Wall clock time and date at job start Wed Apr 1 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46998 * 2 1 4 4 C 1.53006 * 109.46992 * 119.99859 * 2 1 3 5 5 N 1.46491 * 109.46931 * 65.54809 * 4 2 1 6 6 C 1.34783 * 120.00054 * 175.76711 * 5 4 2 7 7 O 1.21590 * 119.99792 * 359.71694 * 6 5 4 8 8 N 1.34770 * 120.00243 * 179.72364 * 6 5 4 9 9 C 1.46502 * 119.99998 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.38305 * 119.93019 * 269.72941 * 10 9 8 12 12 C 1.38095 * 120.06725 * 179.72602 * 11 10 9 13 13 C 1.38886 * 119.92937 * 0.56960 * 12 11 10 14 14 O 1.35755 * 120.06552 * 179.68698 * 13 12 11 15 15 C 1.34834 * 116.99346 * 185.64244 * 14 13 12 16 16 H 1.07990 * 120.00343 * 3.76291 * 15 14 13 17 17 C 1.38653 * 119.99336 * 183.76856 * 15 14 13 18 18 N 1.31559 * 120.00484 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99730 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47208 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47008 * 120.00072 * 19 17 15 22 22 H 1.48495 * 109.47189 * 240.00046 * 19 17 15 23 23 C 1.38879 * 119.86350 * 359.70172 * 13 12 11 24 24 C 1.38100 * 119.92770 * 0.02562 * 23 13 12 25 25 N 1.46896 * 109.47388 * 239.99665 * 2 1 3 26 26 C 1.46898 * 111.00099 * 179.68407 * 25 2 1 27 27 C 1.46905 * 110.99835 * 55.73234 * 25 2 1 28 28 C 1.53000 * 117.49832 * 248.74704 * 27 25 2 29 29 C 1.52997 * 117.50133 * 180.08873 * 27 25 2 30 30 H 1.08999 * 109.47265 * 300.00202 * 1 2 3 31 31 H 1.09003 * 109.46972 * 59.99845 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46958 * 305.54515 * 4 2 1 34 34 H 1.09001 * 109.46671 * 185.54858 * 4 2 1 35 35 H 0.97001 * 120.00273 * 355.48264 * 5 4 2 36 36 H 0.97001 * 120.00032 * 359.97438 * 8 6 5 37 37 H 1.08998 * 109.47236 * 299.99861 * 9 8 6 38 38 H 1.09001 * 109.46912 * 60.00175 * 9 8 6 39 39 H 1.08001 * 119.96512 * 359.97438 * 11 10 9 40 40 H 1.07998 * 120.03550 * 180.27157 * 12 11 10 41 41 H 0.97000 * 119.99955 * 180.02562 * 18 17 15 42 42 H 1.07990 * 120.03440 * 179.97438 * 23 13 12 43 43 H 1.08001 * 119.96416 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47212 * 60.80233 * 26 25 2 45 45 H 1.09002 * 109.46921 * 180.80362 * 26 25 2 46 46 H 1.09006 * 109.47105 * 300.80412 * 26 25 2 47 47 H 1.09007 * 115.54869 * 34.41811 * 27 25 2 48 48 H 1.08999 * 117.49576 * 0.02562 * 28 27 25 49 49 H 1.09006 * 117.49592 * 145.01639 * 28 27 25 50 50 H 1.09000 * 117.50064 * 214.98510 * 29 27 25 51 51 H 1.09004 * 117.49773 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6637 -2.1355 1.1844 6 6 2.0817 -2.9887 2.1404 7 8 2.7755 -2.5855 3.0540 8 7 1.7310 -4.2887 2.0838 9 6 2.1859 -5.2161 3.1226 10 6 1.6596 -6.5973 2.8285 11 6 0.4379 -6.9939 3.3413 12 6 -0.0496 -8.2569 3.0689 13 6 0.6937 -9.1333 2.2888 14 8 0.2199 -10.3778 2.0246 15 6 1.0407 -11.2170 1.3613 16 1 2.0470 -10.9090 1.1191 17 6 0.5926 -12.4755 0.9902 18 7 -0.6331 -12.8510 1.2856 19 14 1.7295 -13.6381 0.0706 20 1 3.0453 -12.9820 -0.1376 21 1 1.9159 -14.8791 0.8645 22 1 1.1313 -13.9775 -1.2454 23 6 1.9227 -8.7340 1.7801 24 6 2.4021 -7.4676 2.0514 25 7 2.0197 -0.6925 -1.1993 26 6 3.4881 -0.7056 -1.2370 27 6 1.4671 -0.0879 -2.4189 28 6 0.4626 -0.9143 -3.2244 29 6 1.8803 -0.6981 -3.7597 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.5978 -0.2679 2.1365 34 1 3.1254 -0.6360 1.3003 35 1 1.1102 -2.4572 0.4556 36 1 1.1773 -4.6104 1.3551 37 1 3.2755 -5.2379 3.1385 38 1 1.8149 -4.8853 4.0927 39 1 -0.1372 -6.3138 3.9521 40 1 -1.0057 -8.5646 3.4659 41 1 -0.9464 -13.7316 1.0262 42 1 2.5031 -9.4133 1.1736 43 1 3.3576 -7.1564 1.6557 44 1 3.8693 -1.2334 -0.3629 45 1 3.8238 -1.2117 -2.1421 46 1 3.8607 0.3188 -1.2341 47 1 1.3166 0.9911 -2.3820 48 1 0.2114 -1.9064 -2.8493 49 1 -0.3487 -0.3789 -3.7178 50 1 2.0013 -0.0207 -4.6050 51 1 2.5624 -1.5480 -3.7369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171684109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:51 Heat of formation + Delta-G solvation = 1.562778 kcal Electronic energy + Delta-G solvation = -29635.565674 eV Core-core repulsion = 25536.786661 eV Total energy + Delta-G solvation = -4098.779013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.13637 -39.26666 -38.90708 -36.92122 -36.12402 -34.24715 -33.54871 -32.34537 -31.25265 -30.25432 -29.75571 -27.11440 -25.76230 -25.54993 -24.45021 -22.64082 -22.02389 -21.84195 -21.00939 -20.57465 -19.98136 -18.44414 -18.04241 -17.08723 -16.94744 -16.24302 -15.67920 -15.52383 -15.31117 -14.80755 -14.66546 -14.52553 -14.25718 -14.08108 -13.86456 -13.64274 -13.60465 -13.35676 -13.22714 -12.90184 -12.75672 -12.65052 -12.50521 -12.04563 -11.99110 -11.73711 -11.68367 -11.62953 -11.38114 -11.36031 -10.96414 -10.76111 -10.73980 -10.63637 -10.51442 -10.46423 -10.10243 -9.42607 -9.18038 -8.90208 -8.75489 -8.63313 -8.25545 -7.30693 -6.51924 -4.10386 2.06977 2.15771 2.93552 3.09720 3.10400 3.15993 3.29462 3.37298 3.42176 3.91393 4.35122 4.38054 4.51981 4.55909 4.61063 4.65940 4.79077 4.88437 4.95107 5.05223 5.15067 5.17155 5.27810 5.29058 5.33550 5.37644 5.45166 5.48039 5.50508 5.53776 5.60969 5.70510 5.70928 5.83536 5.86053 5.86299 5.98885 6.15147 6.38549 6.44710 6.62128 6.63411 6.68466 6.71656 6.83252 6.96617 7.08489 7.19685 7.31006 7.37165 7.74271 7.93031 8.18030 8.74752 8.93718 9.62310 10.65794 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.001956 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.510381 B =14314.924964 C =15617.161650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 H 0.056 0.944 4 C 0.148 3.852 5 N -0.736 5.736 6 C 0.700 3.300 7 O -0.604 6.604 8 N -0.738 5.738 9 C 0.199 3.801 10 C -0.212 4.212 11 C -0.054 4.054 12 C -0.196 4.196 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.392 4.392 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.237 4.237 24 C -0.050 4.050 25 N -0.508 5.508 26 C 0.023 3.977 27 C 0.006 3.994 28 C -0.161 4.161 29 C -0.176 4.176 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.270 0.730 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.026 0.974 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 25.544 -7.235 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 H 0.074 0.926 4 C 0.023 3.977 5 N -0.393 5.393 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.393 5.393 9 C 0.076 3.924 10 C -0.214 4.214 11 C -0.073 4.073 12 C -0.215 4.215 13 C 0.105 3.895 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.256 4.256 24 C -0.069 4.069 25 N -0.232 5.232 26 C -0.125 4.125 27 C -0.103 4.103 28 C -0.199 4.199 29 C -0.214 4.214 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.237 0.763 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.126 0.874 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.106 0.894 48 H 0.120 0.880 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.642 25.096 -6.323 26.136 hybrid contribution 0.389 -0.088 -1.285 1.346 sum 4.031 25.009 -7.608 26.449 Atomic orbital electron populations 1.21849 0.93441 1.02963 1.01967 1.21960 0.96505 0.95771 0.89528 0.92633 1.21160 1.00007 0.80456 0.96085 1.44922 1.57661 1.08281 1.28446 1.16041 0.80387 0.81143 0.82458 1.90897 1.43463 1.77506 1.36435 1.45467 1.56792 1.06781 1.30261 1.19797 0.98258 0.84745 0.89622 1.19238 0.98178 0.95709 1.08259 1.20538 0.94432 0.94763 0.97528 1.20208 1.01829 0.94236 1.05243 1.19445 0.91828 0.86114 0.92068 1.83988 1.41242 1.17291 1.65165 1.21398 0.95383 0.94460 1.35560 0.88896 1.25314 0.96876 0.97011 0.97325 1.70046 1.15767 1.20310 1.43305 0.85633 0.79274 0.79600 0.78855 1.19041 1.20077 1.20089 1.21161 0.98749 0.97804 1.07908 1.20648 0.97878 0.92899 0.95464 1.61791 1.08239 1.52953 1.00252 1.22424 0.86732 1.00067 1.03260 1.22362 1.04461 0.95341 0.88142 1.23095 0.92385 1.02119 1.02331 1.23089 0.99124 1.03437 0.95722 0.91935 0.92170 0.91607 0.91439 0.91649 0.76294 0.76929 0.91913 0.91857 0.86959 0.86419 0.91957 0.85460 0.87415 0.90725 0.91179 0.95587 0.89422 0.88008 0.88922 0.88841 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.89 37.15 0.33 -0.55 16 2 C 0.07 0.47 2.30 -67.71 -0.16 0.32 16 3 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 4 C 0.15 1.31 4.75 -4.04 -0.02 1.30 16 5 N -0.74 -7.47 5.14 -65.23 -0.34 -7.80 16 6 C 0.70 9.63 8.57 -86.92 -0.74 8.89 16 7 O -0.60 -10.64 16.34 5.29 0.09 -10.56 16 8 N -0.74 -9.59 5.55 -66.41 -0.37 -9.96 16 9 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 10 C -0.21 -3.44 5.25 -104.57 -0.55 -3.99 16 11 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 12 C -0.20 -3.96 9.99 -39.39 -0.39 -4.35 16 13 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 14 O -0.17 -4.84 9.76 0.02 0.00 -4.84 16 15 C -0.39 -10.68 9.46 30.89 0.29 -10.39 16 16 H 0.09 2.35 5.26 -52.49 -0.28 2.07 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 19 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.24 -4.94 9.14 -39.40 -0.36 -5.30 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 N -0.51 -3.57 4.26 -226.90 -0.97 -4.53 16 26 C 0.02 0.16 9.06 60.06 0.54 0.71 16 27 C 0.01 0.04 3.74 -67.71 -0.25 -0.22 16 28 C -0.16 -1.00 10.42 -26.70 -0.28 -1.28 16 29 C -0.18 -1.07 9.72 -26.70 -0.26 -1.33 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 7.01 -51.93 -0.36 -0.02 16 32 H 0.06 0.45 7.12 -51.93 -0.37 0.08 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.65 6.74 -51.93 -0.35 0.30 16 35 H 0.40 3.57 7.29 -40.82 -0.30 3.27 16 36 H 0.40 4.63 8.48 -40.82 -0.35 4.28 16 37 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.68 5.69 -52.49 -0.30 2.38 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.07 0.63 6.48 -51.93 -0.34 0.30 16 45 H 0.07 0.49 6.74 -51.93 -0.35 0.14 16 46 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.52 8.03 -51.93 -0.42 0.11 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.67 7.25 -51.93 -0.38 0.29 16 LS Contribution 415.96 15.07 6.27 6.27 Total: -1.00 -31.45 415.96 -10.57 -42.01 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.98 Total: 9.78 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.00 Total: -11.47 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.91 Total: -46.27 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -31.45 -10.57 -42.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171684109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.575 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds