Wall clock time and date at job start Wed Apr 1 2020 04:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46553 * 2 1 4 4 C 1.53001 * 109.46999 * 119.99507 * 2 1 3 5 5 N 1.46501 * 109.46991 * 295.00258 * 4 2 1 6 6 C 1.34783 * 119.99989 * 180.02562 * 5 4 2 7 7 O 1.21581 * 119.99645 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.39244 * 119.99914 * 175.66733 * 8 6 5 10 10 C 1.39472 * 119.83475 * 216.79364 * 9 8 6 11 11 C 1.36380 * 120.16845 * 179.76524 * 10 9 8 12 12 C 1.40872 * 119.82514 * 0.53221 * 11 10 9 13 13 C 1.41159 * 120.15933 * 179.70378 * 12 11 10 14 14 H 1.08008 * 119.99076 * 205.39023 * 13 12 11 15 15 C 1.39887 * 120.00557 * 25.38589 * 13 12 11 16 16 N 1.30886 * 119.99761 * 14.38228 * 15 13 12 17 17 Si 1.86800 * 120.00164 * 194.37906 * 15 13 12 18 18 H 1.48497 * 109.46785 * 60.00155 * 17 15 13 19 19 H 1.48493 * 109.46992 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47189 * 299.99974 * 17 15 13 21 21 C 1.40862 * 119.67209 * 359.72111 * 12 11 10 22 22 C 1.36371 * 119.83194 * 359.97438 * 21 12 11 23 23 C 1.52990 * 109.47483 * 239.99702 * 2 1 3 24 24 N 1.46904 * 109.47382 * 63.64937 * 23 2 1 25 25 C 1.47017 * 110.99327 * 76.27772 * 24 23 2 26 26 C 1.53104 * 109.25580 * 182.39215 * 25 24 23 27 27 O 1.43008 * 109.26063 * 303.15596 * 26 25 24 28 28 C 1.43012 * 113.74034 * 58.66484 * 27 26 25 29 29 C 1.47013 * 111.00545 * 199.91317 * 24 23 2 30 30 H 1.08997 * 109.46837 * 64.79621 * 1 2 3 31 31 H 1.09004 * 109.46751 * 184.79129 * 1 2 3 32 32 H 1.08998 * 109.47611 * 304.79305 * 1 2 3 33 33 H 1.08997 * 109.47386 * 55.00311 * 4 2 1 34 34 H 1.08993 * 109.47145 * 175.00465 * 4 2 1 35 35 H 0.96995 * 120.00396 * 0.02562 * 5 4 2 36 36 H 0.96999 * 120.00385 * 355.67468 * 8 6 5 37 37 H 1.08004 * 119.92053 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.09047 * 180.25726 * 11 10 9 39 39 H 0.97001 * 119.99534 * 180.02562 * 16 15 13 40 40 H 1.08007 * 120.08428 * 179.97438 * 21 12 11 41 41 H 1.08002 * 119.91812 * 179.97438 * 22 21 12 42 42 H 1.09003 * 109.47131 * 303.65361 * 23 2 1 43 43 H 1.08997 * 109.47719 * 183.65533 * 23 2 1 44 44 H 1.09002 * 109.51076 * 62.46197 * 25 24 23 45 45 H 1.09000 * 109.50990 * 302.33070 * 25 24 23 46 46 H 1.08996 * 109.50574 * 183.21749 * 26 25 24 47 47 H 1.09000 * 109.54156 * 63.11009 * 26 25 24 48 48 H 1.08999 * 109.50661 * 61.26575 * 28 27 26 49 49 H 1.09003 * 109.50884 * 181.39426 * 28 27 26 50 50 H 1.09002 * 109.50511 * 297.54984 * 29 24 23 51 51 H 1.09002 * 109.50326 * 57.67107 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0356 2.4424 6 6 1.9963 -0.4128 3.6660 7 8 2.6279 -1.4454 3.7797 8 7 1.6393 0.2831 4.7636 9 6 1.9153 -0.2249 6.0304 10 6 1.0040 -0.0331 7.0686 11 6 1.2652 -0.5318 8.3107 12 6 2.4643 -1.2326 8.5464 13 6 2.7447 -1.7464 9.8310 14 1 3.7682 -1.9064 10.1368 15 6 1.6973 -2.0481 10.7077 16 7 0.4703 -2.1266 10.2588 17 14 2.0497 -2.3392 12.5189 18 1 2.6685 -1.1229 13.1044 19 1 0.7802 -2.6398 13.2281 20 1 2.9808 -3.4870 12.6638 21 6 3.3822 -1.4176 7.4941 22 6 3.1043 -0.9185 6.2558 23 6 2.0401 -0.7213 -1.2491 24 7 1.6238 0.0202 -2.4470 25 6 2.4533 1.2186 -2.6394 26 6 1.9485 1.9913 -3.8610 27 8 1.9662 1.1313 -5.0035 28 6 1.1683 -0.0456 -4.8507 29 6 1.6652 -0.8389 -3.6393 30 1 -0.3633 0.4376 -0.9298 31 1 -0.3633 -1.0241 0.0858 32 1 -0.3634 0.5864 0.8439 33 1 1.6055 -1.7197 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 1.1482 0.8592 2.3517 36 1 1.1899 1.1377 4.6712 37 1 0.0874 0.5089 6.8876 38 1 0.5567 -0.3862 9.1127 39 1 -0.2560 -2.3355 10.8669 40 1 4.3038 -1.9534 7.6675 41 1 3.8073 -1.0592 5.4481 42 1 1.6243 -1.7283 -1.2824 43 1 3.1281 -0.7784 -1.2170 44 1 3.4899 0.9221 -2.7993 45 1 2.3877 1.8526 -1.7552 46 1 2.5954 2.8498 -4.0415 47 1 0.9300 2.3348 -3.6799 48 1 0.1270 0.2380 -4.6978 49 1 1.2509 -0.6603 -5.7471 50 1 2.6892 -1.1685 -3.8151 51 1 1.0243 -1.7070 -3.4848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151713277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:43 Heat of formation + Delta-G solvation = -50.348935 kcal Electronic energy + Delta-G solvation = -29476.457741 eV Core-core repulsion = 25375.427667 eV Total energy + Delta-G solvation = -4101.030074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.16380 -39.78805 -37.78349 -37.05639 -35.24329 -34.30765 -33.06901 -32.29993 -31.62608 -29.51870 -28.85179 -28.24462 -26.71013 -25.01902 -24.50872 -24.02659 -21.61194 -20.97780 -20.77901 -20.48355 -19.88298 -17.90518 -17.23077 -17.18608 -16.58630 -16.47037 -15.90020 -15.50941 -15.37580 -15.24328 -15.14917 -14.87988 -14.38132 -14.27479 -13.88806 -13.75435 -13.37068 -13.13338 -12.91454 -12.68014 -12.63869 -12.37989 -12.05194 -11.91777 -11.82102 -11.75314 -11.42966 -11.28582 -11.24597 -11.06606 -11.00030 -10.99087 -10.86881 -10.70098 -10.12506 -10.05403 -9.53757 -9.44384 -9.13887 -8.90217 -8.84901 -8.80304 -7.48212 -6.91256 -6.67812 -4.26286 2.71555 2.98354 3.08467 3.11465 3.14688 3.20808 3.34014 3.46545 3.76468 3.96306 4.33772 4.44360 4.48608 4.62293 4.67606 4.68698 4.70034 4.76045 4.82148 4.88841 5.03986 5.14332 5.20683 5.25175 5.31964 5.37161 5.40078 5.52889 5.62823 5.71402 5.76100 5.77777 5.98404 6.11472 6.24904 6.46940 6.48418 6.50495 6.65658 6.68296 6.83907 6.90311 7.09173 7.17357 7.33536 7.43684 7.66961 7.93785 8.02990 8.11023 8.34024 8.54560 8.65531 8.93753 8.97222 9.17515 10.23613 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.001477 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.390624 B =18958.435292 C =19031.901486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.146 3.854 5 N -0.751 5.751 6 C 0.694 3.306 7 O -0.579 6.579 8 N -0.667 5.667 9 C 0.011 3.989 10 C -0.116 4.116 11 C -0.152 4.152 12 C 0.103 3.897 13 C -0.458 4.458 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.798 5.798 17 Si 0.910 3.090 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.216 4.216 22 C -0.076 4.076 23 C 0.062 3.938 24 N -0.533 5.533 25 C 0.015 3.985 26 C 0.064 3.936 27 O -0.387 6.387 28 C 0.064 3.936 29 C 0.017 3.983 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.390 0.610 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.280 0.720 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.043 0.957 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 7.700 -25.256 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.021 3.979 5 N -0.408 5.408 6 C 0.394 3.606 7 O -0.456 6.456 8 N -0.313 5.313 9 C -0.082 4.082 10 C -0.136 4.136 11 C -0.172 4.172 12 C 0.100 3.900 13 C -0.488 4.488 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.424 5.424 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.236 4.236 22 C -0.097 4.097 23 C -0.067 4.067 24 N -0.258 5.258 25 C -0.113 4.113 26 C -0.013 4.013 27 O -0.306 6.306 28 C -0.013 4.013 29 C -0.111 4.111 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.061 0.939 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.047 6.842 -25.193 26.186 hybrid contribution 0.233 0.185 0.891 0.939 sum -1.813 7.027 -24.302 25.363 Atomic orbital electron populations 1.21731 0.93864 1.02023 1.01947 1.21320 0.97438 0.99924 0.92831 0.90673 1.21083 0.99570 0.95031 0.82261 1.45063 1.62197 1.28897 1.04679 1.16038 0.80741 0.83526 0.80258 1.90910 1.44576 1.24876 1.85269 1.42081 1.62754 1.22461 1.04002 1.16977 0.97135 1.11323 0.82722 1.20239 0.96465 1.02912 0.94023 1.20952 0.99983 1.00613 0.95647 1.17670 0.91239 0.88799 0.92281 1.19522 0.94017 1.37442 0.97789 0.90517 1.25911 0.94561 0.92982 1.00942 1.69831 1.00584 1.35135 1.36820 0.86334 0.78574 0.79796 0.81791 1.18888 1.20400 1.19056 1.20667 1.01951 1.08142 0.92813 1.20353 0.94675 0.98259 0.96371 1.22076 0.98353 0.97360 0.88874 1.62132 1.53642 1.07272 1.02782 1.22856 0.95450 0.93328 0.99688 1.22669 1.01520 0.92486 0.84661 1.87990 1.70145 1.33850 1.38596 1.22666 0.94797 0.86455 0.97407 1.22806 1.00958 0.96555 0.90792 0.91341 0.92796 0.93128 0.91682 0.92059 0.77518 0.77705 0.89288 0.85801 0.90928 0.88798 0.87717 0.90199 0.93932 0.93828 0.89355 0.88477 0.92194 0.92190 0.88476 0.93868 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.94 37.16 0.33 -0.73 16 2 C -0.10 -0.74 2.48 -90.62 -0.22 -0.96 16 3 H 0.07 0.55 6.81 -51.92 -0.35 0.19 16 4 C 0.15 1.61 5.06 -4.04 -0.02 1.59 16 5 N -0.75 -9.42 5.33 -65.23 -0.35 -9.77 16 6 C 0.69 12.58 8.39 -86.91 -0.73 11.85 16 7 O -0.58 -13.19 13.88 5.29 0.07 -13.12 16 8 N -0.67 -12.04 5.30 -14.10 -0.07 -12.11 16 9 C 0.01 0.25 6.27 -83.57 -0.52 -0.27 16 10 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 11 C -0.15 -3.96 8.63 -39.26 -0.34 -4.30 16 12 C 0.10 2.80 5.58 -106.80 -0.60 2.21 16 13 C -0.46 -12.33 9.05 -37.86 -0.34 -12.68 16 14 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 15 C 0.07 1.85 5.20 -17.34 -0.09 1.76 16 16 N -0.80 -20.82 10.80 55.54 0.60 -20.22 16 17 Si 0.91 18.84 29.58 -169.99 -5.03 13.81 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 C -0.22 -5.60 9.74 -39.26 -0.38 -5.99 16 22 C -0.08 -1.89 8.60 -39.79 -0.34 -2.23 16 23 C 0.06 0.45 4.41 -3.83 -0.02 0.43 16 24 N -0.53 -3.70 3.97 -234.31 -0.93 -4.63 16 25 C 0.01 0.10 5.47 -3.71 -0.02 0.08 16 26 C 0.06 0.41 7.01 37.21 0.26 0.67 16 27 O -0.39 -3.21 10.83 -35.23 -0.38 -3.59 16 28 C 0.06 0.40 7.01 37.20 0.26 0.66 16 29 C 0.02 0.11 5.60 -3.72 -0.02 0.09 16 30 H 0.07 0.52 7.58 -51.93 -0.39 0.13 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.39 7.30 -51.93 -0.38 0.01 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.39 3.71 7.70 -40.82 -0.31 3.40 16 36 H 0.39 5.46 8.84 -40.82 -0.36 5.10 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 38 H 0.12 3.30 6.08 -52.49 -0.32 2.98 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.09 2.32 8.06 -52.48 -0.42 1.90 16 41 H 0.10 2.58 6.36 -52.49 -0.33 2.25 16 42 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 43 H 0.04 0.32 7.98 -51.93 -0.41 -0.09 16 44 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 45 H 0.09 0.52 6.79 -51.93 -0.35 0.17 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.09 0.47 8.02 -51.93 -0.42 0.05 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -32.31 405.22 -11.41 -43.72 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.24 Total: 10.72 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.19 Total: -10.93 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.75 Total: -46.73 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.31 Total: -16.71 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.31 -11.41 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151713277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.626 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds