Wall clock time and date at job start Wed Apr 1 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46553 * 2 1 4 4 C 1.53001 * 109.46999 * 119.99507 * 2 1 3 5 5 N 1.46501 * 109.46991 * 295.00258 * 4 2 1 6 6 C 1.34783 * 119.99989 * 180.02562 * 5 4 2 7 7 O 1.21581 * 119.99645 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.39244 * 119.99914 * 175.66733 * 8 6 5 10 10 C 1.39472 * 119.83475 * 216.79364 * 9 8 6 11 11 C 1.36380 * 120.16845 * 179.76524 * 10 9 8 12 12 C 1.40872 * 119.82514 * 0.53221 * 11 10 9 13 13 C 1.41159 * 120.15933 * 179.70378 * 12 11 10 14 14 H 1.08008 * 119.99076 * 205.39023 * 13 12 11 15 15 C 1.39887 * 120.00557 * 25.38589 * 13 12 11 16 16 N 1.30886 * 119.99761 * 14.38228 * 15 13 12 17 17 Si 1.86800 * 120.00164 * 194.37906 * 15 13 12 18 18 H 1.48497 * 109.46785 * 60.00155 * 17 15 13 19 19 H 1.48493 * 109.46992 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47189 * 299.99974 * 17 15 13 21 21 C 1.40862 * 119.67209 * 359.72111 * 12 11 10 22 22 C 1.36371 * 119.83194 * 359.97438 * 21 12 11 23 23 C 1.52990 * 109.47483 * 239.99702 * 2 1 3 24 24 N 1.46904 * 109.47382 * 63.64937 * 23 2 1 25 25 C 1.47017 * 110.99327 * 76.27772 * 24 23 2 26 26 C 1.53104 * 109.25580 * 182.39215 * 25 24 23 27 27 O 1.43008 * 109.26063 * 303.15596 * 26 25 24 28 28 C 1.43012 * 113.74034 * 58.66484 * 27 26 25 29 29 C 1.47013 * 111.00545 * 199.91317 * 24 23 2 30 30 H 1.08997 * 109.46837 * 64.79621 * 1 2 3 31 31 H 1.09004 * 109.46751 * 184.79129 * 1 2 3 32 32 H 1.08998 * 109.47611 * 304.79305 * 1 2 3 33 33 H 1.08997 * 109.47386 * 55.00311 * 4 2 1 34 34 H 1.08993 * 109.47145 * 175.00465 * 4 2 1 35 35 H 0.96995 * 120.00396 * 0.02562 * 5 4 2 36 36 H 0.96999 * 120.00385 * 355.67468 * 8 6 5 37 37 H 1.08004 * 119.92053 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.09047 * 180.25726 * 11 10 9 39 39 H 0.97001 * 119.99534 * 180.02562 * 16 15 13 40 40 H 1.08007 * 120.08428 * 179.97438 * 21 12 11 41 41 H 1.08002 * 119.91812 * 179.97438 * 22 21 12 42 42 H 1.09003 * 109.47131 * 303.65361 * 23 2 1 43 43 H 1.08997 * 109.47719 * 183.65533 * 23 2 1 44 44 H 1.09002 * 109.51076 * 62.46197 * 25 24 23 45 45 H 1.09000 * 109.50990 * 302.33070 * 25 24 23 46 46 H 1.08996 * 109.50574 * 183.21749 * 26 25 24 47 47 H 1.09000 * 109.54156 * 63.11009 * 26 25 24 48 48 H 1.08999 * 109.50661 * 61.26575 * 28 27 26 49 49 H 1.09003 * 109.50884 * 181.39426 * 28 27 26 50 50 H 1.09002 * 109.50511 * 297.54984 * 29 24 23 51 51 H 1.09002 * 109.50326 * 57.67107 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0356 2.4424 6 6 1.9963 -0.4128 3.6660 7 8 2.6279 -1.4454 3.7797 8 7 1.6393 0.2831 4.7636 9 6 1.9153 -0.2249 6.0304 10 6 1.0040 -0.0331 7.0686 11 6 1.2652 -0.5318 8.3107 12 6 2.4643 -1.2326 8.5464 13 6 2.7447 -1.7464 9.8310 14 1 3.7682 -1.9064 10.1368 15 6 1.6973 -2.0481 10.7077 16 7 0.4703 -2.1266 10.2588 17 14 2.0497 -2.3392 12.5189 18 1 2.6685 -1.1229 13.1044 19 1 0.7802 -2.6398 13.2281 20 1 2.9808 -3.4870 12.6638 21 6 3.3822 -1.4176 7.4941 22 6 3.1043 -0.9185 6.2558 23 6 2.0401 -0.7213 -1.2491 24 7 1.6238 0.0202 -2.4470 25 6 2.4533 1.2186 -2.6394 26 6 1.9485 1.9913 -3.8610 27 8 1.9662 1.1313 -5.0035 28 6 1.1683 -0.0456 -4.8507 29 6 1.6652 -0.8389 -3.6393 30 1 -0.3633 0.4376 -0.9298 31 1 -0.3633 -1.0241 0.0858 32 1 -0.3634 0.5864 0.8439 33 1 1.6055 -1.7197 1.2953 34 1 3.1263 -0.7993 1.2057 35 1 1.1482 0.8592 2.3517 36 1 1.1899 1.1377 4.6712 37 1 0.0874 0.5089 6.8876 38 1 0.5567 -0.3862 9.1127 39 1 -0.2560 -2.3355 10.8669 40 1 4.3038 -1.9534 7.6675 41 1 3.8073 -1.0592 5.4481 42 1 1.6243 -1.7283 -1.2824 43 1 3.1281 -0.7784 -1.2170 44 1 3.4899 0.9221 -2.7993 45 1 2.3877 1.8526 -1.7552 46 1 2.5954 2.8498 -4.0415 47 1 0.9300 2.3348 -3.6799 48 1 0.1270 0.2380 -4.6978 49 1 1.2509 -0.6603 -5.7471 50 1 2.6892 -1.1685 -3.8151 51 1 1.0243 -1.7070 -3.4848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151713277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:41 Heat of formation + Delta-G solvation = -71.952620 kcal Electronic energy + Delta-G solvation = -29477.394547 eV Core-core repulsion = 25375.427667 eV Total energy + Delta-G solvation = -4101.966880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.40228 -40.58950 -39.32332 -38.08193 -36.32289 -35.89871 -34.76092 -33.38862 -32.11413 -31.44228 -30.66734 -28.86133 -27.73292 -26.52330 -25.05517 -24.93728 -23.35627 -22.60259 -21.73088 -21.50285 -20.96383 -19.41070 -19.06900 -18.27669 -17.55453 -17.11639 -17.04598 -16.74736 -16.30323 -16.14634 -15.97053 -15.79991 -15.70318 -15.50435 -15.30696 -14.80626 -14.62192 -14.46569 -14.06262 -13.95404 -13.62346 -13.60086 -13.46439 -13.16852 -12.98798 -12.81642 -12.74227 -12.46750 -12.46151 -12.30368 -12.07013 -11.95330 -11.82129 -11.60898 -11.44777 -11.41848 -11.19532 -10.99401 -10.66870 -10.63178 -10.06357 -9.44019 -9.39920 -8.79850 -8.56113 -6.26231 0.88017 1.17408 1.40378 1.50450 1.53472 1.78016 2.22092 2.25129 2.71674 2.79129 2.98172 3.43505 3.75105 3.77385 3.89132 3.94250 4.01808 4.07375 4.21608 4.26799 4.35960 4.41780 4.46206 4.54653 4.55944 4.63614 4.72875 4.75243 4.81981 4.84648 4.90251 4.94591 4.95504 5.04510 5.12741 5.14798 5.19011 5.27412 5.33815 5.46356 5.48059 5.54540 5.68498 5.84018 5.94107 5.95589 6.06155 6.13708 6.19926 6.27557 6.40921 6.68407 6.95723 7.02730 7.19585 7.69890 8.36600 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041571 B = 0.001477 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.390624 B =18958.435292 C =19031.901486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 H 0.087 0.913 4 C 0.146 3.854 5 N -0.725 5.725 6 C 0.691 3.309 7 O -0.628 6.628 8 N -0.658 5.658 9 C 0.027 3.973 10 C -0.113 4.113 11 C -0.169 4.169 12 C 0.071 3.929 13 C -0.496 4.496 14 H 0.073 0.927 15 C 0.033 3.967 16 N -0.828 5.828 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.233 4.233 22 C -0.088 4.088 23 C 0.064 3.936 24 N -0.534 5.534 25 C 0.015 3.985 26 C 0.062 3.938 27 O -0.409 6.409 28 C 0.062 3.938 29 C 0.017 3.983 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.411 0.589 36 H 0.414 0.586 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.288 0.712 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.110 0.890 50 H 0.035 0.965 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 8.971 -26.151 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 H 0.106 0.894 4 C 0.021 3.979 5 N -0.383 5.383 6 C 0.392 3.608 7 O -0.508 6.508 8 N -0.306 5.306 9 C -0.067 4.067 10 C -0.133 4.133 11 C -0.189 4.189 12 C 0.069 3.931 13 C -0.526 4.526 14 H 0.092 0.908 15 C -0.181 4.181 16 N -0.454 5.454 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.188 1.188 21 C -0.254 4.254 22 C -0.109 4.109 23 C -0.065 4.065 24 N -0.259 5.259 25 C -0.113 4.113 26 C -0.015 4.015 27 O -0.328 6.328 28 C -0.014 4.014 29 C -0.111 4.111 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.248 0.752 36 H 0.250 0.750 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.128 0.872 50 H 0.053 0.947 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.287 8.177 -26.159 27.604 hybrid contribution 0.592 -0.180 0.959 1.141 sum -2.696 7.997 -25.200 26.576 Atomic orbital electron populations 1.21691 0.93411 1.01611 1.02385 1.21177 0.97513 1.00033 0.91182 0.89437 1.21187 0.99119 0.94815 0.82776 1.44840 1.60969 1.29290 1.03167 1.16226 0.80219 0.82953 0.81430 1.90889 1.46695 1.27114 1.86141 1.41841 1.62882 1.23458 1.02460 1.16999 0.95858 1.09341 0.84506 1.20495 0.97554 1.02283 0.92988 1.20968 0.99685 1.01554 0.96703 1.18001 0.92257 0.89896 0.92969 1.19765 0.94575 1.39418 0.98830 0.90842 1.26755 0.93967 0.92036 1.05338 1.69875 1.01486 1.35409 1.38628 0.85203 0.78795 0.79728 0.75652 1.18279 1.19028 1.18784 1.20787 1.02143 1.08984 0.93441 1.20451 0.95713 0.98975 0.95716 1.22017 0.98073 0.97439 0.88923 1.62147 1.53579 1.07432 1.02782 1.22883 0.94849 0.93306 1.00236 1.22775 1.02039 0.92569 0.84076 1.87962 1.70651 1.34636 1.39581 1.22778 0.94646 0.86085 0.97917 1.22840 1.00750 0.96855 0.90653 0.90827 0.93646 0.92724 0.93018 0.92951 0.75186 0.74954 0.85806 0.86794 0.90099 0.88963 0.87965 0.90143 0.94384 0.94777 0.88417 0.87305 0.91822 0.91886 0.87180 0.94663 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.94 71.98 0.64 -1.07 16 2 C -0.08 -1.05 2.48 -10.80 -0.03 -1.08 16 3 H 0.09 1.00 6.81 -2.38 -0.02 0.98 16 4 C 0.15 3.00 5.06 86.38 0.44 3.44 16 5 N -0.73 -16.58 5.33 -478.54 -2.55 -19.13 16 6 C 0.69 24.08 8.39 179.05 1.50 25.58 16 7 O -0.63 -28.54 13.88 -3.97 -0.06 -28.59 16 8 N -0.66 -22.41 5.30 -316.78 -1.68 -24.09 16 9 C 0.03 1.21 6.27 38.56 0.24 1.46 16 10 C -0.11 -5.14 9.90 22.13 0.22 -4.92 16 11 C -0.17 -8.93 8.63 22.48 0.19 -8.73 16 12 C 0.07 4.01 5.58 -21.28 -0.12 3.90 16 13 C -0.50 -27.59 9.05 23.39 0.21 -27.38 16 14 H 0.07 3.95 7.89 -2.91 -0.02 3.93 16 15 C 0.03 1.70 5.20 85.23 0.44 2.14 16 16 N -0.83 -43.66 10.80 21.82 0.24 -43.42 16 17 Si 0.99 38.69 29.58 68.60 2.03 40.72 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 21 C -0.23 -12.57 9.74 22.48 0.22 -12.35 16 22 C -0.09 -4.43 8.60 22.13 0.19 -4.24 16 23 C 0.06 0.83 4.41 86.30 0.38 1.21 16 24 N -0.53 -6.47 3.97 -895.21 -3.55 -10.03 16 25 C 0.02 0.18 5.47 86.32 0.47 0.65 16 26 C 0.06 0.69 7.01 72.02 0.50 1.20 16 27 O -0.41 -6.27 10.83 -148.98 -1.61 -7.88 16 28 C 0.06 0.68 7.01 72.01 0.50 1.19 16 29 C 0.02 0.19 5.60 86.31 0.48 0.68 16 30 H 0.07 0.91 7.58 -2.39 -0.02 0.90 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.66 7.30 -2.39 -0.02 0.64 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.41 6.39 7.70 -92.71 -0.71 5.68 16 36 H 0.41 10.23 8.84 -92.71 -0.82 9.41 16 37 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.11 6.18 6.08 -2.91 -0.02 6.16 16 39 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 40 H 0.09 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.10 5.15 6.36 -2.91 -0.02 5.13 16 42 H 0.08 1.04 7.85 -2.39 -0.02 1.02 16 43 H 0.04 0.54 7.98 -2.39 -0.02 0.52 16 44 H 0.03 0.46 8.13 -2.39 -0.02 0.44 16 45 H 0.10 0.91 6.79 -2.39 -0.02 0.89 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.04 0.45 8.14 -2.39 -0.02 0.44 16 51 H 0.10 0.89 8.02 -2.39 -0.02 0.87 16 Total: -1.00 -71.70 405.22 -1.27 -72.97 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -0.59 Total: 37.79 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 6.50 Total: -18.34 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -7.55 Total: -96.67 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.67 Total: -36.47 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -71.70 -1.27 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151713277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.019 kcal (2) G-P(sol) polarization free energy of solvation -71.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds