Wall clock time and date at job start Wed Apr 1 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46715 * 2 1 4 4 C 1.47443 * 111.00044 * 55.98084 * 3 2 1 5 5 C 1.54316 * 107.23488 * 123.25331 * 4 3 2 6 6 C 1.55144 * 103.01992 * 22.28238 * 5 4 3 7 7 C 1.47851 * 110.99483 * 176.82103 * 3 2 1 8 8 H 1.08996 * 110.37410 * 332.57794 * 7 3 2 9 9 C 1.52998 * 110.37413 * 94.81065 * 7 3 2 10 10 N 1.46497 * 109.46821 * 295.93022 * 9 7 3 11 11 C 1.34779 * 119.99986 * 173.25280 * 10 9 7 12 12 O 1.21586 * 120.00015 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00205 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00011 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46964 * 179.97438 * 14 13 11 16 16 C 1.38298 * 119.93274 * 269.72566 * 15 14 13 17 17 C 1.38105 * 120.06986 * 179.72696 * 16 15 14 18 18 C 1.38876 * 119.92655 * 0.54685 * 17 16 15 19 19 O 1.35752 * 120.06727 * 179.74632 * 18 17 16 20 20 C 1.34824 * 117.00222 * 176.59635 * 19 18 17 21 21 H 1.07996 * 120.00179 * 5.32051 * 20 19 18 22 22 C 1.38654 * 119.99978 * 185.32462 * 20 19 18 23 23 N 1.31556 * 120.00336 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99863 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47537 * 120.00154 * 24 22 20 27 27 H 1.48506 * 109.47279 * 240.00142 * 24 22 20 28 28 C 1.38881 * 119.86570 * 359.73100 * 18 17 16 29 29 C 1.38097 * 119.92664 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.46641 * 181.89422 * 1 2 3 31 31 H 1.08998 * 109.47659 * 301.89794 * 1 2 3 32 32 H 1.09002 * 109.47015 * 61.90171 * 1 2 3 33 33 H 1.09001 * 109.47109 * 240.00155 * 2 1 3 34 34 H 1.09002 * 109.46952 * 120.00045 * 2 1 3 35 35 H 1.09001 * 109.88801 * 242.66177 * 4 3 2 36 36 H 1.09008 * 109.88841 * 3.68742 * 4 3 2 37 37 H 1.08997 * 110.70766 * 140.66671 * 5 4 3 38 38 H 1.09008 * 110.70600 * 263.90178 * 5 4 3 39 39 H 1.08995 * 110.99019 * 206.25385 * 6 5 4 40 40 H 1.09006 * 110.98626 * 82.43683 * 6 5 4 41 41 H 1.08994 * 109.46997 * 175.92925 * 9 7 3 42 42 H 1.09003 * 109.47100 * 55.93008 * 9 7 3 43 43 H 0.97002 * 120.00461 * 353.25795 * 10 9 7 44 44 H 0.96998 * 119.99628 * 0.28108 * 13 11 10 45 45 H 1.09003 * 109.47274 * 300.00111 * 14 13 11 46 46 H 1.09004 * 109.46870 * 59.99923 * 14 13 11 47 47 H 1.08001 * 119.96128 * 0.02562 * 16 15 14 48 48 H 1.07996 * 120.03440 * 180.27238 * 17 16 15 49 49 H 0.96996 * 120.00252 * 180.02562 * 23 22 20 50 50 H 1.07996 * 120.03358 * 180.02562 * 28 18 17 51 51 H 1.08004 * 119.95924 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4696 2.1399 1.1409 5 6 2.6665 2.6909 1.9442 6 6 3.8145 2.6975 0.9006 7 6 3.4956 1.4252 0.0765 8 1 3.8735 0.5377 0.5841 9 6 4.0989 1.5334 -1.3253 10 7 3.7745 0.3273 -2.0909 11 6 4.0858 0.2563 -3.4004 12 8 4.6353 1.1935 -3.9463 13 7 3.7878 -0.8535 -4.1047 14 6 4.1256 -0.9304 -5.5281 15 6 3.6902 -2.2649 -6.0763 16 6 4.5622 -3.3380 -6.0537 17 6 4.1642 -4.5637 -6.5501 18 6 2.8906 -4.7150 -7.0829 19 8 2.4982 -5.9172 -7.5764 20 6 1.2265 -6.0138 -8.0137 21 1 0.5971 -5.1366 -8.0422 22 6 0.7267 -7.2393 -8.4269 23 7 1.4931 -8.3080 -8.3918 24 14 -1.0355 -7.3732 -9.0322 25 1 -1.6823 -6.0378 -8.9721 26 1 -1.0416 -7.8642 -10.4336 27 1 -1.7837 -8.3242 -8.1713 28 6 2.0192 -3.6339 -7.1094 29 6 2.4211 -2.4125 -6.6059 30 1 -0.3632 -1.0271 0.0340 31 1 -0.3634 0.5430 0.8724 32 1 -0.3633 0.4840 -0.9066 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8552 2.9641 0.7786 36 1 0.8712 1.4795 1.7686 37 1 2.4610 3.7013 2.2976 38 1 2.9074 2.0313 2.7780 39 1 4.7857 2.6137 1.3881 40 1 3.7686 3.5893 0.2755 41 1 5.1814 1.6346 -1.2481 42 1 3.6875 2.4068 -1.8315 43 1 3.3357 -0.4202 -1.6556 44 1 3.3457 -1.5995 -3.6701 45 1 3.6149 -0.1319 -6.0664 46 1 5.2030 -0.8210 -5.6522 47 1 5.5539 -3.2186 -5.6429 48 1 4.8441 -5.4025 -6.5282 49 1 1.1435 -9.1653 -8.6812 50 1 1.0280 -3.7486 -7.5227 51 1 1.7437 -1.5715 -6.6259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174660269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:51 Heat of formation + Delta-G solvation = -27.254513 kcal Electronic energy + Delta-G solvation = -29634.583692 eV Core-core repulsion = 25534.555068 eV Total energy + Delta-G solvation = -4100.028624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.29017 -39.46350 -38.98473 -36.89150 -34.83103 -34.24387 -33.85833 -32.36664 -30.71667 -30.25395 -29.45515 -28.96082 -26.16250 -25.45179 -24.40310 -23.12622 -22.03746 -21.24509 -20.71500 -20.62154 -20.45600 -18.36097 -18.05147 -17.19069 -16.99418 -16.37459 -15.83881 -15.52518 -14.87538 -14.71903 -14.69144 -14.48980 -14.37929 -14.19512 -13.83719 -13.68102 -13.57139 -13.52402 -13.35603 -12.88371 -12.77653 -12.68379 -12.30710 -12.02154 -11.92812 -11.69181 -11.66198 -11.57062 -11.53049 -11.38475 -11.22713 -11.11186 -10.96792 -10.76084 -10.65992 -10.47740 -10.09576 -9.41402 -9.20682 -8.91701 -8.73100 -8.66560 -8.26975 -7.31761 -6.53094 -4.11854 2.05377 2.14462 2.89956 3.08599 3.09565 3.15077 3.34071 3.45052 3.90315 4.13920 4.14915 4.34582 4.48912 4.57954 4.67410 4.76084 4.82418 4.85551 5.02529 5.04787 5.11605 5.17239 5.23244 5.28370 5.32562 5.37714 5.43906 5.47678 5.49086 5.57396 5.64317 5.69352 5.75945 5.80191 5.84997 5.88439 5.98579 6.13569 6.37134 6.42414 6.57498 6.60763 6.66620 6.67738 6.81959 6.93122 7.02689 7.17643 7.29859 7.36226 7.72944 7.92006 8.11236 8.71481 8.92519 9.61093 10.64553 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.001895 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.259119 B =14773.108310 C =16156.684293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.044 3.956 3 N -0.522 5.522 4 C 0.039 3.961 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.057 3.943 8 H 0.061 0.939 9 C 0.157 3.843 10 N -0.746 5.746 11 C 0.701 3.299 12 O -0.598 6.598 13 N -0.739 5.739 14 C 0.198 3.802 15 C -0.213 4.213 16 C -0.054 4.054 17 C -0.196 4.196 18 C 0.160 3.840 19 O -0.174 6.174 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.237 4.237 29 C -0.050 4.050 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.391 0.609 44 H 0.396 0.604 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.271 0.729 50 H 0.128 0.872 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 18.085 20.306 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.084 4.084 3 N -0.247 5.247 4 C -0.089 4.089 5 C -0.181 4.181 6 C -0.159 4.159 7 C -0.051 4.051 8 H 0.079 0.921 9 C 0.032 3.968 10 N -0.404 5.404 11 C 0.401 3.599 12 O -0.477 6.477 13 N -0.394 5.394 14 C 0.075 3.925 15 C -0.214 4.214 16 C -0.073 4.073 17 C -0.215 4.215 18 C 0.106 3.894 19 O -0.077 6.077 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.767 3.233 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.257 4.257 29 C -0.069 4.069 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.227 0.773 44 H 0.229 0.771 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.130 0.870 48 H 0.136 0.864 49 H 0.081 0.919 50 H 0.146 0.854 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.309 18.693 19.209 26.835 hybrid contribution -1.160 -1.290 0.823 1.920 sum 0.150 17.402 20.032 26.535 Atomic orbital electron populations 1.21889 0.94444 1.02074 1.02710 1.22357 0.96530 0.89087 1.00408 1.63591 1.05860 1.12945 1.42291 1.22882 0.96926 0.98166 0.90894 1.22787 0.95391 1.01934 0.97951 1.22663 0.98686 0.97570 0.96939 1.22882 0.88192 0.98542 0.95503 0.92104 1.21129 0.98662 0.87821 0.89217 1.45247 1.66333 1.19894 1.08939 1.16016 0.79454 0.83271 0.81135 1.90900 1.48915 1.37923 1.69951 1.45489 1.65115 1.17450 1.11345 1.19811 0.99653 0.94534 0.78457 1.19236 0.96228 0.95059 1.10904 1.20541 0.97978 0.91636 0.97117 1.20210 0.95669 0.98147 1.07516 1.19444 0.92948 0.86470 0.90581 1.83981 1.30421 1.26418 1.66841 1.21403 0.86084 0.96199 1.43188 0.88859 1.25322 1.00124 0.94145 0.96927 1.70044 1.36140 0.99621 1.43588 0.85631 0.80218 0.78919 0.78580 1.19031 1.20067 1.20091 1.21163 1.01721 0.93310 1.09482 1.20656 0.94549 0.96228 0.95450 0.91946 0.92473 0.91595 0.90776 0.94773 0.90390 0.92238 0.90495 0.91508 0.90406 0.89962 0.91762 0.90609 0.77304 0.77087 0.91821 0.91788 0.86960 0.86416 0.91948 0.85427 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.74 37.16 0.36 -0.70 16 2 C 0.04 0.32 5.25 -3.82 -0.02 0.30 16 3 N -0.52 -3.99 4.88 -223.37 -1.09 -5.08 16 4 C 0.04 0.24 6.12 -2.84 -0.02 0.23 16 5 C -0.14 -0.72 6.94 -24.91 -0.17 -0.89 16 6 C -0.12 -0.68 6.50 -24.59 -0.16 -0.84 16 7 C 0.06 0.41 2.65 -66.18 -0.18 0.23 16 8 H 0.06 0.41 7.72 -51.93 -0.40 0.01 16 9 C 0.16 1.49 5.38 -4.04 -0.02 1.46 16 10 N -0.75 -7.89 5.33 -65.23 -0.35 -8.24 16 11 C 0.70 9.92 8.57 -86.91 -0.74 9.17 16 12 O -0.60 -10.79 16.32 5.29 0.09 -10.70 16 13 N -0.74 -9.70 5.55 -66.41 -0.37 -10.06 16 14 C 0.20 2.89 5.80 -5.20 -0.03 2.86 16 15 C -0.21 -3.45 5.25 -104.58 -0.55 -4.00 16 16 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 17 C -0.20 -3.95 9.99 -39.39 -0.39 -4.35 16 18 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 19 O -0.17 -4.83 9.76 0.06 0.00 -4.82 16 20 C -0.39 -10.67 9.48 30.89 0.29 -10.38 16 21 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 24 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 28 C -0.24 -4.93 9.17 -39.40 -0.36 -5.30 16 29 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 6.20 -51.93 -0.32 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 5.47 -51.93 -0.28 0.27 16 34 H 0.03 0.23 8.01 -51.93 -0.42 -0.19 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.34 6.07 -51.92 -0.32 0.03 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 43 H 0.39 3.38 5.71 -40.82 -0.23 3.14 16 44 H 0.40 4.57 8.48 -40.82 -0.35 4.23 16 45 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 46 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 47 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 48 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 49 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 50 H 0.13 2.68 5.62 -52.49 -0.30 2.38 16 51 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -32.08 409.04 -10.86 -42.94 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.93 Total: 9.00 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.11 Total: -10.32 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.05 Total: -47.28 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.08 -10.86 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174660269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.690 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds