Wall clock time and date at job start Wed Apr 1 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46998 * 2 1 4 4 C 1.53006 * 109.46992 * 119.99859 * 2 1 3 5 5 N 1.46491 * 109.46931 * 65.54809 * 4 2 1 6 6 C 1.34783 * 120.00054 * 175.76711 * 5 4 2 7 7 O 1.21590 * 119.99792 * 359.71694 * 6 5 4 8 8 N 1.34770 * 120.00243 * 179.72364 * 6 5 4 9 9 C 1.46502 * 119.99998 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47106 * 179.97438 * 9 8 6 11 11 C 1.38305 * 119.93019 * 269.72941 * 10 9 8 12 12 C 1.38095 * 120.06725 * 179.72602 * 11 10 9 13 13 C 1.38886 * 119.92937 * 0.56960 * 12 11 10 14 14 O 1.35755 * 120.06552 * 179.68698 * 13 12 11 15 15 C 1.34834 * 116.99346 * 185.64244 * 14 13 12 16 16 H 1.07990 * 120.00343 * 3.76291 * 15 14 13 17 17 C 1.38653 * 119.99336 * 183.76856 * 15 14 13 18 18 N 1.31559 * 120.00484 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99730 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47208 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47008 * 120.00072 * 19 17 15 22 22 H 1.48495 * 109.47189 * 240.00046 * 19 17 15 23 23 C 1.38879 * 119.86350 * 359.70172 * 13 12 11 24 24 C 1.38100 * 119.92770 * 0.02562 * 23 13 12 25 25 N 1.46896 * 109.47388 * 239.99665 * 2 1 3 26 26 C 1.46898 * 111.00099 * 179.68407 * 25 2 1 27 27 C 1.46905 * 110.99835 * 55.73234 * 25 2 1 28 28 C 1.53000 * 117.49832 * 248.74704 * 27 25 2 29 29 C 1.52997 * 117.50133 * 180.08873 * 27 25 2 30 30 H 1.08999 * 109.47265 * 300.00202 * 1 2 3 31 31 H 1.09003 * 109.46972 * 59.99845 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46958 * 305.54515 * 4 2 1 34 34 H 1.09001 * 109.46671 * 185.54858 * 4 2 1 35 35 H 0.97001 * 120.00273 * 355.48264 * 5 4 2 36 36 H 0.97001 * 120.00032 * 359.97438 * 8 6 5 37 37 H 1.08998 * 109.47236 * 299.99861 * 9 8 6 38 38 H 1.09001 * 109.46912 * 60.00175 * 9 8 6 39 39 H 1.08001 * 119.96512 * 359.97438 * 11 10 9 40 40 H 1.07998 * 120.03550 * 180.27157 * 12 11 10 41 41 H 0.97000 * 119.99955 * 180.02562 * 18 17 15 42 42 H 1.07990 * 120.03440 * 179.97438 * 23 13 12 43 43 H 1.08001 * 119.96416 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47212 * 60.80233 * 26 25 2 45 45 H 1.09002 * 109.46921 * 180.80362 * 26 25 2 46 46 H 1.09006 * 109.47105 * 300.80412 * 26 25 2 47 47 H 1.09007 * 115.54869 * 34.41811 * 27 25 2 48 48 H 1.08999 * 117.49576 * 0.02562 * 28 27 25 49 49 H 1.09006 * 117.49592 * 145.01639 * 28 27 25 50 50 H 1.09000 * 117.50064 * 214.98510 * 29 27 25 51 51 H 1.09004 * 117.49773 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6637 -2.1355 1.1844 6 6 2.0817 -2.9887 2.1404 7 8 2.7755 -2.5855 3.0540 8 7 1.7310 -4.2887 2.0838 9 6 2.1859 -5.2161 3.1226 10 6 1.6596 -6.5973 2.8285 11 6 0.4379 -6.9939 3.3413 12 6 -0.0496 -8.2569 3.0689 13 6 0.6937 -9.1333 2.2888 14 8 0.2199 -10.3778 2.0246 15 6 1.0407 -11.2170 1.3613 16 1 2.0470 -10.9090 1.1191 17 6 0.5926 -12.4755 0.9902 18 7 -0.6331 -12.8510 1.2856 19 14 1.7295 -13.6381 0.0706 20 1 3.0453 -12.9820 -0.1376 21 1 1.9159 -14.8791 0.8645 22 1 1.1313 -13.9775 -1.2454 23 6 1.9227 -8.7340 1.7801 24 6 2.4021 -7.4676 2.0514 25 7 2.0197 -0.6925 -1.1993 26 6 3.4881 -0.7056 -1.2370 27 6 1.4671 -0.0879 -2.4189 28 6 0.4626 -0.9143 -3.2244 29 6 1.8803 -0.6981 -3.7597 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.5978 -0.2679 2.1365 34 1 3.1254 -0.6360 1.3003 35 1 1.1102 -2.4572 0.4556 36 1 1.1773 -4.6104 1.3551 37 1 3.2755 -5.2379 3.1385 38 1 1.8149 -4.8853 4.0927 39 1 -0.1372 -6.3138 3.9521 40 1 -1.0057 -8.5646 3.4659 41 1 -0.9464 -13.7316 1.0262 42 1 2.5031 -9.4133 1.1736 43 1 3.3576 -7.1564 1.6557 44 1 3.8693 -1.2334 -0.3629 45 1 3.8238 -1.2117 -2.1421 46 1 3.8607 0.3188 -1.2341 47 1 1.3166 0.9911 -2.3820 48 1 0.2114 -1.9064 -2.8493 49 1 -0.3487 -0.3789 -3.7178 50 1 2.0013 -0.0207 -4.6050 51 1 2.5624 -1.5480 -3.7369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171684109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:50 Heat of formation + Delta-G solvation = -19.395767 kcal Electronic energy + Delta-G solvation = -29636.474504 eV Core-core repulsion = 25536.786661 eV Total energy + Delta-G solvation = -4099.687844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17429 -40.71277 -39.77024 -38.51038 -36.84661 -35.53696 -34.40672 -34.19875 -31.96760 -31.80420 -31.09080 -28.07076 -27.40759 -26.19800 -25.79211 -23.62657 -23.11063 -22.52029 -22.14079 -21.90321 -20.59243 -19.88253 -19.47192 -18.80718 -17.68592 -17.13350 -16.70004 -16.42739 -16.29889 -16.13700 -16.01317 -15.80851 -15.52714 -15.25811 -15.18461 -14.88273 -14.69922 -14.36516 -14.28993 -14.12658 -13.82700 -13.66979 -13.42841 -13.16424 -13.10686 -13.02718 -12.56665 -12.50549 -12.33359 -12.28297 -12.19549 -12.17536 -12.08600 -11.93602 -11.34609 -11.23869 -11.20798 -11.00383 -10.80586 -10.26995 -9.80092 -9.62126 -9.28291 -9.00393 -8.47944 -6.15659 0.54834 0.59332 1.36346 1.43368 1.54160 1.92044 2.17419 2.26413 2.73892 2.83370 2.93382 3.16072 3.48816 3.55937 3.77589 3.91270 3.98626 4.05499 4.07792 4.12468 4.19444 4.28505 4.34841 4.40644 4.49323 4.58843 4.59582 4.68098 4.78884 4.80907 4.82606 4.83441 4.86395 4.96137 5.03667 5.06091 5.07289 5.15062 5.16209 5.28310 5.35696 5.37477 5.51801 5.55999 5.61322 5.70500 5.77800 6.02190 6.05807 6.11087 6.18024 6.18720 6.97153 7.19467 7.68511 7.76607 8.75186 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.001956 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.510381 B =14314.924964 C =15617.161650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.066 0.934 4 C 0.148 3.852 5 N -0.720 5.720 6 C 0.699 3.301 7 O -0.641 6.641 8 N -0.732 5.732 9 C 0.205 3.795 10 C -0.180 4.180 11 C -0.043 4.043 12 C -0.204 4.204 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.412 4.412 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.243 4.243 24 C -0.045 4.045 25 N -0.515 5.515 26 C 0.027 3.973 27 C 0.005 3.995 28 C -0.162 4.162 29 C -0.176 4.176 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.410 0.590 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.032 0.968 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.104 0.896 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 28.286 -8.002 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.084 0.916 4 C 0.023 3.977 5 N -0.376 5.376 6 C 0.399 3.601 7 O -0.524 6.524 8 N -0.387 5.387 9 C 0.082 3.918 10 C -0.181 4.181 11 C -0.061 4.061 12 C -0.223 4.223 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.488 4.488 16 H 0.120 0.880 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.175 1.175 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.262 4.262 24 C -0.064 4.064 25 N -0.240 5.240 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.199 4.199 29 C -0.214 4.214 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.165 0.835 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.114 0.886 48 H 0.109 0.891 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.784 27.906 -7.112 29.193 hybrid contribution 0.084 -0.539 -0.945 1.091 sum 4.868 27.368 -8.058 28.941 Atomic orbital electron populations 1.21817 0.92734 1.02668 1.02591 1.21891 0.96885 0.95802 0.88383 0.91572 1.21238 0.99471 0.79679 0.97273 1.44825 1.56766 1.08453 1.27591 1.16127 0.80094 0.81360 0.82518 1.90879 1.45252 1.78141 1.38130 1.45219 1.56844 1.06498 1.30172 1.19680 0.98372 0.83508 0.90279 1.19495 0.97018 0.96237 1.05357 1.20877 0.94696 0.93668 0.96867 1.20443 1.01834 0.95136 1.04914 1.19993 0.93477 0.85738 0.93648 1.83954 1.42643 1.19257 1.67646 1.21851 0.96035 0.95180 1.35693 0.88001 1.26570 0.98618 0.98607 0.98204 1.70184 1.18200 1.21168 1.46128 0.84537 0.77443 0.76944 0.77358 1.17459 1.19477 1.19326 1.21234 0.97964 0.99122 1.07924 1.20928 0.98982 0.91478 0.94982 1.61770 1.08088 1.53411 1.00710 1.22352 0.86965 1.00239 1.02559 1.22396 1.04472 0.95695 0.87778 1.23100 0.92771 1.01689 1.02372 1.23113 0.98866 1.03347 0.96049 0.91426 0.91469 0.92315 0.91598 0.92689 0.75311 0.75906 0.91677 0.91290 0.83514 0.86624 0.91808 0.86271 0.84498 0.92147 0.91144 0.94973 0.88601 0.89090 0.87825 0.87737 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.89 71.98 0.64 -0.73 16 2 C 0.08 0.88 2.30 44.92 0.10 0.99 16 3 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 4 C 0.15 2.37 4.75 86.38 0.41 2.78 16 5 N -0.72 -13.11 5.14 -478.54 -2.46 -15.57 16 6 C 0.70 17.63 8.57 179.05 1.53 19.16 16 7 O -0.64 -21.43 16.34 -4.00 -0.07 -21.50 16 8 N -0.73 -16.77 5.55 -482.29 -2.68 -19.45 16 9 C 0.21 5.22 5.80 85.63 0.50 5.72 16 10 C -0.18 -5.27 5.25 -19.83 -0.10 -5.38 16 11 C -0.04 -1.34 9.69 22.25 0.22 -1.12 16 12 C -0.20 -8.22 9.99 22.39 0.22 -8.00 16 13 C 0.12 5.85 6.65 22.58 0.15 6.00 16 14 O -0.23 -13.42 9.76 -22.84 -0.22 -13.65 16 15 C -0.41 -23.44 9.46 67.92 0.64 -22.80 16 16 H 0.10 5.33 5.26 -2.92 -0.02 5.31 16 17 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 18 N -0.92 -55.57 13.67 21.61 0.30 -55.27 16 19 Si 1.02 42.15 29.55 68.60 2.03 44.18 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 23 C -0.24 -10.10 9.14 22.39 0.20 -9.90 16 24 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 25 N -0.51 -6.23 4.26 -871.78 -3.71 -9.95 16 26 C 0.03 0.34 9.06 127.69 1.16 1.50 16 27 C 0.01 0.05 3.74 44.91 0.17 0.22 16 28 C -0.16 -1.69 10.42 30.62 0.32 -1.37 16 29 C -0.18 -1.82 9.72 30.62 0.30 -1.53 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 7.01 -2.39 -0.02 0.57 16 32 H 0.06 0.67 7.12 -2.39 -0.02 0.65 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.02 6.74 -2.39 -0.02 1.01 16 35 H 0.41 6.32 7.29 -92.71 -0.68 5.65 16 36 H 0.41 8.12 8.48 -92.71 -0.79 7.33 16 37 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 38 H 0.07 1.76 8.08 -2.39 -0.02 1.75 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.12 5.09 5.69 -2.92 -0.02 5.07 16 43 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.06 0.96 6.48 -2.39 -0.02 0.94 16 45 H 0.07 0.90 6.74 -2.39 -0.02 0.88 16 46 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 47 H 0.10 0.88 8.03 -2.38 -0.02 0.86 16 48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.09 1.10 7.25 -2.39 -0.02 1.09 16 Total: -1.00 -71.95 415.96 -0.18 -72.13 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.51 Total: 35.56 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 7.14 Total: -16.48 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -8.56 Total: -100.24 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.29 Total: -35.14 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -71.95 -0.18 -72.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171684109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.733 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds