Wall clock time and date at job start Wed Apr 1 2020 06:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46715 * 2 1 4 4 C 1.47443 * 111.00044 * 55.98084 * 3 2 1 5 5 C 1.54316 * 107.23488 * 123.25331 * 4 3 2 6 6 C 1.55144 * 103.01992 * 22.28238 * 5 4 3 7 7 C 1.47851 * 110.99483 * 176.82103 * 3 2 1 8 8 H 1.08996 * 110.37410 * 332.57794 * 7 3 2 9 9 C 1.52998 * 110.37413 * 94.81065 * 7 3 2 10 10 N 1.46497 * 109.46821 * 295.93022 * 9 7 3 11 11 C 1.34779 * 119.99986 * 173.25280 * 10 9 7 12 12 O 1.21586 * 120.00015 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00205 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00011 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46964 * 179.97438 * 14 13 11 16 16 C 1.38298 * 119.93274 * 269.72566 * 15 14 13 17 17 C 1.38105 * 120.06986 * 179.72696 * 16 15 14 18 18 C 1.38876 * 119.92655 * 0.54685 * 17 16 15 19 19 O 1.35752 * 120.06727 * 179.74632 * 18 17 16 20 20 C 1.34824 * 117.00222 * 176.59635 * 19 18 17 21 21 H 1.07996 * 120.00179 * 5.32051 * 20 19 18 22 22 C 1.38654 * 119.99978 * 185.32462 * 20 19 18 23 23 N 1.31556 * 120.00336 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99863 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47537 * 120.00154 * 24 22 20 27 27 H 1.48506 * 109.47279 * 240.00142 * 24 22 20 28 28 C 1.38881 * 119.86570 * 359.73100 * 18 17 16 29 29 C 1.38097 * 119.92664 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.46641 * 181.89422 * 1 2 3 31 31 H 1.08998 * 109.47659 * 301.89794 * 1 2 3 32 32 H 1.09002 * 109.47015 * 61.90171 * 1 2 3 33 33 H 1.09001 * 109.47109 * 240.00155 * 2 1 3 34 34 H 1.09002 * 109.46952 * 120.00045 * 2 1 3 35 35 H 1.09001 * 109.88801 * 242.66177 * 4 3 2 36 36 H 1.09008 * 109.88841 * 3.68742 * 4 3 2 37 37 H 1.08997 * 110.70766 * 140.66671 * 5 4 3 38 38 H 1.09008 * 110.70600 * 263.90178 * 5 4 3 39 39 H 1.08995 * 110.99019 * 206.25385 * 6 5 4 40 40 H 1.09006 * 110.98626 * 82.43683 * 6 5 4 41 41 H 1.08994 * 109.46997 * 175.92925 * 9 7 3 42 42 H 1.09003 * 109.47100 * 55.93008 * 9 7 3 43 43 H 0.97002 * 120.00461 * 353.25795 * 10 9 7 44 44 H 0.96998 * 119.99628 * 0.28108 * 13 11 10 45 45 H 1.09003 * 109.47274 * 300.00111 * 14 13 11 46 46 H 1.09004 * 109.46870 * 59.99923 * 14 13 11 47 47 H 1.08001 * 119.96128 * 0.02562 * 16 15 14 48 48 H 1.07996 * 120.03440 * 180.27238 * 17 16 15 49 49 H 0.96996 * 120.00252 * 180.02562 * 23 22 20 50 50 H 1.07996 * 120.03358 * 180.02562 * 28 18 17 51 51 H 1.08004 * 119.95924 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4696 2.1399 1.1409 5 6 2.6665 2.6909 1.9442 6 6 3.8145 2.6975 0.9006 7 6 3.4956 1.4252 0.0765 8 1 3.8735 0.5377 0.5841 9 6 4.0989 1.5334 -1.3253 10 7 3.7745 0.3273 -2.0909 11 6 4.0858 0.2563 -3.4004 12 8 4.6353 1.1935 -3.9463 13 7 3.7878 -0.8535 -4.1047 14 6 4.1256 -0.9304 -5.5281 15 6 3.6902 -2.2649 -6.0763 16 6 4.5622 -3.3380 -6.0537 17 6 4.1642 -4.5637 -6.5501 18 6 2.8906 -4.7150 -7.0829 19 8 2.4982 -5.9172 -7.5764 20 6 1.2265 -6.0138 -8.0137 21 1 0.5971 -5.1366 -8.0422 22 6 0.7267 -7.2393 -8.4269 23 7 1.4931 -8.3080 -8.3918 24 14 -1.0355 -7.3732 -9.0322 25 1 -1.6823 -6.0378 -8.9721 26 1 -1.0416 -7.8642 -10.4336 27 1 -1.7837 -8.3242 -8.1713 28 6 2.0192 -3.6339 -7.1094 29 6 2.4211 -2.4125 -6.6059 30 1 -0.3632 -1.0271 0.0340 31 1 -0.3634 0.5430 0.8724 32 1 -0.3633 0.4840 -0.9066 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.8552 2.9641 0.7786 36 1 0.8712 1.4795 1.7686 37 1 2.4610 3.7013 2.2976 38 1 2.9074 2.0313 2.7780 39 1 4.7857 2.6137 1.3881 40 1 3.7686 3.5893 0.2755 41 1 5.1814 1.6346 -1.2481 42 1 3.6875 2.4068 -1.8315 43 1 3.3357 -0.4202 -1.6556 44 1 3.3457 -1.5995 -3.6701 45 1 3.6149 -0.1319 -6.0664 46 1 5.2030 -0.8210 -5.6522 47 1 5.5539 -3.2186 -5.6429 48 1 4.8441 -5.4025 -6.5282 49 1 1.1435 -9.1653 -8.6812 50 1 1.0280 -3.7486 -7.5227 51 1 1.7437 -1.5715 -6.6259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174660269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:50 Heat of formation + Delta-G solvation = -49.397594 kcal Electronic energy + Delta-G solvation = -29635.543888 eV Core-core repulsion = 25534.555068 eV Total energy + Delta-G solvation = -4100.988820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24202 -40.76663 -40.09103 -38.51952 -35.82582 -35.49117 -34.39540 -34.25582 -31.87314 -31.71046 -30.53122 -29.50589 -27.70163 -26.69275 -25.56039 -23.75558 -23.63774 -22.16116 -21.93985 -21.56995 -21.05843 -19.88159 -19.36930 -18.81617 -17.75229 -17.35030 -16.70037 -16.51867 -16.37040 -16.18157 -15.92437 -15.57764 -15.43367 -15.26748 -15.21317 -14.88754 -14.74843 -14.37975 -14.29810 -14.08484 -14.01566 -13.69208 -13.45982 -13.23191 -13.03512 -12.84707 -12.57126 -12.50516 -12.34963 -12.24272 -12.20365 -12.10975 -12.09372 -12.00766 -11.76201 -11.55308 -11.31171 -11.19345 -10.81528 -10.31421 -9.81338 -9.68175 -9.26102 -9.01220 -8.48496 -6.16516 0.53644 0.58372 1.36030 1.42892 1.53824 1.86145 2.16922 2.22351 2.80583 2.90490 3.13496 3.43324 3.48449 3.65243 3.75174 3.89075 4.01856 4.04398 4.12459 4.18199 4.22851 4.28016 4.31945 4.48024 4.56000 4.57644 4.60385 4.66997 4.71570 4.77664 4.81933 4.87120 4.93534 5.01788 5.04604 5.05262 5.11371 5.15203 5.18091 5.27358 5.31504 5.37036 5.49485 5.53971 5.56716 5.69464 5.76822 6.01772 6.02867 6.03726 6.14485 6.16889 6.96547 7.11082 7.62876 7.75887 8.74500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.001895 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.259119 B =14773.108310 C =16156.684293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 N -0.538 5.538 4 C 0.037 3.963 5 C -0.136 4.136 6 C -0.118 4.118 7 C 0.063 3.937 8 H 0.070 0.930 9 C 0.158 3.842 10 N -0.732 5.732 11 C 0.700 3.300 12 O -0.637 6.637 13 N -0.732 5.732 14 C 0.204 3.796 15 C -0.180 4.180 16 C -0.042 4.042 17 C -0.204 4.204 18 C 0.123 3.877 19 O -0.229 6.229 20 C -0.412 4.412 21 H 0.104 0.896 22 C -0.022 4.022 23 N -0.918 5.918 24 Si 1.018 2.982 25 H -0.251 1.251 26 H -0.270 1.270 27 H -0.268 1.268 28 C -0.244 4.244 29 C -0.045 4.045 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.402 0.598 44 H 0.405 0.595 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.147 0.853 48 H 0.116 0.884 49 H 0.273 0.727 50 H 0.120 0.880 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 20.364 22.316 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.084 4.084 3 N -0.264 5.264 4 C -0.090 4.090 5 C -0.174 4.174 6 C -0.157 4.157 7 C -0.045 4.045 8 H 0.088 0.912 9 C 0.033 3.967 10 N -0.389 5.389 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.387 5.387 14 C 0.081 3.919 15 C -0.182 4.182 16 C -0.061 4.061 17 C -0.223 4.223 18 C 0.072 3.928 19 O -0.135 6.135 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.220 4.220 23 N -0.556 5.556 24 Si 0.837 3.163 25 H -0.174 1.174 26 H -0.195 1.195 27 H -0.193 1.193 28 C -0.263 4.263 29 C -0.064 4.064 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.240 0.760 44 H 0.241 0.759 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.165 0.835 48 H 0.134 0.866 49 H 0.082 0.918 50 H 0.138 0.862 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.059 21.009 21.281 29.923 hybrid contribution -0.897 -1.676 0.370 1.936 sum 0.163 19.333 21.650 29.026 Atomic orbital electron populations 1.21860 0.94424 1.02283 1.02266 1.22359 0.96551 0.88979 1.00541 1.63535 1.06173 1.13322 1.43352 1.22897 0.97443 0.97979 0.90693 1.22766 0.94362 1.02605 0.97714 1.22677 0.99686 0.96481 0.96845 1.22823 0.87953 0.99727 0.94042 0.91186 1.21192 0.98856 0.86500 0.90159 1.45181 1.65328 1.20607 1.07830 1.16132 0.79193 0.82769 0.81967 1.90880 1.50769 1.39309 1.70985 1.45234 1.65083 1.17674 1.10742 1.19699 1.00050 0.92964 0.79196 1.19481 0.95187 0.95535 1.07957 1.20878 0.99490 0.90172 0.95540 1.20443 0.94707 0.99637 1.07558 1.19989 0.94618 0.86185 0.92004 1.83950 1.30971 1.28791 1.69770 1.21864 0.86529 0.96958 1.43489 0.87911 1.26579 1.04928 0.93483 0.97008 1.70182 1.38654 1.00382 1.46414 0.84536 0.74215 0.79532 0.77991 1.17431 1.19485 1.19340 1.21235 1.01216 0.93983 1.09851 1.20931 0.95522 0.95664 0.94243 0.91497 0.91790 0.93063 0.91289 0.93859 0.91014 0.91664 0.89585 0.90737 0.89046 0.90579 0.91620 0.92658 0.75954 0.75927 0.91667 0.91175 0.83497 0.86612 0.91807 0.86211 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.74 71.98 0.70 -1.15 16 2 C 0.04 0.54 5.25 86.30 0.45 0.99 16 3 N -0.54 -7.25 4.88 -860.62 -4.20 -11.44 16 4 C 0.04 0.39 6.12 86.65 0.53 0.92 16 5 C -0.14 -1.04 6.94 31.78 0.22 -0.82 16 6 C -0.12 -1.07 6.50 31.98 0.21 -0.87 16 7 C 0.06 0.76 2.65 45.38 0.12 0.88 16 8 H 0.07 0.75 7.72 -2.39 -0.02 0.73 16 9 C 0.16 2.75 5.38 86.38 0.46 3.21 16 10 N -0.73 -13.96 5.33 -478.54 -2.55 -16.51 16 11 C 0.70 18.21 8.57 179.05 1.53 19.74 16 12 O -0.64 -21.93 16.32 -3.99 -0.07 -22.00 16 13 N -0.73 -16.94 5.55 -482.30 -2.68 -19.62 16 14 C 0.20 5.24 5.80 85.63 0.50 5.74 16 15 C -0.18 -5.28 5.25 -19.84 -0.10 -5.38 16 16 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 17 C -0.20 -8.20 9.99 22.39 0.22 -7.97 16 18 C 0.12 5.86 6.65 22.58 0.15 6.01 16 19 O -0.23 -13.38 9.76 -22.70 -0.22 -13.60 16 20 C -0.41 -23.40 9.48 67.92 0.64 -22.75 16 21 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 22 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 23 N -0.92 -55.38 13.67 21.61 0.30 -55.08 16 24 Si 1.02 41.99 29.55 68.60 2.03 44.01 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 28 C -0.24 -10.08 9.17 22.39 0.21 -9.88 16 29 C -0.05 -1.47 9.69 22.25 0.22 -1.25 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.69 6.20 -2.39 -0.01 0.67 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.89 5.47 -2.39 -0.01 0.87 16 34 H 0.04 0.46 8.01 -2.39 -0.02 0.44 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.61 6.07 -2.38 -0.01 0.60 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.80 8.06 -2.38 -0.02 0.78 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.21 8.11 -2.39 -0.02 1.19 16 43 H 0.40 5.96 5.71 -92.71 -0.53 5.43 16 44 H 0.41 8.00 8.48 -92.71 -0.79 7.22 16 45 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 46 H 0.07 1.80 8.08 -2.38 -0.02 1.78 16 47 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 48 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 49 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.12 5.09 5.62 -2.91 -0.02 5.07 16 51 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -73.52 409.04 -1.00 -74.52 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.36 Total: 34.16 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 6.74 Total: -14.44 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -9.13 Total: -102.65 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.29 Total: -35.60 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -73.52 -1.00 -74.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174660269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.125 kcal (2) G-P(sol) polarization free energy of solvation -73.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds