Wall clock time and date at job start Wed Apr 1 2020 05:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 C 1.50701 * 109.46773 * 119.99659 * 2 1 3 5 5 O 1.21283 * 119.99923 * 107.37460 * 4 2 1 6 6 N 1.34781 * 120.00096 * 287.36981 * 4 2 1 7 7 C 1.46501 * 119.99700 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00068 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.47173 * 90.00051 * 8 6 4 10 10 H 1.08007 * 120.00114 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00356 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99761 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00470 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47081 * 59.99442 * 13 11 9 15 15 H 1.48498 * 109.47393 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46565 * 299.99697 * 13 11 9 17 17 N 1.46895 * 109.47475 * 239.99820 * 2 1 3 18 18 C 1.46757 * 111.00016 * 309.72430 * 17 2 1 19 19 C 1.53420 * 108.59513 * 175.03171 * 18 17 2 20 20 O 1.43126 * 107.92228 * 296.73776 * 19 18 17 21 21 C 1.36147 * 116.71581 * 45.48148 * 20 19 18 22 22 C 1.38765 * 118.69341 * 165.03588 * 21 20 19 23 23 C 1.38730 * 120.15687 * 179.51749 * 22 21 20 24 24 N 1.39974 * 120.06326 * 179.72302 * 23 22 21 25 25 C 1.46505 * 120.00248 * 0.02562 * 24 23 22 26 26 C 1.46501 * 120.00123 * 180.02562 * 24 23 22 27 27 C 1.38855 * 119.87236 * 0.02562 * 23 22 21 28 28 C 1.38045 * 120.03235 * 0.08238 * 27 23 22 29 29 C 1.38954 * 121.36771 * 344.73175 * 21 20 19 30 30 H 1.09004 * 109.47014 * 187.00124 * 1 2 3 31 31 H 1.08999 * 109.47528 * 307.00502 * 1 2 3 32 32 H 1.09004 * 109.46864 * 67.01081 * 1 2 3 33 33 H 1.09000 * 109.46887 * 89.99949 * 7 6 4 34 34 H 1.09000 * 109.46692 * 209.99726 * 7 6 4 35 35 H 1.09001 * 109.47326 * 329.99570 * 7 6 4 36 36 H 1.08991 * 109.47205 * 210.00107 * 8 6 4 37 37 H 1.09007 * 109.47067 * 330.00330 * 8 6 4 38 38 H 0.97000 * 120.00188 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.62209 * 294.76832 * 18 17 2 40 40 H 1.09001 * 109.61031 * 55.12471 * 18 17 2 41 41 H 1.08998 * 109.77278 * 56.35065 * 19 18 17 42 42 H 1.08998 * 109.76901 * 177.13330 * 19 18 17 43 43 H 1.07994 * 119.91775 * 359.54060 * 22 21 20 44 44 H 1.09000 * 109.47011 * 89.99490 * 25 24 23 45 45 H 1.08998 * 109.47029 * 209.99696 * 25 24 23 46 46 H 1.09002 * 109.46722 * 329.99884 * 25 24 23 47 47 H 1.08996 * 109.47174 * 59.99966 * 26 24 23 48 48 H 1.09000 * 109.47727 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46932 * 299.99980 * 26 24 23 50 50 H 1.07994 * 119.98216 * 180.02562 * 27 23 22 51 51 H 1.08007 * 119.82537 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5301 -1.8121 1.1340 6 7 1.9283 -0.1213 2.4383 7 6 1.3266 1.2093 2.5549 8 6 2.4171 -0.8116 3.6345 9 6 3.8629 -0.4545 3.8650 10 1 4.3674 0.2190 3.1880 11 6 4.5420 -0.9883 4.9396 12 7 3.9278 -1.8088 5.7638 13 14 6.3339 -0.5451 5.2259 14 1 6.4564 0.9224 5.4171 15 1 6.8294 -1.2450 6.4383 16 1 7.1403 -0.9601 4.0499 17 7 2.0198 -0.6925 -1.1993 18 6 1.3696 -1.9990 -1.3546 19 6 1.8252 -2.6174 -2.6827 20 8 1.3695 -1.7701 -3.7424 21 6 1.5597 -0.4317 -3.5807 22 6 1.4318 0.3976 -4.6859 23 6 1.6092 1.7672 -4.5537 24 7 1.4854 2.6013 -5.6709 25 6 1.1676 2.0284 -6.9813 26 6 1.6737 4.0473 -5.5299 27 6 1.9161 2.3082 -3.3122 28 6 2.0458 1.4840 -2.2124 29 6 1.8700 0.1100 -2.3393 30 1 -0.3633 -1.0200 0.1253 31 1 -0.3634 0.6185 0.8206 32 1 -0.3633 0.4014 -0.9461 33 1 0.2528 1.1098 2.7138 34 1 1.7714 1.7365 3.3989 35 1 1.5079 1.7716 1.6389 36 1 1.8254 -0.5063 4.4974 37 1 2.3268 -1.8889 3.4947 38 1 4.4056 -2.1847 6.5197 39 1 1.6566 -2.6510 -0.5298 40 1 0.2872 -1.8706 -1.3600 41 1 2.9130 -2.6831 -2.7049 42 1 1.3929 -3.6118 -2.7939 43 1 1.1931 -0.0240 -5.6510 44 1 0.0859 1.9979 -7.1118 45 1 1.6108 2.6440 -7.7641 46 1 1.5697 1.0172 -7.0428 47 1 2.6794 4.2486 -5.1612 48 1 1.5387 4.5276 -6.4990 49 1 0.9423 4.4418 -4.8244 50 1 2.0542 3.3741 -3.2072 51 1 2.2842 1.9084 -1.2483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130423861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:19 Heat of formation + Delta-G solvation = -0.200282 kcal Electronic energy + Delta-G solvation = -31776.088508 eV Core-core repulsion = 27677.233043 eV Total energy + Delta-G solvation = -4098.855465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.23596 -39.26628 -38.48039 -36.75906 -35.35723 -34.77218 -32.70607 -31.21596 -30.68481 -30.18447 -28.33670 -27.76789 -27.10020 -25.96241 -24.87889 -24.41896 -23.29714 -22.22022 -21.47012 -19.65170 -18.43374 -18.27013 -16.88236 -16.76764 -16.47462 -16.24700 -15.75490 -15.53015 -15.27494 -15.06601 -14.71811 -14.65141 -14.53040 -13.99279 -13.90226 -13.67006 -13.30666 -13.11386 -12.96465 -12.91491 -12.62137 -12.50447 -12.33491 -12.25728 -12.13841 -12.00943 -11.81677 -11.64003 -11.44382 -11.25571 -11.18856 -10.95623 -10.89044 -10.57717 -10.42486 -10.19094 -10.12894 -9.63114 -8.91331 -8.55800 -8.42571 -8.28938 -7.65661 -6.87495 -6.03767 -4.08337 1.42557 1.55880 2.86607 3.25353 3.33203 3.37371 3.40049 3.44044 3.62491 3.85493 4.15890 4.46065 4.59980 4.71036 4.77952 4.88778 4.98561 5.04335 5.07836 5.11658 5.17678 5.21047 5.25162 5.30427 5.30923 5.34636 5.42864 5.43247 5.45427 5.55415 5.68555 5.70887 5.71303 5.81219 5.89629 6.02375 6.03077 6.09096 6.14034 6.22374 6.30591 6.42879 6.94319 7.09187 7.10832 7.18159 7.29534 7.42630 7.52862 7.57789 7.92654 8.23480 8.38965 8.90386 9.08430 9.56776 11.04269 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002684 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.928737 B =10431.439326 C =11006.598942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 H 0.111 0.889 4 C 0.515 3.485 5 O -0.527 6.527 6 N -0.600 5.600 7 C 0.081 3.919 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.459 5.459 18 C 0.005 3.995 19 C 0.061 3.939 20 O -0.320 6.320 21 C 0.135 3.865 22 C -0.203 4.203 23 C 0.213 3.787 24 N -0.641 5.641 25 C 0.095 3.905 26 C 0.100 3.900 27 C -0.194 4.194 28 C -0.082 4.082 29 C 0.004 3.996 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.125 0.875 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.052 0.948 50 H 0.122 0.878 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 9.643 -22.217 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.049 4.049 3 H 0.128 0.872 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.332 5.332 7 C -0.063 4.063 8 C 0.128 3.872 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.174 5.174 18 C -0.121 4.121 19 C -0.014 4.014 20 O -0.233 6.233 21 C 0.087 3.913 22 C -0.226 4.226 23 C 0.112 3.888 24 N -0.355 5.355 25 C -0.048 4.048 26 C -0.043 4.043 27 C -0.216 4.216 28 C -0.103 4.103 29 C -0.095 4.095 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.146 0.854 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.140 0.860 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.101 8.801 -22.247 25.597 hybrid contribution 0.460 0.499 0.410 0.793 sum -8.641 9.300 -21.837 25.259 Atomic orbital electron populations 1.22373 0.94785 1.03327 1.03144 1.21932 0.94577 0.99181 0.89221 0.87172 1.19929 0.79734 0.86525 0.83835 1.90596 1.44144 1.20391 1.85213 1.48109 1.59150 1.17617 1.08359 1.21725 0.97153 0.85173 1.02272 1.19283 0.94143 0.93705 0.80044 1.21392 0.96242 1.28293 1.10513 0.92498 1.24928 0.98432 0.94896 0.95819 1.69922 1.36961 1.31153 1.15446 0.86561 0.84868 0.78430 0.77590 1.20259 1.21199 1.20128 1.58774 1.55141 1.03032 1.00467 1.23091 0.97206 0.91480 1.00357 1.23183 1.00620 0.93102 0.84471 1.86151 1.78100 1.14130 1.44962 1.18255 0.97990 0.83058 0.91980 1.19737 1.14248 0.90942 0.97665 1.17296 0.95601 0.88941 0.86933 1.46227 1.78017 1.05237 1.05999 1.21621 0.99899 0.99533 0.83753 1.21546 1.00886 0.79978 1.01929 1.20360 1.10492 0.99655 0.91127 1.20665 0.99908 0.90936 0.98804 1.18774 1.07863 0.92784 0.90120 0.91630 0.90663 0.91631 0.93575 0.90601 0.92588 0.94979 0.93852 0.92679 0.85730 0.92698 0.90563 0.87000 0.85351 0.93676 0.91814 0.91335 0.92875 0.91169 0.92918 0.85964 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.02 37.16 0.30 -2.00 16 2 C 0.06 0.96 1.60 -68.87 -0.11 0.85 16 3 H 0.11 1.58 3.99 -51.93 -0.21 1.38 16 4 C 0.51 10.60 6.86 -10.98 -0.08 10.52 16 5 O -0.53 -12.94 13.74 5.56 0.08 -12.87 16 6 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 7 C 0.08 1.25 9.16 59.85 0.55 1.79 16 8 C 0.25 6.41 5.16 -5.20 -0.03 6.39 16 9 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 13 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 N -0.46 -7.47 4.37 -164.50 -0.72 -8.19 16 18 C 0.00 0.08 4.84 -3.68 -0.02 0.06 16 19 C 0.06 0.81 7.25 37.37 0.27 1.08 16 20 O -0.32 -4.56 10.40 -20.21 -0.21 -4.77 16 21 C 0.14 1.95 6.47 -39.12 -0.25 1.70 16 22 C -0.20 -2.57 9.10 -39.20 -0.36 -2.92 16 23 C 0.21 2.49 6.55 -83.73 -0.55 1.94 16 24 N -0.64 -5.88 3.42 -187.52 -0.64 -6.52 16 25 C 0.10 0.66 10.16 59.85 0.61 1.27 16 26 C 0.10 0.67 9.41 59.85 0.56 1.23 16 27 C -0.19 -2.26 9.31 -39.42 -0.37 -2.62 16 28 C -0.08 -1.08 9.05 -39.33 -0.36 -1.44 16 29 C 0.00 0.05 5.05 -83.43 -0.42 -0.37 16 30 H 0.06 0.89 6.65 -51.93 -0.35 0.54 16 31 H 0.07 0.86 6.18 -51.93 -0.32 0.54 16 32 H 0.06 0.80 7.54 -51.93 -0.39 0.41 16 33 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.71 6.10 -51.93 -0.32 0.39 16 36 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 2.15 5.90 -51.93 -0.31 1.85 16 40 H 0.05 0.77 6.05 -51.93 -0.31 0.46 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.13 1.44 6.14 -52.49 -0.32 1.12 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 46 H 0.07 0.49 6.20 -51.93 -0.32 0.17 16 47 H 0.05 0.35 7.95 -51.93 -0.41 -0.06 16 48 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 49 H 0.05 0.34 7.96 -51.93 -0.41 -0.07 16 50 H 0.12 1.18 6.74 -52.49 -0.35 0.82 16 51 H 0.13 1.58 5.81 -52.48 -0.31 1.28 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -34.48 392.14 -8.62 -43.10 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.57 Total: 1.37 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.66 Total: 3.90 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -1.15 Total: -53.63 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.13 Total: -17.64 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.48 -8.62 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130423861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds