Wall clock time and date at job start Wed Apr 1 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46996 * 2 1 4 4 C 1.46259 * 111.00173 * 63.88756 * 3 2 1 5 5 C 1.47544 * 114.37586 * 148.55550 * 4 3 2 6 6 C 1.54941 * 109.73382 * 62.21853 * 5 4 3 7 7 N 1.44673 * 109.52117 * 290.51751 * 6 5 4 8 8 C 1.34780 * 118.54936 * 269.08707 * 7 6 5 9 9 O 1.21585 * 119.99991 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99840 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99931 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47095 * 180.02562 * 11 10 8 13 13 C 1.38322 * 119.96392 * 269.72258 * 12 11 10 14 14 C 1.38285 * 120.13789 * 180.27220 * 13 12 11 15 15 C 1.38120 * 120.07072 * 0.02562 * 14 13 12 16 16 C 1.38859 * 119.92812 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06843 * 179.97438 * 16 15 14 18 18 C 1.34823 * 117.00065 * 354.75792 * 17 16 15 19 19 H 1.08004 * 119.99762 * 1.99915 * 18 17 16 20 20 C 1.38652 * 120.00243 * 182.00136 * 18 17 16 21 21 N 1.31561 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00208 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47232 * 59.99578 * 22 20 18 24 24 H 1.48506 * 109.47022 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47071 * 299.99804 * 22 20 18 26 26 C 1.38074 * 119.96686 * 90.00249 * 12 11 10 27 27 C 1.47774 * 122.90504 * 89.35946 * 7 6 5 28 28 C 1.44762 * 111.00085 * 300.39032 * 3 2 1 29 29 H 1.09002 * 109.47370 * 57.65404 * 1 2 3 30 30 H 1.09004 * 109.47298 * 177.65135 * 1 2 3 31 31 H 1.08998 * 109.47264 * 297.65305 * 1 2 3 32 32 H 1.09003 * 109.46912 * 239.99497 * 2 1 3 33 33 H 1.08997 * 109.46577 * 120.00172 * 2 1 3 34 34 H 1.09009 * 108.50351 * 27.28460 * 4 3 2 35 35 H 1.09001 * 108.38010 * 269.73028 * 4 3 2 36 36 H 1.08998 * 109.42678 * 302.13138 * 5 4 3 37 37 H 1.09000 * 109.42471 * 182.30090 * 5 4 3 38 38 H 1.09002 * 109.46317 * 170.50691 * 6 5 4 39 39 H 1.08997 * 109.45961 * 50.52826 * 6 5 4 40 40 H 0.97001 * 120.00449 * 0.02562 * 10 8 7 41 41 H 1.09001 * 109.46980 * 60.00272 * 11 10 8 42 42 H 1.09001 * 109.46841 * 299.99821 * 11 10 8 43 43 H 1.07997 * 119.93460 * 0.25436 * 13 12 11 44 44 H 1.08000 * 119.96771 * 179.97438 * 14 13 12 45 45 H 1.07994 * 120.03773 * 180.02562 * 15 14 13 46 46 H 0.97000 * 119.99658 * 180.02562 * 21 20 18 47 47 H 1.08005 * 120.03769 * 359.69712 * 26 12 11 48 48 H 1.09002 * 109.06457 * 78.37271 * 27 7 6 49 49 H 1.09005 * 109.06687 * 197.30047 * 27 7 6 50 50 H 1.08996 * 109.43524 * 337.92794 * 28 3 2 51 51 H 1.08997 * 109.43446 * 97.83862 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6278 2.0795 1.2261 5 6 2.5854 3.1077 1.6761 6 6 2.7025 4.2191 0.6029 7 7 3.3742 3.6938 -0.5658 8 6 4.7153 3.8039 -0.6419 9 8 5.3068 3.3711 -1.6120 10 7 5.4007 4.3938 0.3574 11 6 6.8585 4.5140 0.2745 12 6 7.3765 5.2055 1.5092 13 6 7.5010 6.5829 1.5288 14 6 7.9813 7.2207 2.6579 15 6 8.3388 6.4834 3.7699 16 6 8.2150 5.1005 3.7533 17 8 8.5661 4.3730 4.8444 18 6 9.1290 5.0419 5.8708 19 1 9.2525 6.1134 5.8141 20 6 9.5495 4.3543 6.9990 21 7 9.3986 3.0492 7.0682 22 14 10.3287 5.2811 8.4214 23 1 9.3649 6.2802 8.9485 24 1 10.6876 4.3239 9.4985 25 1 11.5527 5.9761 7.9480 26 6 7.7319 4.4629 2.6177 27 6 2.6543 3.0470 -1.6825 28 6 1.5480 2.1020 -1.1658 29 1 -0.3634 0.5498 -0.8682 30 1 -0.3634 -1.0268 -0.0421 31 1 -0.3634 0.4769 0.9102 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5137 1.3416 2.0203 35 1 0.6622 2.5563 1.0573 36 1 3.5622 2.6499 1.8321 37 1 2.2364 3.5431 2.6124 38 1 3.2751 5.0544 1.0061 39 1 1.7059 4.5623 0.3254 40 1 4.9290 4.7388 1.1316 41 1 7.1254 5.0963 -0.6074 42 1 7.3014 3.5207 0.2019 43 1 7.2228 7.1616 0.6605 44 1 8.0777 8.2963 2.6701 45 1 8.7134 6.9821 4.6515 46 1 9.6924 2.5682 7.8576 47 1 7.6342 3.3874 2.6020 48 1 2.2054 3.8169 -2.3102 49 1 3.3637 2.4726 -2.2784 50 1 1.2847 1.3897 -1.9477 51 1 0.6693 2.6893 -0.8994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159858549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:33 Heat of formation + Delta-G solvation = -10.704836 kcal Electronic energy + Delta-G solvation = -30756.794602 eV Core-core repulsion = 26657.483626 eV Total energy + Delta-G solvation = -4099.310977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.57844 -39.20701 -38.72323 -36.80733 -35.60356 -34.50598 -32.93402 -32.32072 -31.38222 -30.36691 -29.09196 -27.72457 -26.23913 -25.79150 -25.01128 -23.48289 -22.30271 -21.67039 -20.78871 -20.28478 -19.50342 -18.34523 -17.52171 -17.01992 -16.76580 -16.17182 -15.64707 -15.44497 -15.07038 -15.01291 -14.65288 -14.44049 -14.41095 -14.07784 -13.81393 -13.67388 -13.58225 -13.30395 -13.26249 -12.90249 -12.58613 -12.44480 -12.37398 -12.19438 -12.03431 -11.72518 -11.65156 -11.57432 -11.33885 -11.22359 -11.08683 -10.90780 -10.85345 -10.78418 -10.67258 -10.47853 -9.92605 -9.39868 -8.93369 -8.87383 -8.55560 -8.40424 -8.21584 -7.30596 -6.47642 -4.06867 1.92012 2.29517 2.85083 3.11107 3.12353 3.15107 3.40165 3.60502 3.93646 4.09363 4.53918 4.57182 4.63104 4.69583 4.71425 4.81051 4.94993 4.99111 5.05844 5.08480 5.12918 5.22705 5.24376 5.32476 5.35142 5.51905 5.53974 5.57316 5.57850 5.62797 5.71538 5.79238 5.83073 5.83663 5.89151 6.01889 6.10598 6.10923 6.28585 6.55537 6.59929 6.69123 6.85088 6.86147 6.91064 6.99335 7.04039 7.23406 7.30044 7.37918 7.73843 7.96357 8.11481 8.77400 8.97598 9.66749 10.70127 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002370 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.391067 B =11812.279119 C =13260.903557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 N -0.529 5.529 4 C 0.064 3.936 5 C -0.143 4.143 6 C 0.115 3.885 7 N -0.613 5.613 8 C 0.706 3.294 9 O -0.597 6.597 10 N -0.737 5.737 11 C 0.186 3.814 12 C -0.071 4.071 13 C -0.195 4.195 14 C -0.077 4.077 15 C -0.227 4.227 16 C 0.150 3.850 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.169 4.169 27 C 0.139 3.861 28 C 0.045 3.955 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.398 0.602 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.271 0.729 47 H 0.118 0.882 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.235 0.474 -12.693 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.075 4.075 3 N -0.252 5.252 4 C -0.064 4.064 5 C -0.183 4.183 6 C -0.010 4.010 7 N -0.349 5.349 8 C 0.407 3.593 9 O -0.476 6.476 10 N -0.394 5.394 11 C 0.062 3.938 12 C -0.072 4.072 13 C -0.214 4.214 14 C -0.095 4.095 15 C -0.246 4.246 16 C 0.096 3.904 17 O -0.080 6.080 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.189 4.189 27 C 0.015 3.985 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.136 0.864 48 H 0.077 0.923 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.259 -0.305 -13.198 21.729 hybrid contribution -0.766 0.718 1.353 1.713 sum -18.025 0.413 -11.845 21.573 Atomic orbital electron populations 1.22497 0.98165 1.02382 1.01919 1.22297 0.92615 0.89451 1.03145 1.60955 1.60381 1.01911 1.01917 1.20931 0.96464 0.96765 0.92221 1.21522 1.01815 0.96691 0.98237 1.21474 0.98131 0.95483 0.85925 1.46677 1.04802 1.62403 1.21032 1.15905 0.81472 0.78781 0.83120 1.90874 1.68248 1.54996 1.33474 1.45425 1.07774 1.63747 1.22430 1.19979 0.78304 1.00213 0.95261 1.19300 1.00381 0.93505 0.93970 1.20485 1.08685 0.93443 0.98834 1.20740 0.97295 0.98527 0.92940 1.21227 1.09283 0.93940 1.00179 1.19318 0.92679 0.90301 0.88053 1.83979 1.67627 1.35134 1.21215 1.21273 1.39052 0.92724 0.93880 0.89108 1.25280 0.97119 0.95835 0.98228 1.70031 1.43730 1.06587 1.29281 0.85787 0.79430 0.78706 0.79546 1.19518 1.20263 1.19475 1.20093 1.07525 0.99513 0.91789 1.21816 0.94487 0.94733 0.87481 1.22457 0.95750 0.96541 0.93760 0.92594 0.92107 0.92634 0.90534 0.90552 0.91628 0.94820 0.90312 0.90059 0.90664 0.90876 0.76617 0.91286 0.91127 0.87534 0.87352 0.85526 0.91928 0.86398 0.92330 0.88896 0.90268 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 9.42 37.16 0.35 -0.84 16 2 C 0.05 0.41 5.70 -3.82 -0.02 0.39 16 3 N -0.53 -4.94 4.38 -239.35 -1.05 -5.99 16 4 C 0.06 0.55 3.84 -6.80 -0.03 0.52 16 5 C -0.14 -1.33 6.02 -28.34 -0.17 -1.50 16 6 C 0.11 1.05 5.22 -3.99 -0.02 1.03 16 7 N -0.61 -7.16 2.53 -177.72 -0.45 -7.61 16 8 C 0.71 10.71 8.22 -86.92 -0.71 10.00 16 9 O -0.60 -11.22 15.62 5.29 0.08 -11.14 16 10 N -0.74 -10.52 5.38 -66.41 -0.36 -10.88 16 11 C 0.19 2.90 5.80 -5.19 -0.03 2.87 16 12 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 13 C -0.19 -3.22 9.70 -39.53 -0.38 -3.60 16 14 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 15 C -0.23 -4.74 9.16 -39.40 -0.36 -5.10 16 16 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 17 O -0.18 -4.92 9.76 0.05 0.00 -4.92 16 18 C -0.39 -10.77 9.49 30.89 0.29 -10.47 16 19 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 22 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.17 -3.46 9.64 -39.39 -0.38 -3.84 16 27 C 0.14 1.41 6.49 -2.61 -0.02 1.39 16 28 C 0.04 0.36 4.29 -4.24 -0.02 0.34 16 29 H 0.06 0.33 6.85 -51.93 -0.36 -0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.36 7.31 -51.93 -0.38 -0.02 16 32 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.08 0.63 7.93 -51.93 -0.41 0.21 16 34 H 0.07 0.56 7.51 -51.92 -0.39 0.17 16 35 H 0.03 0.26 7.09 -51.93 -0.37 -0.11 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.67 6.13 -51.93 -0.32 0.35 16 39 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 40 H 0.40 5.14 6.04 -40.82 -0.25 4.89 16 41 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 42 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.13 2.65 5.65 -52.49 -0.30 2.35 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.09 1.16 6.96 -51.93 -0.36 0.79 16 50 H 0.08 0.54 7.16 -51.93 -0.37 0.17 16 51 H 0.04 0.30 7.13 -51.93 -0.37 -0.07 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -32.47 400.97 -10.71 -43.18 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.92 Total: 8.47 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.80 Total: -8.10 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -1.10 Total: -48.70 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.08 Total: -16.06 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.47 -10.71 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159858549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.476 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds