 9 8 14 14 C 1.46497 * 119.99686 * 180.02562 * 13 11 9 15 15 H 1.09001 * 109.47423 * 325.00222 * 14 13 11 16 16 C 1.53002 * 109.47532 * 84.99855 * 14 13 11 17 17 C 1.50701 * 109.46968 * 204.99946 * 14 13 11 18 18 H 1.07994 * 120.00265 * 0.02562 * 17 14 13 19 19 C 1.37887 * 120.00003 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99984 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99931 * 0.02562 * 19 17 14 22 22 H 1.48498 * 109.47430 * 89.99597 * 21 19 17 23 23 H 1.48500 * 109.47203 * 210.00014 * 21 19 17 24 24 H 1.48510 * 109.47110 * 329.99939 * 21 19 17 25 25 C 1.38931 * 120.00104 * 359.70342 * 7 6 5 26 26 C 1.38020 * 119.99889 * 359.97438 * 25 7 6 27 27 C 1.46501 * 120.00027 * 89.99982 * 3 2 1 28 28 C 1.53001 * 109.46839 * 295.19643 * 27 3 2 29 29 C 1.52995 * 109.47274 * 55.19586 * 27 3 2 30 30 H 1.09007 * 109.47167 * 60.00417 * 1 2 3 31 31 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47812 * 300.00228 * 1 2 3 33 33 H 1.08993 * 109.47106 * 119.99561 * 2 1 3 34 34 H 1.08995 * 109.47418 * 240.00406 * 2 1 3 35 35 H 1.07994 * 119.99855 * 359.97438 * 5 4 3 36 36 H 1.07993 * 119.99925 * 180.27545 * 6 5 4 37 37 H 0.97000 * 120.00026 * 35.16858 * 8 7 6 38 38 H 0.96992 * 120.00085 * 359.97438 * 13 11 9 39 39 H 1.08999 * 109.47123 * 300.00605 * 16 14 13 40 40 H 1.09001 * 109.46467 * 59.99781 * 16 14 13 41 41 H 1.08994 * 109.47129 * 179.97438 * 16 14 13 42 42 H 0.96994 * 119.99962 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99481 * 179.97438 * 25 7 6 44 44 H 1.07996 * 119.99898 * 180.02562 * 26 25 7 45 45 H 1.08997 * 109.47094 * 175.19660 * 27 3 2 46 46 H 1.08997 * 109.47264 * 60.00121 * 28 27 3 47 47 H 1.09007 * 109.46781 * 180.02562 * 28 27 3 48 48 H 1.08995 * 109.47074 * 299.99933 * 28 27 3 49 49 H 1.09004 * 109.46815 * 60.00223 * 29 27 3 50 50 H 1.08998 * 109.47348 * 179.97438 * 29 27 3 51 51 H 1.09004 * 109.47095 * 300.00478 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2513 2.0405 -1.2110 5 6 1.9193 1.4255 -2.4117 6 6 2.1441 2.0785 -3.6068 7 6 2.7133 3.3459 -3.6095 8 7 2.9473 4.0049 -4.8210 9 6 4.0320 4.7925 -4.9612 10 8 4.7621 4.9945 -4.0127 11 6 4.3357 5.4167 -6.2833 12 8 3.6054 5.2152 -7.2315 13 7 5.4201 6.2047 -6.4233 14 6 5.7176 6.8175 -7.7202 15 1 5.4308 6.1341 -8.5194 16 6 4.9324 8.1233 -7.8596 17 6 7.1938 7.1068 -7.8122 18 1 7.8451 6.8586 -6.9874 19 6 7.7129 7.6874 -8.9500 20 7 9.0011 7.9394 -9.0305 21 14 6.5864 8.1162 -10.3771 22 1 6.0739 9.4992 -10.2050 23 1 7.3441 8.0239 -11.6509 24 1 5.4455 7.1660 -10.4099 25 6 3.0506 3.9584 -2.4090 26 6 2.8197 3.3081 -1.2137 27 6 2.2623 2.0719 1.2687 28 6 0.9394 2.2459 2.0174 29 6 3.2264 1.2454 2.1221 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.4816 0.4383 -2.4098 36 1 1.8819 1.6023 -4.5399 37 1 2.3290 3.8950 -5.5603 38 1 6.0030 6.3666 -5.6652 39 1 3.8648 7.9141 -7.7929 40 1 5.2193 8.8067 -7.0604 41 1 5.1542 8.5794 -8.8243 42 1 9.3664 8.3475 -9.8311 43 1 3.4935 4.9434 -2.4112 44 1 3.0815 3.7845 -0.2804 45 1 2.6996 3.0507 1.0714 46 1 0.5022 1.2672 2.2148 47 1 1.1210 2.7602 2.9612 48 1 0.2526 2.8347 1.4095 49 1 4.1689 1.1215 1.5886 50 1 3.4084 1.7595 3.0658 51 1 2.7892 0.2666 2.3194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122881449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:04 Heat of formation + Delta-G solvation = -24.589845 kcal Electronic energy + Delta-G solvation = -30041.155451 eV Core-core repulsion = 25941.242375 eV Total energy + Delta-G solvation = -4099.913076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.80199 -39.82558 -38.49166 -37.27939 -35.42106 -34.49650 -33.25969 -32.40930 -31.21686 -30.66536 -30.04879 -27.96846 -27.53741 -25.32629 -24.73879 -24.05302 -22.58464 -22.10199 -20.76780 -19.95392 -19.71268 -18.65736 -18.14900 -17.09248 -16.66617 -16.13229 -15.74492 -15.60491 -15.22694 -14.99788 -14.71368 -14.38110 -14.33804 -14.18864 -13.86748 -13.63338 -13.48715 -13.24207 -13.13259 -13.01585 -12.94417 -12.76153 -12.55213 -12.29742 -12.25954 -12.12617 -11.91550 -11.66661 -11.49924 -11.37925 -11.20104 -11.12796 -10.87304 -10.83632 -10.51505 -10.23529 -9.71998 -9.30407 -9.23001 -9.16764 -8.96405 -8.81491 -8.35324 -7.20213 -6.23119 -4.26849 1.24258 1.36938 1.91728 2.68868 2.82110 3.21121 3.33366 3.36144 3.55545 3.83461 4.07908 4.28408 4.32495 4.52532 4.64983 4.72277 4.86239 4.92179 4.95037 4.97285 5.02725 5.10500 5.11352 5.17627 5.26206 5.32386 5.36514 5.42857 5.47737 5.51885 5.56154 5.67663 5.84166 5.88902 5.92724 6.02297 6.13111 6.23223 6.27906 6.34204 6.44674 6.46229 6.73157 6.80195 6.97678 7.09497 7.12235 7.26052 7.34322 7.40409 7.83858 8.10193 8.40038 8.55171 8.77672 9.35380 10.88851 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.001847 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.791302 B =15159.482002 C =15647.709040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.119 3.881 3 N -0.624 5.624 4 C 0.206 3.794 5 C -0.180 4.180 6 C -0.091 4.091 7 C 0.085 3.915 8 N -0.646 5.646 9 C 0.507 3.493 10 O -0.507 6.507 11 C 0.497 3.503 12 O -0.538 6.538 13 N -0.662 5.662 14 C 0.234 3.766 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.538 4.538 18 H 0.083 0.917 19 C 0.079 3.921 20 N -0.889 5.889 21 Si 0.886 3.114 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.262 1.262 25 C -0.068 4.068 26 C -0.182 4.182 27 C 0.140 3.860 28 C -0.166 4.166 29 C -0.165 4.165 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.419 0.581 38 H 0.409 0.591 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.268 0.732 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.163 -15.047 21.439 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.005 4.005 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.203 4.203 6 C -0.112 4.112 7 C -0.010 4.010 8 N -0.293 5.293 9 C 0.289 3.711 10 O -0.381 6.381 11 C 0.276 3.724 12 O -0.417 6.417 13 N -0.311 5.311 14 C 0.132 3.868 15 H 0.071 0.929 16 C -0.221 4.221 17 C -0.576 4.576 18 H 0.101 0.899 19 C -0.125 4.125 20 N -0.525 5.525 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.186 1.186 25 C -0.089 4.089 26 C -0.204 4.204 27 C 0.036 3.964 28 C -0.224 4.224 29 C -0.223 4.223 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.257 0.743 38 H 0.244 0.756 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.948 -15.009 21.420 31.721 hybrid contribution -0.487 0.295 -0.820 0.999 sum -18.436 -14.714 20.599 31.316 Atomic orbital electron populations 1.22424 0.96631 1.01798 1.02922 1.21320 0.93856 0.82793 1.02499 1.46628 1.71803 1.12786 1.02334 1.17836 0.94133 0.91833 0.85711 1.20410 1.08293 1.01084 0.90465 1.20685 1.00080 0.92236 0.98206 1.17553 1.05309 0.92899 0.85205 1.43087 1.25449 1.46134 1.14619 1.20693 0.80815 0.79689 0.89862 1.90730 1.48098 1.58739 1.40542 1.19768 0.83474 0.81373 0.87764 1.90720 1.48882 1.61813 1.40297 1.46114 1.24191 1.45061 1.15727 1.19303 0.96179 0.90621 0.80745 0.92856 1.22465 0.98569 0.99805 1.01232 1.21003 0.89816 1.42524 1.04257 0.89874 1.24828 0.95082 0.94544 0.98027 1.69860 1.11709 1.42075 1.28867 0.86878 0.80724 0.79389 0.81515 1.20193 1.22029 1.18634 1.21081 0.97375 1.00309 0.90130 1.20596 1.06433 0.95186 0.98194 1.21019 0.95232 0.96735 0.83390 1.22335 0.97688 1.02171 1.00228 1.22192 0.99677 1.00505 0.99896 0.92218 0.92174 0.91926 0.90885 0.90844 0.85761 0.85648 0.74320 0.75572 0.94362 0.92456 0.93066 0.92175 0.84302 0.85709 0.89025 0.92075 0.91886 0.92243 0.92056 0.91585 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 9.95 37.16 0.37 -0.61 16 2 C 0.12 0.72 5.31 -4.04 -0.02 0.70 16 3 N -0.62 -4.84 2.54 -164.13 -0.42 -5.26 16 4 C 0.21 2.07 6.54 -83.70 -0.55 1.52 16 5 C -0.18 -1.76 9.12 -39.40 -0.36 -2.12 16 6 C -0.09 -0.98 9.96 -39.40 -0.39 -1.38 16 7 C 0.09 1.10 6.30 -83.66 -0.53 0.58 16 8 N -0.65 -8.91 5.32 -10.26 -0.05 -8.96 16 9 C 0.51 8.49 7.73 -11.64 -0.09 8.40 16 10 O -0.51 -9.17 13.91 5.46 0.08 -9.09 16 11 C 0.50 9.57 7.85 -11.65 -0.09 9.48 16 12 O -0.54 -11.22 16.14 5.48 0.09 -11.13 16 13 N -0.66 -13.71 5.06 -55.40 -0.28 -13.99 16 14 C 0.23 5.56 2.15 -69.08 -0.15 5.41 16 15 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 16 C -0.16 -3.57 8.96 37.16 0.33 -3.23 16 17 C -0.54 -14.57 9.31 -34.44 -0.32 -14.89 16 18 H 0.08 2.40 7.98 -52.49 -0.42 1.98 16 19 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 20 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 21 Si 0.89 21.38 24.37 -169.99 -4.14 17.24 16 22 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.26 -6.20 6.53 56.52 0.37 -5.84 16 25 C -0.07 -0.90 8.69 -39.40 -0.34 -1.24 16 26 C -0.18 -2.02 9.31 -39.41 -0.37 -2.39 16 27 C 0.14 0.92 3.20 -67.93 -0.22 0.70 16 28 C -0.17 -0.92 8.43 37.16 0.31 -0.60 16 29 C -0.16 -0.92 9.07 37.16 0.34 -0.59 16 30 H 0.06 0.39 8.07 -51.93 -0.42 -0.02 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.35 5.42 -51.93 -0.28 0.06 16 33 H 0.07 0.37 6.19 -51.93 -0.32 0.05 16 34 H 0.07 0.45 6.42 -51.93 -0.33 0.12 16 35 H 0.12 0.98 6.23 -52.49 -0.33 0.65 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.42 5.09 8.30 -40.82 -0.34 4.76 16 38 H 0.41 8.05 8.01 -40.82 -0.33 7.73 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.14 2.00 6.23 -52.49 -0.33 1.67 16 44 H 0.13 1.20 5.73 -52.49 -0.30 0.89 16 45 H 0.09 0.65 5.31 -51.93 -0.28 0.37 16 46 H 0.06 0.31 6.01 -51.93 -0.31 0.00 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.06 0.29 6.52 -51.93 -0.34 -0.05 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -31.16 398.82 -7.51 -38.67 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.40 Total: 10.12 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.17 Total: 1.84 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.02 Total: -53.66 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.16 -7.51 -38.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122881449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.082 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds