Wall clock time and date at job start Wed Apr 1 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46715 * 2 1 4 4 C 1.39837 * 119.99958 * 269.99715 * 3 2 1 5 5 C 1.38922 * 119.99888 * 5.15768 * 4 3 2 6 6 C 1.38029 * 119.99994 * 179.72420 * 5 4 3 7 7 C 1.38933 * 119.99427 * 0.57243 * 6 5 4 8 8 N 1.39895 * 119.99670 * 179.68167 * 7 6 5 9 9 C 1.34777 * 120.00090 * 215.17806 * 8 7 6 10 10 O 1.21392 * 119.99621 * 355.55819 * 9 8 7 11 11 C 1.49324 * 120.00367 * 175.56238 * 9 8 7 12 12 O 1.21366 * 119.99405 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99885 * 179.97438 * 11 9 8 14 14 C 1.46497 * 119.99686 * 180.02562 * 13 11 9 15 15 H 1.09001 * 109.47423 * 325.00222 * 14 13 11 16 16 C 1.53002 * 109.47532 * 84.99855 * 14 13 11 17 17 C 1.50701 * 109.46968 * 204.99946 * 14 13 11 18 18 H 1.07994 * 120.00265 * 0.02562 * 17 14 13 19 19 C 1.37887 * 120.00003 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99984 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99931 * 0.02562 * 19 17 14 22 22 H 1.48498 * 109.47430 * 89.99597 * 21 19 17 23 23 H 1.48500 * 109.47203 * 210.00014 * 21 19 17 24 24 H 1.48510 * 109.47110 * 329.99939 * 21 19 17 25 25 C 1.38931 * 120.00104 * 359.70342 * 7 6 5 26 26 C 1.38020 * 119.99889 * 359.97438 * 25 7 6 27 27 C 1.46501 * 120.00027 * 89.99982 * 3 2 1 28 28 C 1.53001 * 109.46839 * 295.19643 * 27 3 2 29 29 C 1.52995 * 109.47274 * 55.19586 * 27 3 2 30 30 H 1.09007 * 109.47167 * 60.00417 * 1 2 3 31 31 H 1.09001 * 109.46795 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47812 * 300.00228 * 1 2 3 33 33 H 1.08993 * 109.47106 * 119.99561 * 2 1 3 34 34 H 1.08995 * 109.47418 * 240.00406 * 2 1 3 35 35 H 1.07994 * 119.99855 * 359.97438 * 5 4 3 36 36 H 1.07993 * 119.99925 * 180.27545 * 6 5 4 37 37 H 0.97000 * 120.00026 * 35.16858 * 8 7 6 38 38 H 0.96992 * 120.00085 * 359.97438 * 13 11 9 39 39 H 1.08999 * 109.47123 * 300.00605 * 16 14 13 40 40 H 1.09001 * 109.46467 * 59.99781 * 16 14 13 41 41 H 1.08994 * 109.47129 * 179.97438 * 16 14 13 42 42 H 0.96994 * 119.99962 * 179.97438 * 20 19 17 43 43 H 1.08000 * 119.99481 * 179.97438 * 25 7 6 44 44 H 1.07996 * 119.99898 * 180.02562 * 26 25 7 45 45 H 1.08997 * 109.47094 * 175.19660 * 27 3 2 46 46 H 1.08997 * 109.47264 * 60.00121 * 28 27 3 47 47 H 1.09007 * 109.46781 * 180.02562 * 28 27 3 48 48 H 1.08995 * 109.47074 * 299.99933 * 28 27 3 49 49 H 1.09004 * 109.46815 * 60.00223 * 29 27 3 50 50 H 1.08998 * 109.47348 * 179.97438 * 29 27 3 51 51 H 1.09004 * 109.47095 * 300.00478 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2513 2.0405 -1.2110 5 6 1.9193 1.4255 -2.4117 6 6 2.1441 2.0785 -3.6068 7 6 2.7133 3.3459 -3.6095 8 7 2.9473 4.0049 -4.8210 9 6 4.0320 4.7925 -4.9612 10 8 4.7621 4.9945 -4.0127 11 6 4.3357 5.4167 -6.2833 12 8 3.6054 5.2152 -7.2315 13 7 5.4201 6.2047 -6.4233 14 6 5.7176 6.8175 -7.7202 15 1 5.4308 6.1341 -8.5194 16 6 4.9324 8.1233 -7.8596 17 6 7.1938 7.1068 -7.8122 18 1 7.8451 6.8586 -6.9874 19 6 7.7129 7.6874 -8.9500 20 7 9.0011 7.9394 -9.0305 21 14 6.5864 8.1162 -10.3771 22 1 6.0739 9.4992 -10.2050 23 1 7.3441 8.0239 -11.6509 24 1 5.4455 7.1660 -10.4099 25 6 3.0506 3.9584 -2.4090 26 6 2.8197 3.3081 -1.2137 27 6 2.2623 2.0719 1.2687 28 6 0.9394 2.2459 2.0174 29 6 3.2264 1.2454 2.1221 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 1.4816 0.4383 -2.4098 36 1 1.8819 1.6023 -4.5399 37 1 2.3290 3.8950 -5.5603 38 1 6.0030 6.3666 -5.6652 39 1 3.8648 7.9141 -7.7929 40 1 5.2193 8.8067 -7.0604 41 1 5.1542 8.5794 -8.8243 42 1 9.3664 8.3475 -9.8311 43 1 3.4935 4.9434 -2.4112 44 1 3.0815 3.7845 -0.2804 45 1 2.6996 3.0507 1.0714 46 1 0.5022 1.2672 2.2148 47 1 1.1210 2.7602 2.9612 48 1 0.2526 2.8347 1.4095 49 1 4.1689 1.1215 1.5886 50 1 3.4084 1.7595 3.0658 51 1 2.7892 0.2666 2.3194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122881449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:22:03 Heat of formation + Delta-G solvation = -44.982808 kcal Electronic energy + Delta-G solvation = -30042.039756 eV Core-core repulsion = 25941.242375 eV Total energy + Delta-G solvation = -4100.797381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.03761 -40.80175 -39.78831 -38.21842 -37.11780 -35.65484 -34.40861 -33.82051 -32.00549 -31.90356 -31.39622 -28.74548 -28.07387 -27.27527 -26.08127 -24.76827 -23.51887 -23.06600 -22.17480 -21.25432 -20.65612 -20.03991 -18.98101 -18.46885 -18.17160 -17.29787 -17.26159 -17.05483 -16.48849 -15.96481 -15.71851 -15.49732 -15.17897 -15.03898 -15.02879 -14.86030 -14.65611 -14.48654 -14.14948 -14.03443 -13.89617 -13.74865 -13.65989 -13.47241 -13.26051 -13.11876 -12.97593 -12.79691 -12.62935 -12.56050 -12.20305 -12.15137 -12.09409 -11.69194 -11.62486 -11.57182 -11.33772 -11.23688 -10.89507 -10.62537 -10.14289 -10.08375 -9.87267 -8.38297 -7.98641 -6.46635 0.09594 0.49569 0.74041 1.30243 1.35941 1.38463 1.47433 2.13754 2.18676 2.26635 2.72424 2.92608 2.97038 3.44287 3.76597 3.91967 4.06651 4.17498 4.21416 4.32696 4.39517 4.45085 4.46283 4.51339 4.52045 4.54318 4.62374 4.63304 4.76772 4.78179 4.81319 4.90878 4.91991 5.00468 5.07332 5.10799 5.17243 5.19704 5.25293 5.32289 5.33463 5.38601 5.42585 5.45687 5.50693 5.51471 5.85745 5.96954 6.16863 6.46287 6.49770 6.57276 6.61474 6.79697 6.96986 7.20857 8.77056 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.001847 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.791302 B =15159.482002 C =15647.709040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 N -0.620 5.620 4 C 0.211 3.789 5 C -0.180 4.180 6 C -0.083 4.083 7 C 0.054 3.946 8 N -0.626 5.626 9 C 0.512 3.488 10 O -0.526 6.526 11 C 0.501 3.499 12 O -0.552 6.552 13 N -0.668 5.668 14 C 0.239 3.761 15 H 0.039 0.961 16 C -0.158 4.158 17 C -0.541 4.541 18 H 0.052 0.948 19 C 0.027 3.973 20 N -0.933 5.933 21 Si 0.944 3.056 22 H -0.257 1.257 23 H -0.292 1.292 24 H -0.254 1.254 25 C -0.082 4.082 26 C -0.192 4.192 27 C 0.133 3.867 28 C -0.159 4.159 29 C -0.159 4.159 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.427 0.573 38 H 0.412 0.588 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.134 0.866 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.697 -16.672 22.439 34.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.331 5.331 4 C 0.108 3.892 5 C -0.203 4.203 6 C -0.104 4.104 7 C -0.041 4.041 8 N -0.273 5.273 9 C 0.294 3.706 10 O -0.402 6.402 11 C 0.282 3.718 12 O -0.432 6.432 13 N -0.317 5.317 14 C 0.136 3.864 15 H 0.057 0.943 16 C -0.215 4.215 17 C -0.579 4.579 18 H 0.070 0.930 19 C -0.173 4.173 20 N -0.571 5.571 21 Si 0.770 3.230 22 H -0.183 1.183 23 H -0.219 1.219 24 H -0.178 1.178 25 C -0.103 4.103 26 C -0.215 4.215 27 C 0.030 3.970 28 C -0.217 4.217 29 C -0.217 4.217 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.266 0.734 38 H 0.248 0.752 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.152 0.848 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.535 -16.673 22.471 34.707 hybrid contribution 0.272 0.644 -0.927 1.161 sum -20.263 -16.029 21.543 33.640 Atomic orbital electron populations 1.22364 0.95926 1.02604 1.02312 1.21509 0.94352 0.81714 1.03363 1.46858 1.70827 1.13417 1.01964 1.17984 0.92911 0.91422 0.86884 1.20683 1.07827 1.01891 0.89914 1.20912 0.98688 0.91213 0.99563 1.17718 1.07744 0.94150 0.84441 1.42924 1.24195 1.44867 1.15344 1.20122 0.81679 0.80436 0.88399 1.90734 1.49083 1.59815 1.40552 1.20111 0.82527 0.80523 0.88670 1.90700 1.49184 1.62093 1.41180 1.45966 1.25130 1.45800 1.14849 1.19023 0.94202 0.91456 0.81757 0.94322 1.22366 0.99225 0.98621 1.01332 1.21197 0.91480 1.41879 1.03330 0.93016 1.25636 0.96368 0.94520 1.00746 1.69983 1.13622 1.43529 1.29966 0.85932 0.78954 0.80091 0.78031 1.18297 1.21893 1.17825 1.21018 0.98126 0.99917 0.91226 1.20687 1.06988 0.95903 0.97915 1.21162 0.96144 0.96541 0.83181 1.22265 0.96635 1.02533 1.00297 1.22143 0.98675 1.00944 0.99950 0.93371 0.90682 0.91969 0.89482 0.90584 0.83466 0.83609 0.73388 0.75214 0.92675 0.91731 0.93349 0.91908 0.86292 0.84819 0.89863 0.91311 0.90748 0.93411 0.93387 0.90438 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.95 71.98 0.72 -0.71 16 2 C 0.11 1.06 5.31 86.38 0.46 1.52 16 3 N -0.62 -8.41 2.54 -673.19 -1.71 -10.12 16 4 C 0.21 3.93 6.54 38.19 0.25 4.18 16 5 C -0.18 -3.15 9.12 22.38 0.20 -2.94 16 6 C -0.08 -1.65 9.96 22.39 0.22 -1.43 16 7 C 0.05 1.36 6.30 38.19 0.24 1.60 16 8 N -0.63 -17.00 5.32 -304.72 -1.62 -18.62 16 9 C 0.51 17.23 7.73 87.23 0.67 17.90 16 10 O -0.53 -19.45 13.91 -3.38 -0.05 -19.50 16 11 C 0.50 19.26 7.85 87.23 0.68 19.94 16 12 O -0.55 -22.63 16.14 -3.30 -0.05 -22.68 16 13 N -0.67 -27.96 5.06 -447.56 -2.27 -30.22 16 14 C 0.24 11.35 2.15 44.25 0.10 11.44 16 15 H 0.04 1.96 6.63 -2.39 -0.02 1.95 16 16 C -0.16 -6.69 8.96 71.98 0.65 -6.04 16 17 C -0.54 -29.93 9.31 25.60 0.24 -29.69 16 18 H 0.05 3.11 7.98 -2.91 -0.02 3.09 16 19 C 0.03 1.54 5.45 84.66 0.46 2.00 16 20 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 21 Si 0.94 43.72 24.37 68.60 1.67 45.40 16 22 H -0.26 -11.15 6.87 99.48 0.68 -10.47 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.25 -11.38 6.53 99.48 0.65 -10.74 16 25 C -0.08 -2.19 8.69 22.38 0.19 -2.00 16 26 C -0.19 -4.22 9.31 22.38 0.21 -4.01 16 27 C 0.13 1.52 3.20 44.99 0.14 1.67 16 28 C -0.16 -1.44 8.43 71.98 0.61 -0.83 16 29 C -0.16 -1.46 9.07 71.98 0.65 -0.81 16 30 H 0.05 0.52 8.07 -2.38 -0.02 0.50 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.52 5.42 -2.39 -0.01 0.51 16 33 H 0.09 0.61 6.19 -2.39 -0.01 0.59 16 34 H 0.08 0.70 6.42 -2.39 -0.02 0.68 16 35 H 0.15 1.86 6.23 -2.91 -0.02 1.85 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.43 9.97 8.30 -92.71 -0.77 9.20 16 38 H 0.41 16.71 8.01 -92.71 -0.74 15.96 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 2.07 3.27 -2.39 -0.01 2.07 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.12 3.60 6.23 -2.91 -0.02 3.58 16 44 H 0.13 2.57 5.73 -2.91 -0.02 2.55 16 45 H 0.08 1.10 5.31 -2.39 -0.01 1.09 16 46 H 0.07 0.52 6.01 -2.39 -0.01 0.51 16 47 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.50 6.52 -2.38 -0.02 0.48 16 Total: -1.00 -67.56 398.82 2.37 -65.20 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.61 Total: 34.67 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.70 Total: 11.79 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -5.30 Total: -114.88 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.10 Total: -42.18 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.40 kcal Total: -67.56 2.37 -65.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122881449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.214 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds