Wall clock time and date at job start Wed Apr 1 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46895 * 109.47312 * 2 1 4 4 C 1.47911 * 110.99903 * 70.76063 * 3 2 1 5 5 C 1.53985 * 107.06051 * 214.15791 * 4 3 2 6 6 C 1.54597 * 105.13960 * 1.22225 * 5 4 3 7 7 C 1.48536 * 111.00198 * 313.36745 * 3 2 1 8 8 H 1.08998 * 110.80902 * 41.21385 * 7 3 2 9 9 C 1.52999 * 110.66588 * 278.14989 * 7 3 2 10 10 N 1.46506 * 109.46897 * 66.81142 * 9 7 3 11 11 C 1.34774 * 119.99930 * 185.69578 * 10 9 7 12 12 O 1.21590 * 120.00013 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00008 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47278 * 180.02562 * 14 13 11 16 16 C 1.38297 * 119.93428 * 269.72909 * 15 14 13 17 17 C 1.38096 * 120.07294 * 179.72581 * 16 15 14 18 18 C 1.38884 * 119.92499 * 0.54163 * 17 16 15 19 19 O 1.35754 * 120.06632 * 179.74530 * 18 17 16 20 20 C 1.34827 * 117.00150 * 184.70147 * 19 18 17 21 21 H 1.07996 * 119.99729 * 354.93922 * 20 19 18 22 22 C 1.38651 * 120.00225 * 174.94668 * 20 19 18 23 23 N 1.31559 * 119.99997 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00080 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47326 * 89.99632 * 24 22 20 26 26 H 1.48506 * 109.47124 * 210.00115 * 24 22 20 27 27 H 1.48501 * 109.47008 * 329.99773 * 24 22 20 28 28 C 1.38869 * 119.86567 * 359.73737 * 18 17 16 29 29 C 1.38106 * 119.93117 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.47155 * 67.65588 * 1 2 3 31 31 H 1.08999 * 109.47203 * 187.65397 * 1 2 3 32 32 H 1.08999 * 109.47186 * 307.65732 * 1 2 3 33 33 H 1.09003 * 109.47004 * 240.00290 * 2 1 3 34 34 H 1.08997 * 109.47182 * 120.00606 * 2 1 3 35 35 H 1.08998 * 109.91178 * 94.80011 * 4 3 2 36 36 H 1.09001 * 109.91430 * 333.51344 * 4 3 2 37 37 H 1.09001 * 110.31291 * 120.13767 * 5 4 3 38 38 H 1.09003 * 110.30741 * 242.21137 * 5 4 3 39 39 H 1.09003 * 110.72268 * 140.31500 * 6 5 4 40 40 H 1.09001 * 110.72589 * 263.59888 * 6 5 4 41 41 H 1.08996 * 109.47105 * 186.81392 * 9 7 3 42 42 H 1.09004 * 109.47133 * 306.81724 * 9 7 3 43 43 H 0.96997 * 119.99902 * 5.70763 * 10 9 7 44 44 H 0.96997 * 119.99823 * 0.02562 * 13 11 10 45 45 H 1.09002 * 109.47075 * 300.00482 * 14 13 11 46 46 H 1.09002 * 109.46677 * 60.00328 * 14 13 11 47 47 H 1.08008 * 119.96223 * 359.97438 * 16 15 14 48 48 H 1.07996 * 120.03898 * 180.27845 * 17 16 15 49 49 H 0.96995 * 119.99832 * 179.97438 * 23 22 20 50 50 H 1.07999 * 120.03623 * 179.97438 * 28 18 17 51 51 H 1.07996 * 119.96523 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7674 2.0363 1.3038 5 6 1.4693 3.5197 1.0175 6 6 1.5377 3.6556 -0.5210 7 6 1.2994 2.2043 -1.0081 8 1 0.2351 1.9688 -1.0096 9 6 1.8986 1.9967 -2.4005 10 7 1.6458 0.6225 -2.8409 11 6 2.1827 0.1746 -3.9932 12 8 2.8772 0.9110 -4.6669 13 7 1.9507 -1.0898 -4.3981 14 6 2.5347 -1.5767 -5.6503 15 6 2.1249 -3.0099 -5.8717 16 6 2.9115 -4.0362 -5.3812 17 6 2.5358 -5.3505 -5.5775 18 6 1.3725 -5.6412 -6.2783 19 8 1.0031 -6.9323 -6.4775 20 6 -0.0825 -7.1466 -7.2478 21 1 -0.6631 -6.3099 -7.6072 22 6 -0.4535 -8.4410 -7.5785 23 7 0.2541 -9.4601 -7.1410 24 14 -1.9571 -8.7377 -8.6463 25 1 -1.5541 -8.7532 -10.0754 26 1 -2.5675 -10.0438 -8.2898 27 1 -2.9453 -7.6520 -8.4224 28 6 0.5878 -4.6086 -6.7747 29 6 0.9658 -3.2962 -6.5698 30 1 -0.3633 0.3907 -0.9505 31 1 -0.3633 -1.0185 0.1369 32 1 -0.3633 0.6278 0.8136 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.6493 1.9505 1.9385 36 1 0.9096 1.5724 1.7907 37 1 0.4740 3.7818 1.3765 38 1 2.2201 4.1542 1.4885 39 1 0.7526 4.3184 -0.8849 40 1 2.5196 4.0111 -0.8336 41 1 1.4387 2.6933 -3.1014 42 1 2.9734 2.1746 -2.3637 43 1 1.0920 0.0350 -2.3034 44 1 1.3970 -1.6773 -3.8605 45 1 2.1786 -0.9651 -6.4793 46 1 3.6214 -1.5139 -5.5929 47 1 3.8185 -3.8095 -4.8404 48 1 3.1480 -6.1514 -5.1903 49 1 -0.0056 -10.3656 -7.3720 50 1 -0.3171 -4.8315 -7.3204 51 1 0.3558 -2.4927 -6.9553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174660284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:55 Heat of formation + Delta-G solvation = -21.817673 kcal Electronic energy + Delta-G solvation = -29806.029738 eV Core-core repulsion = 25706.236873 eV Total energy + Delta-G solvation = -4099.792865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48825 -39.51731 -38.99799 -36.89993 -34.81372 -34.30407 -33.82254 -32.37332 -30.71195 -30.26271 -29.41441 -29.06087 -26.10713 -25.36911 -24.39342 -23.46936 -22.04741 -21.61401 -20.72141 -20.62015 -20.15118 -18.28891 -18.05208 -17.24718 -17.01625 -16.27932 -15.75150 -15.54898 -14.98276 -14.74373 -14.60690 -14.51561 -14.44107 -14.42830 -14.01037 -13.84187 -13.64017 -13.43032 -13.05879 -12.96829 -12.78056 -12.57127 -12.36708 -12.04925 -12.03427 -11.85259 -11.70868 -11.65034 -11.53835 -11.39052 -11.23320 -10.96075 -10.87572 -10.77544 -10.68769 -10.49128 -10.12625 -9.42896 -9.23055 -8.91618 -8.78904 -8.69823 -8.27985 -7.32752 -6.53369 -4.12250 2.03944 2.13461 2.87599 3.08248 3.09548 3.13581 3.30630 3.50809 3.89906 4.12112 4.20308 4.34989 4.47728 4.56794 4.59322 4.72746 4.78956 4.80416 4.96619 5.01255 5.07104 5.16828 5.21344 5.26211 5.31374 5.34869 5.42968 5.46428 5.50568 5.51003 5.62031 5.68019 5.68865 5.78373 5.82997 5.84044 5.97542 6.12580 6.36109 6.40405 6.47882 6.59428 6.62478 6.64081 6.80859 6.90555 7.00189 7.16423 7.28572 7.35335 7.71944 7.91439 8.07346 8.67837 8.92039 9.60386 10.64182 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.001785 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.605842 B =15681.300658 C =16282.351587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 N -0.507 5.507 4 C 0.031 3.969 5 C -0.130 4.130 6 C -0.115 4.115 7 C 0.041 3.959 8 H 0.070 0.930 9 C 0.155 3.845 10 N -0.751 5.751 11 C 0.700 3.300 12 O -0.596 6.596 13 N -0.739 5.739 14 C 0.198 3.802 15 C -0.213 4.213 16 C -0.053 4.053 17 C -0.196 4.196 18 C 0.160 3.840 19 O -0.174 6.174 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.238 4.238 29 C -0.050 4.050 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.393 0.607 44 H 0.395 0.605 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.271 0.729 50 H 0.128 0.872 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 22.305 15.418 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.098 4.098 3 N -0.231 5.231 4 C -0.097 4.097 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.068 4.068 8 H 0.088 0.912 9 C 0.030 3.970 10 N -0.410 5.410 11 C 0.400 3.600 12 O -0.475 6.475 13 N -0.394 5.394 14 C 0.075 3.925 15 C -0.215 4.215 16 C -0.072 4.072 17 C -0.215 4.215 18 C 0.106 3.894 19 O -0.076 6.076 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.257 4.257 29 C -0.069 4.069 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.230 0.770 44 H 0.229 0.771 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.081 0.919 50 H 0.146 0.854 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.637 22.460 14.719 26.860 hybrid contribution -2.260 -0.851 0.181 2.422 sum -1.623 21.608 14.900 26.297 Atomic orbital electron populations 1.22537 0.97928 1.03126 1.02168 1.22461 0.93033 0.90712 1.03568 1.64956 1.52912 1.01542 1.03674 1.22897 1.00734 0.93912 0.92132 1.22378 1.01927 0.96262 0.96269 1.22439 1.03016 0.94856 0.95055 1.23213 0.97344 0.93941 0.92252 0.91207 1.21104 1.01655 0.81971 0.92241 1.45403 1.56263 1.15156 1.24143 1.16031 0.80406 0.82362 0.81184 1.90906 1.43465 1.56588 1.56523 1.45501 1.55817 1.11729 1.26348 1.19817 0.97349 0.90937 0.84379 1.19232 0.99517 0.93355 1.09365 1.20545 0.97912 0.91540 0.97237 1.20214 0.97743 0.96389 1.07148 1.19441 0.92218 0.85382 0.92397 1.83980 1.43735 1.19617 1.60298 1.21350 1.02993 0.93749 1.28842 0.88931 1.25317 0.99253 0.94277 0.97639 1.70036 1.38116 0.99017 1.42198 0.85696 0.79762 0.78419 0.79478 1.19783 1.20201 1.19162 1.21158 1.03370 0.92330 1.08853 1.20652 0.94779 0.95590 0.95897 0.92089 0.91299 0.92153 0.89795 0.90343 0.90240 0.93354 0.91522 0.90779 0.90668 0.90135 0.91573 0.90477 0.77046 0.77113 0.91808 0.91716 0.86918 0.86392 0.91890 0.85447 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 8.46 37.16 0.31 -0.87 16 2 C 0.03 0.22 5.45 -3.83 -0.02 0.20 16 3 N -0.51 -3.86 5.23 -222.63 -1.16 -5.02 16 4 C 0.03 0.19 6.42 -2.75 -0.02 0.17 16 5 C -0.13 -0.67 6.93 -25.38 -0.18 -0.84 16 6 C -0.12 -0.67 6.50 -24.87 -0.16 -0.83 16 7 C 0.04 0.29 2.29 -65.79 -0.15 0.14 16 8 H 0.07 0.47 5.42 -51.93 -0.28 0.19 16 9 C 0.16 1.47 5.39 -4.04 -0.02 1.45 16 10 N -0.75 -7.81 4.71 -65.22 -0.31 -8.12 16 11 C 0.70 9.77 8.57 -86.92 -0.74 9.03 16 12 O -0.60 -10.65 16.33 5.29 0.09 -10.56 16 13 N -0.74 -9.55 5.55 -66.42 -0.37 -9.92 16 14 C 0.20 2.85 5.80 -5.20 -0.03 2.82 16 15 C -0.21 -3.43 5.25 -104.58 -0.55 -3.98 16 16 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 17 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 18 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 19 O -0.17 -4.80 9.76 0.04 0.00 -4.80 16 20 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 21 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 24 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 C -0.24 -4.91 9.17 -39.40 -0.36 -5.27 16 29 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 30 H 0.06 0.37 5.46 -51.93 -0.28 0.09 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 6.44 -51.93 -0.33 0.01 16 33 H 0.08 0.67 5.90 -51.93 -0.31 0.37 16 34 H 0.08 0.53 8.07 -51.93 -0.42 0.12 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.27 6.19 -51.93 -0.32 -0.05 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 43 H 0.39 3.35 4.68 -40.82 -0.19 3.15 16 44 H 0.40 4.48 8.48 -40.82 -0.35 4.13 16 45 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 46 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 47 H 0.11 1.63 8.06 -52.48 -0.42 1.20 16 48 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 49 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.13 2.65 5.63 -52.49 -0.30 2.36 16 51 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -31.91 402.51 -10.77 -42.68 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.67 Total: 9.37 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -3.14 Total: -10.80 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -1.08 Total: -46.93 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.36 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.91 -10.77 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174660284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.859 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds