Wall clock time and date at job start Wed Apr 1 2020 05:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46778 * 2 1 4 4 C 1.50701 * 109.46773 * 119.99659 * 2 1 3 5 5 O 1.21283 * 119.99923 * 107.37460 * 4 2 1 6 6 N 1.34781 * 120.00096 * 287.36981 * 4 2 1 7 7 C 1.46501 * 119.99700 * 0.02562 * 6 4 2 8 8 C 1.46498 * 120.00068 * 180.02562 * 6 4 2 9 9 C 1.50698 * 109.47173 * 90.00051 * 8 6 4 10 10 H 1.08007 * 120.00114 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00356 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99761 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00470 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47081 * 59.99442 * 13 11 9 15 15 H 1.48498 * 109.47393 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46565 * 299.99697 * 13 11 9 17 17 N 1.46895 * 109.47475 * 239.99820 * 2 1 3 18 18 C 1.46757 * 111.00016 * 309.72430 * 17 2 1 19 19 C 1.53420 * 108.59513 * 175.03171 * 18 17 2 20 20 O 1.43126 * 107.92228 * 296.73776 * 19 18 17 21 21 C 1.36147 * 116.71581 * 45.48148 * 20 19 18 22 22 C 1.38765 * 118.69341 * 165.03588 * 21 20 19 23 23 C 1.38730 * 120.15687 * 179.51749 * 22 21 20 24 24 N 1.39974 * 120.06326 * 179.72302 * 23 22 21 25 25 C 1.46505 * 120.00248 * 0.02562 * 24 23 22 26 26 C 1.46501 * 120.00123 * 180.02562 * 24 23 22 27 27 C 1.38855 * 119.87236 * 0.02562 * 23 22 21 28 28 C 1.38045 * 120.03235 * 0.08238 * 27 23 22 29 29 C 1.38954 * 121.36771 * 344.73175 * 21 20 19 30 30 H 1.09004 * 109.47014 * 187.00124 * 1 2 3 31 31 H 1.08999 * 109.47528 * 307.00502 * 1 2 3 32 32 H 1.09004 * 109.46864 * 67.01081 * 1 2 3 33 33 H 1.09000 * 109.46887 * 89.99949 * 7 6 4 34 34 H 1.09000 * 109.46692 * 209.99726 * 7 6 4 35 35 H 1.09001 * 109.47326 * 329.99570 * 7 6 4 36 36 H 1.08991 * 109.47205 * 210.00107 * 8 6 4 37 37 H 1.09007 * 109.47067 * 330.00330 * 8 6 4 38 38 H 0.97000 * 120.00188 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.62209 * 294.76832 * 18 17 2 40 40 H 1.09001 * 109.61031 * 55.12471 * 18 17 2 41 41 H 1.08998 * 109.77278 * 56.35065 * 19 18 17 42 42 H 1.08998 * 109.76901 * 177.13330 * 19 18 17 43 43 H 1.07994 * 119.91775 * 359.54060 * 22 21 20 44 44 H 1.09000 * 109.47011 * 89.99490 * 25 24 23 45 45 H 1.08998 * 109.47029 * 209.99696 * 25 24 23 46 46 H 1.09002 * 109.46722 * 329.99884 * 25 24 23 47 47 H 1.08996 * 109.47174 * 59.99966 * 26 24 23 48 48 H 1.09000 * 109.47727 * 180.02562 * 26 24 23 49 49 H 1.09005 * 109.46932 * 299.99980 * 26 24 23 50 50 H 1.07994 * 119.98216 * 180.02562 * 27 23 22 51 51 H 1.08007 * 119.82537 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.5301 -1.8121 1.1340 6 7 1.9283 -0.1213 2.4383 7 6 1.3266 1.2093 2.5549 8 6 2.4171 -0.8116 3.6345 9 6 3.8629 -0.4545 3.8650 10 1 4.3674 0.2190 3.1880 11 6 4.5420 -0.9883 4.9396 12 7 3.9278 -1.8088 5.7638 13 14 6.3339 -0.5451 5.2259 14 1 6.4564 0.9224 5.4171 15 1 6.8294 -1.2450 6.4383 16 1 7.1403 -0.9601 4.0499 17 7 2.0198 -0.6925 -1.1993 18 6 1.3696 -1.9990 -1.3546 19 6 1.8252 -2.6174 -2.6827 20 8 1.3695 -1.7701 -3.7424 21 6 1.5597 -0.4317 -3.5807 22 6 1.4318 0.3976 -4.6859 23 6 1.6092 1.7672 -4.5537 24 7 1.4854 2.6013 -5.6709 25 6 1.1676 2.0284 -6.9813 26 6 1.6737 4.0473 -5.5299 27 6 1.9161 2.3082 -3.3122 28 6 2.0458 1.4840 -2.2124 29 6 1.8700 0.1100 -2.3393 30 1 -0.3633 -1.0200 0.1253 31 1 -0.3634 0.6185 0.8206 32 1 -0.3633 0.4014 -0.9461 33 1 0.2528 1.1098 2.7138 34 1 1.7714 1.7365 3.3989 35 1 1.5079 1.7716 1.6389 36 1 1.8254 -0.5063 4.4974 37 1 2.3268 -1.8889 3.4947 38 1 4.4056 -2.1847 6.5197 39 1 1.6566 -2.6510 -0.5298 40 1 0.2872 -1.8706 -1.3600 41 1 2.9130 -2.6831 -2.7049 42 1 1.3929 -3.6118 -2.7939 43 1 1.1931 -0.0240 -5.6510 44 1 0.0859 1.9979 -7.1118 45 1 1.6108 2.6440 -7.7641 46 1 1.5697 1.0172 -7.0428 47 1 2.6794 4.2486 -5.1612 48 1 1.5387 4.5276 -6.4990 49 1 0.9423 4.4418 -4.8244 50 1 2.0542 3.3741 -3.2072 51 1 2.2842 1.9084 -1.2483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130423861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:18 Heat of formation + Delta-G solvation = -23.297237 kcal Electronic energy + Delta-G solvation = -31777.090067 eV Core-core repulsion = 27677.233043 eV Total energy + Delta-G solvation = -4099.857024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34352 -40.67491 -39.39427 -37.97077 -36.63543 -36.10217 -34.77557 -32.48034 -31.63908 -31.13924 -29.63684 -28.94594 -28.11251 -27.41712 -25.98062 -25.67492 -24.70483 -23.33032 -22.70180 -20.71309 -19.80751 -19.35873 -18.67178 -17.99979 -17.85738 -17.36264 -17.05638 -16.70161 -16.51874 -16.23647 -15.94870 -15.79258 -15.57003 -15.40828 -15.06740 -14.85117 -14.54362 -14.26484 -14.14832 -13.95726 -13.77705 -13.49055 -13.40478 -13.29910 -13.22813 -13.15423 -13.03691 -12.87584 -12.78026 -12.74520 -12.58611 -12.49357 -12.26757 -12.17276 -11.92983 -11.71232 -11.47106 -11.19408 -10.63805 -10.38223 -9.64476 -9.40643 -9.23723 -8.22128 -7.79257 -6.36430 0.46360 0.58057 1.36144 1.40534 1.47572 1.78311 2.08957 2.16223 2.38193 2.51403 2.76066 3.01427 3.07461 3.49854 3.64645 3.71503 3.93162 4.03699 4.08154 4.19907 4.21527 4.27800 4.30205 4.39012 4.45283 4.53844 4.56179 4.61912 4.62842 4.68316 4.72055 4.78304 4.84774 4.90720 4.92054 4.96562 5.00273 5.00665 5.08159 5.13361 5.19164 5.23802 5.38433 5.50991 5.56424 5.83405 5.94219 6.06798 6.10329 6.38502 6.44751 6.61515 6.70259 6.77975 7.28750 7.48316 8.84573 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002684 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.928737 B =10431.439326 C =11006.598942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.129 0.871 4 C 0.505 3.495 5 O -0.578 6.578 6 N -0.606 5.606 7 C 0.074 3.926 8 C 0.262 3.738 9 C -0.541 4.541 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.965 3.035 14 H -0.259 1.259 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.481 5.481 18 C 0.009 3.991 19 C 0.066 3.934 20 O -0.325 6.325 21 C 0.117 3.883 22 C -0.211 4.211 23 C 0.216 3.784 24 N -0.642 5.642 25 C 0.089 3.911 26 C 0.093 3.907 27 C -0.191 4.191 28 C -0.085 4.085 29 C -0.019 4.019 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.026 0.974 37 H -0.002 1.002 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.145 0.855 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 12.696 -24.203 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 H 0.146 0.854 4 C 0.293 3.707 5 O -0.458 6.458 6 N -0.338 5.338 7 C -0.068 4.068 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.206 1.206 17 N -0.197 5.197 18 C -0.118 4.118 19 C -0.009 4.009 20 O -0.239 6.239 21 C 0.069 3.931 22 C -0.234 4.234 23 C 0.113 3.887 24 N -0.355 5.355 25 C -0.054 4.054 26 C -0.049 4.049 27 C -0.214 4.214 28 C -0.106 4.106 29 C -0.117 4.117 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.016 0.984 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.076 0.924 50 H 0.163 0.837 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.459 11.928 -24.274 28.652 hybrid contribution 0.526 -0.388 0.913 1.123 sum -8.933 11.540 -23.361 27.544 Atomic orbital electron populations 1.22308 0.92459 1.03206 1.04627 1.21825 0.96150 0.98828 0.86682 0.85399 1.20878 0.78720 0.86114 0.84979 1.90573 1.46342 1.22787 1.86106 1.48103 1.59214 1.19411 1.07083 1.22044 0.98412 0.82497 1.03851 1.18737 0.93516 0.91675 0.81985 1.21661 0.97481 1.28310 1.10536 0.93070 1.25826 1.03002 0.94681 0.95543 1.70038 1.38787 1.31991 1.15937 0.85512 0.79103 0.79120 0.77351 1.18379 1.20279 1.20592 1.58751 1.56136 1.03636 1.01209 1.22963 0.97571 0.91101 1.00160 1.23222 1.00064 0.94119 0.83520 1.86135 1.78290 1.14445 1.45049 1.18524 0.98834 0.83183 0.92523 1.19904 1.14469 0.91444 0.97615 1.17465 0.94391 0.88940 0.87912 1.46537 1.76902 1.06108 1.05933 1.21786 1.00527 0.99734 0.83309 1.21747 1.01104 0.78531 1.03560 1.20592 1.09606 1.00597 0.90630 1.20806 0.99700 0.90385 0.99717 1.18835 1.09931 0.93355 0.89596 0.92763 0.88734 0.90241 0.90670 0.91212 0.89209 0.95611 0.98379 0.92413 0.88672 0.91927 0.91846 0.84242 0.84414 0.93007 0.89583 0.91859 0.92736 0.88886 0.92421 0.83723 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.02 71.98 0.58 -3.50 16 2 C 0.07 2.31 1.60 44.17 0.07 2.38 16 3 H 0.13 3.42 3.99 -2.39 -0.01 3.41 16 4 C 0.51 21.36 6.86 87.66 0.60 21.97 16 5 O -0.58 -30.12 13.74 -3.04 -0.04 -30.16 16 6 N -0.61 -25.68 2.86 -851.13 -2.43 -28.11 16 7 C 0.07 2.15 9.16 127.77 1.17 3.32 16 8 C 0.26 14.19 5.16 85.63 0.44 14.63 16 9 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.49 5.46 84.65 0.46 0.96 16 12 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 13 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 14 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 17 N -0.48 -15.81 4.37 -674.34 -2.95 -18.75 16 18 C 0.01 0.27 4.84 86.47 0.42 0.69 16 19 C 0.07 1.77 7.25 72.12 0.52 2.30 16 20 O -0.33 -9.23 10.40 -95.22 -0.99 -10.22 16 21 C 0.12 3.32 6.47 22.57 0.15 3.46 16 22 C -0.21 -5.04 9.10 22.51 0.20 -4.84 16 23 C 0.22 4.53 6.55 38.11 0.25 4.78 16 24 N -0.64 -9.83 3.42 -747.19 -2.55 -12.38 16 25 C 0.09 0.98 10.16 127.77 1.30 2.28 16 26 C 0.09 0.91 9.41 127.77 1.20 2.11 16 27 C -0.19 -3.96 9.31 22.37 0.21 -3.75 16 28 C -0.09 -2.08 9.05 22.43 0.20 -1.88 16 29 C -0.02 -0.54 5.05 38.18 0.19 -0.35 16 30 H 0.05 1.45 6.65 -2.39 -0.02 1.43 16 31 H 0.09 1.91 6.18 -2.39 -0.01 1.89 16 32 H 0.08 1.76 7.54 -2.38 -0.02 1.74 16 33 H 0.07 1.77 7.37 -2.39 -0.02 1.75 16 34 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 35 H 0.09 2.00 6.10 -2.39 -0.01 1.98 16 36 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 37 H 0.00 -0.12 7.42 -2.38 -0.02 -0.14 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.10 3.55 5.90 -2.39 -0.01 3.53 16 40 H 0.06 1.80 6.05 -2.39 -0.01 1.79 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.14 2.92 6.14 -2.91 -0.02 2.90 16 44 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.09 0.57 7.92 -2.39 -0.02 0.55 16 46 H 0.06 0.77 6.20 -2.39 -0.01 0.76 16 47 H 0.05 0.54 7.95 -2.39 -0.02 0.52 16 48 H 0.09 0.50 7.79 -2.39 -0.02 0.48 16 49 H 0.06 0.53 7.96 -2.38 -0.02 0.51 16 50 H 0.15 2.27 6.74 -2.91 -0.02 2.25 16 51 H 0.14 3.01 5.81 -2.91 -0.02 2.99 16 Total: -1.00 -78.34 392.14 2.51 -75.83 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.95 Total: 19.17 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 8.21 Total: 13.27 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -7.65 Total: -115.44 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.03 Total: -40.38 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -78.34 2.51 -75.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130423861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.533 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds