Wall clock time and date at job start Wed Apr 1 2020 04:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 C 1.53000 * 109.47349 * 240.00315 * 2 1 3 5 5 N 1.46503 * 109.47004 * 294.63541 * 4 2 1 6 6 C 1.34776 * 120.00152 * 175.00061 * 5 4 2 7 7 O 1.21589 * 119.99709 * 359.72534 * 6 5 4 8 8 N 1.34771 * 120.00059 * 179.72729 * 6 5 4 9 9 C 1.46497 * 120.00114 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47347 * 180.02562 * 9 8 6 11 11 C 1.38312 * 119.92568 * 269.72659 * 10 9 8 12 12 C 1.38103 * 120.06295 * 179.72442 * 11 10 9 13 13 C 1.38877 * 119.93151 * 0.57213 * 12 11 10 14 14 O 1.35754 * 120.06695 * 179.68363 * 13 12 11 15 15 C 1.34826 * 117.00055 * 185.88145 * 14 13 12 16 16 H 1.08003 * 119.99892 * 3.83830 * 15 14 13 17 17 C 1.38651 * 120.00269 * 183.82800 * 15 14 13 18 18 N 1.31559 * 120.00022 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00262 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47298 * 90.00386 * 19 17 15 21 21 H 1.48501 * 109.47441 * 210.00465 * 19 17 15 22 22 H 1.48506 * 109.47226 * 330.00411 * 19 17 15 23 23 C 1.38877 * 119.86627 * 359.69749 * 13 12 11 24 24 C 1.38106 * 119.92616 * 0.02562 * 23 13 12 25 25 N 1.46898 * 109.47103 * 119.99832 * 2 1 3 26 26 C 1.46903 * 111.00020 * 171.45663 * 25 2 1 27 27 C 1.46895 * 111.00118 * 295.41290 * 25 2 1 28 28 C 1.53003 * 117.49739 * 243.74555 * 27 25 2 29 29 C 1.53003 * 117.49713 * 175.08464 * 27 25 2 30 30 H 1.09004 * 109.47441 * 59.99909 * 1 2 3 31 31 H 1.09006 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47674 * 300.00161 * 1 2 3 33 33 H 1.08996 * 109.47277 * 174.63930 * 4 2 1 34 34 H 1.09001 * 109.47309 * 54.63383 * 4 2 1 35 35 H 0.97007 * 119.99760 * 354.72982 * 5 4 2 36 36 H 0.97002 * 120.00414 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.46809 * 299.99539 * 9 8 6 38 38 H 1.09001 * 109.47438 * 59.99322 * 9 8 6 39 39 H 1.07996 * 119.96654 * 359.97436 * 11 10 9 40 40 H 1.08001 * 120.03125 * 180.26578 * 12 11 10 41 41 H 0.97000 * 120.00384 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03926 * 179.97438 * 23 13 12 43 43 H 1.08003 * 119.96094 * 180.02562 * 24 23 13 44 44 H 1.09000 * 109.47207 * 59.60917 * 26 25 2 45 45 H 1.08992 * 109.47164 * 179.61292 * 26 25 2 46 46 H 1.09007 * 109.46955 * 299.61283 * 26 25 2 47 47 H 1.08994 * 115.55170 * 29.41499 * 27 25 2 48 48 H 1.08997 * 117.49860 * 359.97438 * 28 27 25 49 49 H 1.08998 * 117.49619 * 145.02113 * 28 27 25 50 50 H 1.08994 * 117.49814 * 214.97550 * 29 27 25 51 51 H 1.08994 * 117.49823 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6600 -2.1347 -1.1865 6 6 1.9158 -2.9483 -2.2301 7 8 2.4574 -2.5080 -3.2257 8 7 1.5711 -4.2498 -2.1702 9 6 1.8496 -5.1343 -3.3043 10 6 1.3691 -6.5265 -2.9855 11 6 2.2226 -7.4285 -2.3765 12 6 1.7834 -8.7034 -2.0779 13 6 0.4870 -9.0830 -2.4004 14 8 0.0545 -10.3375 -2.1140 15 6 -1.1703 -10.6798 -2.5618 16 1 -1.7337 -9.9907 -3.1734 17 6 -1.7064 -11.9166 -2.2373 18 7 -1.0203 -12.7559 -1.4920 19 14 -3.4030 -12.3912 -2.8584 20 1 -3.2770 -13.0685 -4.1739 21 1 -4.0460 -13.3122 -1.8870 22 1 -4.2349 -11.1701 -3.0080 23 6 -0.3658 -8.1767 -3.0169 24 6 0.0775 -6.9015 -3.3078 25 7 2.0196 -0.6924 1.1994 26 6 3.4738 -0.8910 1.1359 27 6 1.6402 0.0341 2.4185 28 6 2.7682 0.6019 3.2823 29 6 1.9756 -0.6168 3.7620 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 3.1257 -0.6388 -1.2985 34 1 1.6004 -0.2658 -2.1367 35 1 1.2278 -2.4859 -0.3922 36 1 1.1393 -4.6011 -1.3758 37 1 1.3308 -4.7650 -4.1890 38 1 2.9227 -5.1545 -3.4944 39 1 3.2322 -7.1343 -2.1306 40 1 2.4490 -9.4059 -1.5985 41 1 -1.3955 -13.6211 -1.2647 42 1 -1.3743 -8.4691 -3.2694 43 1 -0.5854 -6.1962 -3.7869 44 1 3.9695 0.0765 1.0571 45 1 3.8108 -1.3995 2.0391 46 1 3.7199 -1.4974 0.2642 47 1 0.7168 0.6095 2.3547 48 1 3.7917 0.4360 2.9463 49 1 2.5866 1.5507 3.7871 50 1 1.2730 -0.4691 4.5820 51 1 2.4781 -1.5837 3.7412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171684116.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:54 Heat of formation + Delta-G solvation = -14.129791 kcal Electronic energy + Delta-G solvation = -29540.458933 eV Core-core repulsion = 25440.999440 eV Total energy + Delta-G solvation = -4099.459494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.21716 -40.74453 -40.00916 -38.52161 -36.95080 -35.54129 -34.32615 -34.09802 -31.84554 -31.74077 -31.12001 -28.18976 -27.46083 -26.40849 -25.79246 -23.62594 -23.24017 -22.50714 -22.12874 -21.88774 -20.31436 -19.88227 -19.47063 -18.80084 -17.97111 -17.28577 -16.70753 -16.38534 -16.37707 -16.22242 -16.01316 -15.62608 -15.47919 -15.23550 -15.11519 -15.01133 -14.76317 -14.43311 -14.34668 -14.13874 -13.68631 -13.51812 -13.41324 -13.21630 -13.01494 -12.96120 -12.56567 -12.53705 -12.42985 -12.34107 -12.20421 -12.11220 -12.09665 -11.95282 -11.51815 -11.31698 -11.21190 -11.17416 -10.79468 -10.28211 -9.80037 -9.63834 -9.11895 -9.00348 -8.47541 -6.15383 0.54897 0.59394 1.36410 1.44572 1.53394 1.90675 2.17776 2.25177 2.65130 2.82698 3.09124 3.16802 3.48957 3.55822 3.69505 3.90951 3.94205 4.02712 4.05697 4.11452 4.14293 4.19576 4.29957 4.36767 4.49416 4.56776 4.58948 4.65826 4.76061 4.79139 4.81142 4.83663 4.86259 4.92695 4.99279 5.06075 5.09708 5.14947 5.15887 5.26741 5.28424 5.37597 5.51521 5.55528 5.59924 5.70611 5.77779 6.02204 6.03417 6.09910 6.13195 6.18417 6.97320 7.18530 7.67461 7.76820 8.75321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.001808 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.397245 B =15481.811783 C =16223.911776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.069 0.931 4 C 0.146 3.854 5 N -0.723 5.723 6 C 0.699 3.301 7 O -0.640 6.640 8 N -0.732 5.732 9 C 0.205 3.795 10 C -0.180 4.180 11 C -0.043 4.043 12 C -0.205 4.205 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.412 4.412 16 H 0.103 0.897 17 C -0.023 4.023 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.243 4.243 24 C -0.045 4.045 25 N -0.510 5.510 26 C 0.018 3.982 27 C 0.015 3.985 28 C -0.216 4.216 29 C -0.174 4.174 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.139 0.861 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.130 0.870 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.104 0.896 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 28.944 6.862 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 H 0.087 0.913 4 C 0.021 3.979 5 N -0.380 5.380 6 C 0.399 3.601 7 O -0.523 6.523 8 N -0.387 5.387 9 C 0.081 3.919 10 C -0.181 4.181 11 C -0.061 4.061 12 C -0.224 4.224 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.488 4.488 16 H 0.120 0.880 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.263 4.263 24 C -0.063 4.063 25 N -0.233 5.233 26 C -0.129 4.129 27 C -0.094 4.094 28 C -0.255 4.255 29 C -0.212 4.212 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.147 0.853 48 H 0.115 0.885 49 H 0.119 0.881 50 H 0.122 0.878 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.304 28.501 6.153 29.474 hybrid contribution -0.511 -0.433 0.580 0.886 sum 3.793 28.068 6.733 29.112 Atomic orbital electron populations 1.21854 0.92811 1.02723 1.02594 1.21889 0.96929 0.96118 0.88158 0.91296 1.21282 0.99365 0.79769 0.97505 1.44887 1.65485 1.09484 1.18094 1.16123 0.79150 0.81403 0.83401 1.90882 1.51202 1.76300 1.33910 1.45228 1.65450 1.07208 1.20839 1.19683 1.00124 0.84134 0.87910 1.19496 0.94849 0.95953 1.07822 1.20876 0.99647 0.90808 0.94801 1.20441 0.93697 0.98792 1.09450 1.19988 0.94235 0.85210 0.93417 1.83951 1.34575 1.26007 1.69001 1.21813 0.92198 1.02545 1.32254 0.87968 1.26578 1.04272 0.94658 0.96534 1.70179 1.39909 1.08825 1.36753 0.84595 0.74588 0.79021 0.78092 1.18952 1.19671 1.17541 1.21245 1.00903 0.95498 1.08617 1.20939 0.95304 0.94152 0.95949 1.61875 1.13225 1.47285 1.00907 1.22513 0.87252 1.00471 1.02692 1.22790 0.99317 1.00095 0.87185 1.23587 0.97818 0.98571 1.05501 1.23087 1.03656 0.97139 0.97319 0.91428 0.92326 0.91325 0.92552 0.91465 0.75132 0.75874 0.91542 0.91348 0.83594 0.86684 0.91820 0.86214 0.84363 0.94495 0.91214 0.91599 0.85264 0.88504 0.88093 0.87759 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.04 71.98 0.65 -0.73 16 2 C 0.08 0.84 2.34 44.91 0.11 0.94 16 3 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 4 C 0.15 2.26 4.52 86.38 0.39 2.65 16 5 N -0.72 -12.85 4.82 -478.53 -2.31 -15.16 16 6 C 0.70 17.33 8.57 179.06 1.53 18.86 16 7 O -0.64 -21.10 16.34 -3.99 -0.07 -21.17 16 8 N -0.73 -16.54 5.55 -482.31 -2.68 -19.22 16 9 C 0.21 5.16 5.80 85.63 0.50 5.66 16 10 C -0.18 -5.25 5.25 -19.83 -0.10 -5.35 16 11 C -0.04 -1.34 9.69 22.26 0.22 -1.13 16 12 C -0.20 -8.26 9.99 22.39 0.22 -8.03 16 13 C 0.12 5.85 6.65 22.58 0.15 6.00 16 14 O -0.23 -13.45 9.76 -22.75 -0.22 -13.67 16 15 C -0.41 -23.45 9.46 67.92 0.64 -22.81 16 16 H 0.10 5.32 5.27 -2.91 -0.02 5.30 16 17 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 18 N -0.92 -55.58 13.67 21.61 0.30 -55.29 16 19 Si 1.02 42.08 29.55 68.60 2.03 44.11 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.24 -10.07 9.14 22.39 0.20 -9.87 16 24 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 25 N -0.51 -5.92 4.19 -871.82 -3.65 -9.58 16 26 C 0.02 0.23 7.58 127.69 0.97 1.19 16 27 C 0.02 0.15 5.81 44.92 0.26 0.42 16 28 C -0.22 -2.05 9.51 30.62 0.29 -1.76 16 29 C -0.17 -1.86 9.99 30.62 0.31 -1.55 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.69 7.32 -2.38 -0.02 0.67 16 32 H 0.07 0.54 6.34 -2.39 -0.02 0.52 16 33 H 0.06 0.97 6.66 -2.39 -0.02 0.95 16 34 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.41 6.26 7.44 -92.70 -0.69 5.57 16 36 H 0.41 8.02 8.48 -92.71 -0.79 7.24 16 37 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 38 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.12 5.08 5.70 -2.91 -0.02 5.06 16 43 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 44 H 0.04 0.41 7.26 -2.39 -0.02 0.39 16 45 H 0.07 0.86 6.60 -2.39 -0.02 0.84 16 46 H 0.07 0.98 6.14 -2.38 -0.01 0.96 16 47 H 0.13 1.09 6.25 -2.39 -0.01 1.07 16 48 H 0.10 0.98 5.90 -2.39 -0.01 0.96 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 51 H 0.09 1.11 7.56 -2.39 -0.02 1.09 16 Total: -1.00 -71.86 410.00 -0.09 -71.95 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.51 Total: 35.56 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 7.02 Total: -17.55 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -8.34 Total: -99.24 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.29 Total: -34.84 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.86 -0.09 -71.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171684116.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.820 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds