Wall clock time and date at job start Wed Apr 1 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.46996 * 2 1 4 4 C 1.46259 * 111.00173 * 63.88756 * 3 2 1 5 5 C 1.47544 * 114.37586 * 148.55550 * 4 3 2 6 6 C 1.54941 * 109.73382 * 62.21853 * 5 4 3 7 7 N 1.44673 * 109.52117 * 290.51751 * 6 5 4 8 8 C 1.34780 * 118.54936 * 269.08707 * 7 6 5 9 9 O 1.21585 * 119.99991 * 179.97438 * 8 7 6 10 10 N 1.34773 * 119.99840 * 359.97438 * 8 7 6 11 11 C 1.46504 * 119.99931 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47095 * 180.02562 * 11 10 8 13 13 C 1.38322 * 119.96392 * 269.72258 * 12 11 10 14 14 C 1.38285 * 120.13789 * 180.27220 * 13 12 11 15 15 C 1.38120 * 120.07072 * 0.02562 * 14 13 12 16 16 C 1.38859 * 119.92812 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06843 * 179.97438 * 16 15 14 18 18 C 1.34823 * 117.00065 * 354.75792 * 17 16 15 19 19 H 1.08004 * 119.99762 * 1.99915 * 18 17 16 20 20 C 1.38652 * 120.00243 * 182.00136 * 18 17 16 21 21 N 1.31561 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00208 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47232 * 59.99578 * 22 20 18 24 24 H 1.48506 * 109.47022 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47071 * 299.99804 * 22 20 18 26 26 C 1.38074 * 119.96686 * 90.00249 * 12 11 10 27 27 C 1.47774 * 122.90504 * 89.35946 * 7 6 5 28 28 C 1.44762 * 111.00085 * 300.39032 * 3 2 1 29 29 H 1.09002 * 109.47370 * 57.65404 * 1 2 3 30 30 H 1.09004 * 109.47298 * 177.65135 * 1 2 3 31 31 H 1.08998 * 109.47264 * 297.65305 * 1 2 3 32 32 H 1.09003 * 109.46912 * 239.99497 * 2 1 3 33 33 H 1.08997 * 109.46577 * 120.00172 * 2 1 3 34 34 H 1.09009 * 108.50351 * 27.28460 * 4 3 2 35 35 H 1.09001 * 108.38010 * 269.73028 * 4 3 2 36 36 H 1.08998 * 109.42678 * 302.13138 * 5 4 3 37 37 H 1.09000 * 109.42471 * 182.30090 * 5 4 3 38 38 H 1.09002 * 109.46317 * 170.50691 * 6 5 4 39 39 H 1.08997 * 109.45961 * 50.52826 * 6 5 4 40 40 H 0.97001 * 120.00449 * 0.02562 * 10 8 7 41 41 H 1.09001 * 109.46980 * 60.00272 * 11 10 8 42 42 H 1.09001 * 109.46841 * 299.99821 * 11 10 8 43 43 H 1.07997 * 119.93460 * 0.25436 * 13 12 11 44 44 H 1.08000 * 119.96771 * 179.97438 * 14 13 12 45 45 H 1.07994 * 120.03773 * 180.02562 * 15 14 13 46 46 H 0.97000 * 119.99658 * 180.02562 * 21 20 18 47 47 H 1.08005 * 120.03769 * 359.69712 * 26 12 11 48 48 H 1.09002 * 109.06457 * 78.37271 * 27 7 6 49 49 H 1.09005 * 109.06687 * 197.30047 * 27 7 6 50 50 H 1.08996 * 109.43524 * 337.92794 * 28 3 2 51 51 H 1.08997 * 109.43446 * 97.83862 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6278 2.0795 1.2261 5 6 2.5854 3.1077 1.6761 6 6 2.7025 4.2191 0.6029 7 7 3.3742 3.6938 -0.5658 8 6 4.7153 3.8039 -0.6419 9 8 5.3068 3.3711 -1.6120 10 7 5.4007 4.3938 0.3574 11 6 6.8585 4.5140 0.2745 12 6 7.3765 5.2055 1.5092 13 6 7.5010 6.5829 1.5288 14 6 7.9813 7.2207 2.6579 15 6 8.3388 6.4834 3.7699 16 6 8.2150 5.1005 3.7533 17 8 8.5661 4.3730 4.8444 18 6 9.1290 5.0419 5.8708 19 1 9.2525 6.1134 5.8141 20 6 9.5495 4.3543 6.9990 21 7 9.3986 3.0492 7.0682 22 14 10.3287 5.2811 8.4214 23 1 9.3649 6.2802 8.9485 24 1 10.6876 4.3239 9.4985 25 1 11.5527 5.9761 7.9480 26 6 7.7319 4.4629 2.6177 27 6 2.6543 3.0470 -1.6825 28 6 1.5480 2.1020 -1.1658 29 1 -0.3634 0.5498 -0.8682 30 1 -0.3634 -1.0268 -0.0421 31 1 -0.3634 0.4769 0.9102 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5137 1.3416 2.0203 35 1 0.6622 2.5563 1.0573 36 1 3.5622 2.6499 1.8321 37 1 2.2364 3.5431 2.6124 38 1 3.2751 5.0544 1.0061 39 1 1.7059 4.5623 0.3254 40 1 4.9290 4.7388 1.1316 41 1 7.1254 5.0963 -0.6074 42 1 7.3014 3.5207 0.2019 43 1 7.2228 7.1616 0.6605 44 1 8.0777 8.2963 2.6701 45 1 8.7134 6.9821 4.6515 46 1 9.6924 2.5682 7.8576 47 1 7.6342 3.3874 2.6020 48 1 2.2054 3.8169 -2.3102 49 1 3.3637 2.4726 -2.2784 50 1 1.2847 1.3897 -1.9477 51 1 0.6693 2.6893 -0.8994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159858549.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:32 Heat of formation + Delta-G solvation = -31.950676 kcal Electronic energy + Delta-G solvation = -30757.715891 eV Core-core repulsion = 26657.483626 eV Total energy + Delta-G solvation = -4100.232265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.60172 -40.78882 -39.70064 -38.46177 -36.55135 -35.80787 -34.27656 -33.74380 -32.44558 -31.46419 -30.69331 -28.56465 -27.49074 -26.98430 -26.56731 -24.17321 -23.32207 -23.16664 -22.37493 -21.06064 -20.53178 -19.68976 -19.10969 -18.54877 -17.79392 -17.04670 -16.78464 -16.53495 -16.45540 -16.21996 -16.07648 -15.83805 -15.51300 -15.27761 -15.05554 -15.03808 -14.44392 -14.38055 -14.35650 -14.07711 -13.83651 -13.65567 -13.50737 -13.25790 -13.06098 -12.97610 -12.86785 -12.52029 -12.44568 -12.38736 -12.32183 -12.25983 -12.13449 -11.86671 -11.75161 -11.56049 -11.22652 -11.14974 -10.79053 -10.17525 -9.75803 -9.39972 -9.17119 -9.02429 -8.45740 -6.14105 0.38742 0.71802 1.36267 1.46600 1.52420 1.79101 2.18405 2.22948 2.77357 2.93200 3.10264 3.24368 3.41243 3.83951 3.84883 3.99150 4.00853 4.05806 4.10861 4.16154 4.31208 4.32405 4.40250 4.44691 4.53023 4.54725 4.57827 4.62485 4.66689 4.68489 4.73980 4.81996 4.88784 4.94193 4.98466 5.00514 5.03552 5.07153 5.12557 5.26815 5.27913 5.33566 5.47107 5.63552 5.69606 5.71874 5.73861 5.94894 6.02772 6.18108 6.22168 6.28752 6.98857 7.01522 7.60896 7.79462 8.77288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.002370 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.391067 B =11812.279119 C =13260.903557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 N -0.554 5.554 4 C 0.064 3.936 5 C -0.140 4.140 6 C 0.112 3.888 7 N -0.605 5.605 8 C 0.700 3.300 9 O -0.638 6.638 10 N -0.732 5.732 11 C 0.193 3.807 12 C -0.057 4.057 13 C -0.167 4.167 14 C -0.068 4.068 15 C -0.233 4.233 16 C 0.113 3.887 17 O -0.232 6.232 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.180 4.180 27 C 0.134 3.866 28 C 0.052 3.948 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.405 0.595 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.122 0.878 46 H 0.272 0.728 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.268 3.546 -13.928 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.074 4.074 3 N -0.278 5.278 4 C -0.063 4.063 5 C -0.179 4.179 6 C -0.012 4.012 7 N -0.341 5.341 8 C 0.401 3.599 9 O -0.520 6.520 10 N -0.389 5.389 11 C 0.069 3.931 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.086 4.086 15 C -0.253 4.253 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.122 0.878 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.200 4.200 27 C 0.011 3.989 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.243 0.757 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.121 0.879 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.109 0.891 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.353 2.804 -14.464 24.323 hybrid contribution -0.266 -0.162 1.412 1.446 sum -19.619 2.642 -13.052 23.712 Atomic orbital electron populations 1.22396 0.96516 1.02929 1.02150 1.22258 0.93926 0.88672 1.02555 1.60902 1.61520 1.02728 1.02640 1.20917 0.96947 0.96530 0.91923 1.21505 1.00210 0.96994 0.99221 1.21674 0.99363 0.95270 0.84844 1.46788 1.03650 1.61621 1.21994 1.16105 0.82595 0.78575 0.82603 1.90845 1.69438 1.56698 1.35062 1.45248 1.07148 1.63813 1.22651 1.19831 0.79119 0.99438 0.94679 1.19428 0.99109 0.94085 0.93131 1.20985 1.05190 0.92924 0.99543 1.21163 0.95456 1.00452 0.91517 1.21370 1.09435 0.92984 1.01485 1.19823 0.94173 0.91733 0.87951 1.83948 1.70252 1.36874 1.22816 1.21798 1.39235 0.93519 0.94299 0.87835 1.26584 0.97580 0.96780 1.01147 1.70190 1.46559 1.08737 1.30529 0.84657 0.78788 0.77429 0.75423 1.17927 1.19896 1.18213 1.20180 1.08208 0.99253 0.92381 1.21982 0.94322 0.95440 0.87132 1.22419 0.95239 0.96471 0.93621 0.91870 0.91506 0.92691 0.90767 0.91603 0.92053 0.92865 0.93850 0.88471 0.90270 0.87999 0.75739 0.89884 0.92782 0.83462 0.83194 0.86023 0.91913 0.87912 0.90247 0.91760 0.89088 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.42 71.98 0.68 -1.24 16 2 C 0.05 0.80 5.70 86.30 0.49 1.29 16 3 N -0.55 -9.78 4.38 -911.16 -3.99 -13.76 16 4 C 0.06 1.01 3.84 84.72 0.33 1.33 16 5 C -0.14 -2.45 6.02 29.55 0.18 -2.27 16 6 C 0.11 1.78 5.22 87.38 0.46 2.24 16 7 N -0.61 -13.32 2.53 -834.43 -2.11 -15.43 16 8 C 0.70 20.85 8.22 179.05 1.47 22.32 16 9 O -0.64 -24.14 15.62 -3.99 -0.06 -24.20 16 10 N -0.73 -20.17 5.38 -482.29 -2.60 -22.77 16 11 C 0.19 5.84 5.80 85.63 0.50 6.33 16 12 C -0.06 -1.88 5.25 -19.88 -0.10 -1.98 16 13 C -0.17 -4.85 9.70 22.30 0.22 -4.64 16 14 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 15 C -0.23 -9.60 9.16 22.39 0.21 -9.40 16 16 C 0.11 5.50 6.65 22.58 0.15 5.65 16 17 O -0.23 -13.80 9.76 -22.74 -0.22 -14.02 16 18 C -0.41 -23.61 9.49 67.92 0.64 -22.96 16 19 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 21 N -0.92 -56.52 13.67 21.61 0.30 -56.22 16 22 Si 1.02 42.25 29.55 68.60 2.03 44.27 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 C -0.18 -7.60 9.64 22.39 0.22 -7.39 16 27 C 0.13 2.53 6.49 86.61 0.56 3.10 16 28 C 0.05 0.72 4.29 87.18 0.37 1.09 16 29 H 0.06 0.59 6.85 -2.39 -0.02 0.57 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 31 H 0.05 0.60 7.31 -2.39 -0.02 0.58 16 32 H 0.07 1.12 8.07 -2.39 -0.02 1.10 16 33 H 0.07 1.10 7.93 -2.39 -0.02 1.08 16 34 H 0.06 1.00 7.51 -2.38 -0.02 0.98 16 35 H 0.05 0.64 7.09 -2.39 -0.02 0.62 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.21 6.13 -2.39 -0.01 1.19 16 39 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 40 H 0.40 9.92 6.04 -92.71 -0.56 9.36 16 41 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 42 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 43 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 44 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 45 H 0.12 5.07 5.65 -2.91 -0.02 5.05 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.60 6.96 -2.38 -0.02 1.59 16 50 H 0.09 1.06 7.16 -2.39 -0.02 1.04 16 51 H 0.06 0.65 7.13 -2.39 -0.02 0.63 16 Total: -1.00 -76.66 400.97 0.78 -75.88 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.38 Total: 35.55 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 7.05 Total: -9.29 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -8.40 Total: -108.18 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.28 Total: -38.22 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -76.66 0.78 -75.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159858549.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.930 kcal (2) G-P(sol) polarization free energy of solvation -76.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds