Wall clock time and date at job start Wed Apr 1 2020 04:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 C 1.53000 * 109.47349 * 240.00315 * 2 1 3 5 5 N 1.46503 * 109.47004 * 294.63541 * 4 2 1 6 6 C 1.34776 * 120.00152 * 175.00061 * 5 4 2 7 7 O 1.21589 * 119.99709 * 359.72534 * 6 5 4 8 8 N 1.34771 * 120.00059 * 179.72729 * 6 5 4 9 9 C 1.46497 * 120.00114 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47347 * 180.02562 * 9 8 6 11 11 C 1.38312 * 119.92568 * 269.72659 * 10 9 8 12 12 C 1.38103 * 120.06295 * 179.72442 * 11 10 9 13 13 C 1.38877 * 119.93151 * 0.57213 * 12 11 10 14 14 O 1.35754 * 120.06695 * 179.68363 * 13 12 11 15 15 C 1.34826 * 117.00055 * 185.88145 * 14 13 12 16 16 H 1.08003 * 119.99892 * 3.83830 * 15 14 13 17 17 C 1.38651 * 120.00269 * 183.82800 * 15 14 13 18 18 N 1.31559 * 120.00022 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00262 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47298 * 90.00386 * 19 17 15 21 21 H 1.48501 * 109.47441 * 210.00465 * 19 17 15 22 22 H 1.48506 * 109.47226 * 330.00411 * 19 17 15 23 23 C 1.38877 * 119.86627 * 359.69749 * 13 12 11 24 24 C 1.38106 * 119.92616 * 0.02562 * 23 13 12 25 25 N 1.46898 * 109.47103 * 119.99832 * 2 1 3 26 26 C 1.46903 * 111.00020 * 171.45663 * 25 2 1 27 27 C 1.46895 * 111.00118 * 295.41290 * 25 2 1 28 28 C 1.53003 * 117.49739 * 243.74555 * 27 25 2 29 29 C 1.53003 * 117.49713 * 175.08464 * 27 25 2 30 30 H 1.09004 * 109.47441 * 59.99909 * 1 2 3 31 31 H 1.09006 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47674 * 300.00161 * 1 2 3 33 33 H 1.08996 * 109.47277 * 174.63930 * 4 2 1 34 34 H 1.09001 * 109.47309 * 54.63383 * 4 2 1 35 35 H 0.97007 * 119.99760 * 354.72982 * 5 4 2 36 36 H 0.97002 * 120.00414 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46809 * 299.99539 * 9 8 6 38 38 H 1.09001 * 109.47438 * 59.99322 * 9 8 6 39 39 H 1.07996 * 119.96654 * 359.97436 * 11 10 9 40 40 H 1.08001 * 120.03125 * 180.26578 * 12 11 10 41 41 H 0.97000 * 120.00384 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03926 * 179.97438 * 23 13 12 43 43 H 1.08003 * 119.96094 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47207 * 59.60917 * 26 25 2 45 45 H 1.08992 * 109.47164 * 179.61292 * 26 25 2 46 46 H 1.09007 * 109.46955 * 299.61283 * 26 25 2 47 47 H 1.08994 * 115.55170 * 29.41499 * 27 25 2 48 48 H 1.08997 * 117.49860 * 359.97438 * 28 27 25 49 49 H 1.08998 * 117.49619 * 145.02113 * 28 27 25 50 50 H 1.08994 * 117.49814 * 214.97550 * 29 27 25 51 51 H 1.08994 * 117.49823 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6600 -2.1347 -1.1865 6 6 1.9158 -2.9483 -2.2301 7 8 2.4574 -2.5080 -3.2257 8 7 1.5711 -4.2498 -2.1702 9 6 1.8496 -5.1343 -3.3043 10 6 1.3691 -6.5265 -2.9855 11 6 2.2226 -7.4285 -2.3765 12 6 1.7834 -8.7034 -2.0779 13 6 0.4870 -9.0830 -2.4004 14 8 0.0545 -10.3375 -2.1140 15 6 -1.1703 -10.6798 -2.5618 16 1 -1.7337 -9.9907 -3.1734 17 6 -1.7064 -11.9166 -2.2373 18 7 -1.0203 -12.7559 -1.4920 19 14 -3.4030 -12.3912 -2.8584 20 1 -3.2770 -13.0685 -4.1739 21 1 -4.0460 -13.3122 -1.8870 22 1 -4.2349 -11.1701 -3.0080 23 6 -0.3658 -8.1767 -3.0169 24 6 0.0775 -6.9015 -3.3078 25 7 2.0196 -0.6924 1.1994 26 6 3.4738 -0.8910 1.1359 27 6 1.6402 0.0341 2.4185 28 6 2.7682 0.6019 3.2823 29 6 1.9756 -0.6168 3.7620 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1257 -0.6388 -1.2985 34 1 1.6004 -0.2658 -2.1367 35 1 1.2278 -2.4859 -0.3922 36 1 1.1393 -4.6011 -1.3758 37 1 1.3308 -4.7650 -4.1890 38 1 2.9227 -5.1545 -3.4944 39 1 3.2322 -7.1343 -2.1306 40 1 2.4490 -9.4059 -1.5985 41 1 -1.3955 -13.6211 -1.2647 42 1 -1.3743 -8.4691 -3.2694 43 1 -0.5854 -6.1962 -3.7869 44 1 3.9695 0.0765 1.0571 45 1 3.8108 -1.3995 2.0391 46 1 3.7199 -1.4974 0.2642 47 1 0.7168 0.6095 2.3547 48 1 3.7917 0.4360 2.9463 49 1 2.5866 1.5507 3.7871 50 1 1.2730 -0.4691 4.5820 51 1 2.4781 -1.5837 3.7412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171684116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:55 Heat of formation + Delta-G solvation = 6.713124 kcal Electronic energy + Delta-G solvation = -29539.555117 eV Core-core repulsion = 25440.999440 eV Total energy + Delta-G solvation = -4098.555677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.26455 -39.42431 -38.98185 -36.94789 -36.21069 -34.26152 -33.37248 -32.34125 -31.11912 -30.25787 -29.79430 -27.29687 -25.91871 -25.62220 -24.45665 -22.78216 -22.02726 -21.83853 -20.97059 -20.58065 -19.74880 -18.45806 -18.04511 -17.39365 -17.02599 -16.35364 -15.74995 -15.52638 -15.19873 -14.79519 -14.62006 -14.49044 -14.40258 -14.15062 -13.88965 -13.73001 -13.58644 -13.42374 -12.92757 -12.92223 -12.75837 -12.67499 -12.41170 -12.08093 -12.00740 -11.90650 -11.66352 -11.60861 -11.39898 -11.37442 -10.98571 -10.94326 -10.76857 -10.71360 -10.64081 -10.47800 -10.12423 -9.43437 -9.21259 -8.89700 -8.66917 -8.60208 -8.25815 -7.31043 -6.51815 -4.10363 2.06340 2.15474 2.90293 3.09842 3.10174 3.14963 3.18842 3.34028 3.58609 3.91424 4.25307 4.34983 4.43650 4.52279 4.58629 4.64063 4.66218 4.82713 4.88806 5.05157 5.11492 5.16855 5.21573 5.27066 5.33252 5.34873 5.39772 5.45012 5.48575 5.50880 5.60952 5.67064 5.70032 5.72567 5.85552 5.86242 5.97800 6.14854 6.38171 6.41973 6.56388 6.61707 6.65217 6.68483 6.82918 6.95900 7.06958 7.18962 7.30540 7.36895 7.73991 7.92912 8.15874 8.72288 8.93620 9.62170 10.65790 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.001808 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.397245 B =15481.811783 C =16223.911776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.059 0.941 4 C 0.146 3.854 5 N -0.739 5.739 6 C 0.700 3.300 7 O -0.603 6.603 8 N -0.738 5.738 9 C 0.199 3.801 10 C -0.213 4.213 11 C -0.053 4.053 12 C -0.196 4.196 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.237 4.237 24 C -0.050 4.050 25 N -0.504 5.504 26 C 0.014 3.986 27 C 0.019 3.981 28 C -0.221 4.221 29 C -0.169 4.169 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.404 0.596 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.120 0.880 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 25.765 7.039 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 H 0.077 0.923 4 C 0.020 3.980 5 N -0.397 5.397 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.393 5.393 9 C 0.076 3.924 10 C -0.214 4.214 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.256 4.256 24 C -0.069 4.069 25 N -0.226 5.226 26 C -0.134 4.134 27 C -0.090 4.090 28 C -0.260 4.260 29 C -0.207 4.207 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.239 0.761 36 H 0.231 0.769 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.126 0.874 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.138 0.862 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.115 0.885 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.745 25.254 6.304 26.458 hybrid contribution -0.878 0.187 0.534 1.045 sum 3.866 25.442 6.837 26.627 Atomic orbital electron populations 1.21875 0.93399 1.03135 1.01857 1.21967 0.96631 0.96095 0.89286 0.92333 1.21206 0.99651 0.80593 0.96529 1.44990 1.66545 1.09265 1.18862 1.16045 0.79454 0.81261 0.83291 1.90899 1.49419 1.75644 1.32251 1.45478 1.65407 1.07433 1.20958 1.19800 0.99828 0.85476 0.87327 1.19233 0.95811 0.95238 1.11137 1.20539 0.98078 0.92395 0.96224 1.20208 0.94641 0.97332 1.09331 1.19440 0.92628 0.85559 0.91818 1.83984 1.33825 1.23500 1.66349 1.21346 0.91910 1.01824 1.31761 0.88952 1.25313 0.99840 0.94984 0.96384 1.70036 1.37425 1.08029 1.33924 0.85696 0.80090 0.78964 0.78601 1.19805 1.20212 1.19150 1.21164 1.01354 0.94471 1.08647 1.20650 0.94352 0.95182 0.96725 1.61885 1.13374 1.46844 1.00540 1.22587 0.86983 1.00430 1.03357 1.22710 0.98755 0.99965 0.87604 1.23573 0.98107 0.98409 1.05879 1.23065 1.03302 0.97343 0.96963 0.91786 0.91396 0.92377 0.91977 0.90884 0.76061 0.76881 0.91883 0.91853 0.86970 0.86419 0.91904 0.85454 0.87399 0.95023 0.91155 0.90339 0.86192 0.88254 0.88956 0.88492 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.04 37.16 0.34 -0.55 16 2 C 0.07 0.45 2.34 -67.72 -0.16 0.29 16 3 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 4 C 0.15 1.26 4.52 -4.04 -0.02 1.24 16 5 N -0.74 -7.35 4.82 -65.23 -0.31 -7.67 16 6 C 0.70 9.50 8.57 -86.92 -0.74 8.75 16 7 O -0.60 -10.52 16.34 5.29 0.09 -10.43 16 8 N -0.74 -9.49 5.55 -66.42 -0.37 -9.86 16 9 C 0.20 2.86 5.80 -5.20 -0.03 2.83 16 10 C -0.21 -3.44 5.25 -104.57 -0.55 -3.98 16 11 C -0.05 -0.91 9.69 -39.60 -0.38 -1.29 16 12 C -0.20 -3.96 9.99 -39.39 -0.39 -4.35 16 13 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 14 O -0.17 -4.83 9.76 0.05 0.00 -4.83 16 15 C -0.39 -10.69 9.46 30.88 0.29 -10.40 16 16 H 0.09 2.32 5.27 -52.48 -0.28 2.05 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 19 Si 0.94 20.08 29.55 -169.99 -5.02 15.06 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.24 -4.93 9.14 -39.39 -0.36 -5.29 16 24 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 25 N -0.50 -3.43 4.19 -226.91 -0.95 -4.39 16 26 C 0.01 0.10 7.58 60.07 0.46 0.55 16 27 C 0.02 0.12 5.81 -67.71 -0.39 -0.28 16 28 C -0.22 -1.27 9.51 -26.69 -0.25 -1.52 16 29 C -0.17 -1.04 9.99 -26.69 -0.27 -1.31 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.48 7.32 -51.93 -0.38 0.10 16 32 H 0.06 0.31 6.34 -51.93 -0.33 -0.02 16 33 H 0.06 0.58 6.66 -51.93 -0.35 0.23 16 34 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 35 H 0.40 3.56 7.44 -40.82 -0.30 3.25 16 36 H 0.40 4.59 8.48 -40.82 -0.35 4.24 16 37 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.13 2.67 5.70 -52.49 -0.30 2.37 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.03 0.20 7.26 -51.93 -0.38 -0.17 16 45 H 0.07 0.48 6.60 -51.93 -0.34 0.14 16 46 H 0.08 0.64 6.14 -51.92 -0.32 0.32 16 47 H 0.12 0.67 6.25 -51.93 -0.32 0.34 16 48 H 0.10 0.59 5.90 -51.93 -0.31 0.28 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.10 0.67 7.56 -51.93 -0.39 0.28 16 LS Contribution 410.00 15.07 6.18 6.18 Total: -1.00 -31.39 410.00 -10.54 -41.93 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.70 Total: 10.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.21 Total: -12.12 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.88 Total: -45.87 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.26 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.39 -10.54 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171684116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.642 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds