Wall clock time and date at job start Wed Apr 1 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47393 * 2 1 4 4 C 1.46955 * 111.00416 * 190.00201 * 3 2 1 5 5 C 1.53048 * 109.36288 * 183.18851 * 4 3 2 6 6 N 1.46957 * 109.36449 * 301.59787 * 5 4 3 7 7 C 1.46900 * 111.00028 * 183.19421 * 6 5 4 8 8 C 1.53004 * 109.47499 * 169.99978 * 7 6 5 9 9 N 1.46497 * 109.47214 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99603 * 180.02562 * 9 8 7 11 11 O 1.21593 * 120.00398 * 359.97438 * 10 9 8 12 12 C 1.47538 * 119.99815 * 179.72773 * 10 9 8 13 13 C 1.39669 * 120.19356 * 0.26645 * 12 10 9 14 14 C 1.37827 * 119.91359 * 179.97438 * 13 12 10 15 15 C 1.38574 * 120.32604 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40261 * 359.97438 * 15 14 13 17 17 C 1.38829 * 120.06892 * 359.70981 * 16 15 14 18 18 O 1.35527 * 120.16115 * 180.27720 * 17 16 15 19 19 C 1.34815 * 116.99844 * 354.39419 * 18 17 16 20 20 H 1.08004 * 119.99886 * 5.06084 * 19 18 17 21 21 C 1.38700 * 119.99941 * 185.06574 * 19 18 17 22 22 N 1.31516 * 119.99835 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46900 * 60.00345 * 23 21 19 25 25 H 1.48498 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47296 * 300.00179 * 23 21 19 27 27 C 1.46955 * 110.88047 * 59.32250 * 6 5 4 28 28 C 1.46957 * 110.99698 * 313.80246 * 3 2 1 29 29 H 1.09007 * 109.46954 * 299.99630 * 1 2 3 30 30 H 1.08995 * 109.47307 * 59.99514 * 1 2 3 31 31 H 1.08997 * 109.46827 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47397 * 240.00327 * 2 1 3 33 33 H 1.09001 * 109.47532 * 120.00130 * 2 1 3 34 34 H 1.08998 * 109.48427 * 63.22128 * 4 3 2 35 35 H 1.08999 * 109.48579 * 303.15310 * 4 3 2 36 36 H 1.08999 * 109.48865 * 181.63327 * 5 4 3 37 37 H 1.08990 * 109.49314 * 61.56555 * 5 4 3 38 38 H 1.08995 * 109.47428 * 49.99818 * 7 6 5 39 39 H 1.09000 * 109.46652 * 289.99658 * 7 6 5 40 40 H 1.09003 * 109.46759 * 59.99799 * 8 7 6 41 41 H 1.08992 * 109.46619 * 300.00113 * 8 7 6 42 42 H 0.97000 * 120.00131 * 359.97438 * 9 8 7 43 43 H 1.07996 * 120.04212 * 359.95928 * 13 12 10 44 44 H 1.07998 * 119.83585 * 180.02562 * 14 13 12 45 45 H 1.08009 * 119.79802 * 179.97438 * 15 14 13 46 46 H 1.07994 * 119.96259 * 179.97438 * 16 15 14 47 47 H 0.96999 * 120.00113 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.49113 * 60.65202 * 27 6 5 49 49 H 1.09000 * 109.49032 * 180.71113 * 27 6 5 50 50 H 1.08997 * 109.49358 * 296.77794 * 28 3 2 51 51 H 1.09006 * 109.49081 * 56.84611 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4691 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1419 7 6 3.7215 5.0791 -1.1420 8 6 3.1349 5.8275 -2.3407 9 7 3.6228 7.2088 -2.3403 10 6 3.2347 8.0607 -3.3099 11 8 2.4800 7.6827 -4.1852 12 6 3.7213 9.4536 -3.3063 13 6 4.5886 9.8920 -2.3031 14 6 5.0400 11.1942 -2.3056 15 6 4.6372 12.0725 -3.2989 16 6 3.7805 11.6533 -4.2966 17 6 3.3208 10.3435 -4.3139 18 8 2.4840 9.9284 -5.2958 19 6 2.0427 10.8642 -6.1601 20 1 2.4210 11.8742 -6.1019 21 6 1.1029 10.5300 -7.1238 22 7 0.6426 9.3001 -7.1948 23 14 0.4909 11.8269 -8.3209 24 1 1.6357 12.3566 -9.1046 25 1 -0.5014 11.2197 -9.2437 26 1 -0.1474 12.9352 -7.5663 27 6 1.7824 3.6479 -0.9036 28 6 1.2999 2.1981 -0.9902 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6874 1.0338 -1.2295 35 1 3.9807 0.8321 0.5150 36 1 5.0214 2.9211 -0.3568 37 1 3.7578 3.2698 0.8479 38 1 4.8093 5.0799 -1.2101 39 1 3.4148 5.5728 -0.2199 40 1 2.0470 5.8267 -2.2725 41 1 3.4415 5.3336 -3.2627 42 1 4.2246 7.5105 -1.6419 43 1 4.9049 9.2116 -1.5264 44 1 5.7109 11.5318 -1.5295 45 1 4.9959 13.0913 -3.2924 46 1 3.4708 12.3439 -5.0670 47 1 -0.0149 9.0664 -7.8685 48 1 1.5640 4.0454 0.0875 49 1 1.2708 4.2470 -1.6569 50 1 1.4936 1.8094 -1.9899 51 1 0.2301 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193871763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:17 Heat of formation + Delta-G solvation = -13.051251 kcal Electronic energy + Delta-G solvation = -30106.613861 eV Core-core repulsion = 26007.201136 eV Total energy + Delta-G solvation = -4099.412725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.80965 -39.46590 -38.07716 -36.52660 -36.29362 -34.09704 -32.32778 -31.79667 -30.98746 -30.51482 -28.92203 -28.48730 -25.78374 -25.28550 -24.19059 -23.09147 -22.05115 -21.67560 -21.13938 -20.03909 -19.78429 -18.02786 -17.54523 -16.77645 -16.10188 -15.76962 -15.58128 -15.29925 -15.05938 -14.76228 -14.69246 -14.57672 -14.46261 -14.11883 -13.95680 -13.82451 -13.63058 -13.41614 -12.88282 -12.71329 -12.56258 -12.48469 -12.29833 -12.00609 -11.70616 -11.65862 -11.59004 -11.47686 -11.36396 -11.19700 -11.11359 -10.91796 -10.87452 -10.79562 -10.71159 -10.46621 -9.56111 -8.86431 -8.83570 -8.68727 -8.52225 -8.48985 -8.25278 -7.29617 -6.42670 -4.02800 1.73339 2.33145 3.12656 3.14785 3.17244 3.34894 3.59333 3.78003 3.94895 4.06475 4.57512 4.64063 4.66447 4.74151 4.82415 4.93919 5.01458 5.08505 5.13752 5.15681 5.17648 5.19577 5.22791 5.26396 5.41085 5.47736 5.48998 5.52076 5.55085 5.63006 5.66573 5.72761 5.76076 5.82320 5.86909 6.00193 6.06024 6.13051 6.20506 6.57416 6.66117 6.69390 6.70465 6.85335 6.88782 6.92407 7.01543 7.07256 7.25154 7.30377 7.70689 7.93645 8.14562 8.96650 9.13018 9.69244 10.71054 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.002183 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.062331 B =12824.245716 C =14802.060876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.057 3.943 5 C 0.059 3.941 6 N -0.536 5.536 7 C 0.048 3.952 8 C 0.128 3.872 9 N -0.745 5.745 10 C 0.555 3.445 11 O -0.500 6.500 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.833 5.833 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.051 3.949 28 C 0.051 3.949 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.391 0.609 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.272 0.728 48 H 0.043 0.957 49 H 0.088 0.912 50 H 0.044 0.956 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 -12.563 15.691 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.076 4.076 3 N -0.268 5.268 4 C -0.071 4.071 5 C -0.069 4.069 6 N -0.262 5.262 7 C -0.080 4.080 8 C 0.004 3.996 9 N -0.401 5.401 10 C 0.344 3.656 11 O -0.374 6.374 12 C -0.231 4.231 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.129 3.871 18 O -0.021 6.021 19 C -0.480 4.480 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.464 5.464 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.077 4.077 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.225 0.775 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.082 0.918 48 H 0.061 0.939 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.477 -13.257 14.768 20.344 hybrid contribution 0.140 0.879 -0.160 0.904 sum 4.617 -12.378 14.608 19.696 Atomic orbital electron populations 1.21941 0.94932 1.01946 1.02683 1.22068 0.95874 0.89007 1.00701 1.62268 1.04056 1.10818 1.49631 1.22146 0.88140 0.96456 1.00339 1.22136 0.98162 0.92763 0.93857 1.62014 1.04350 1.10395 1.49402 1.22225 1.00408 0.87975 0.97419 1.21094 0.98862 0.81562 0.98097 1.45804 1.52477 1.11223 1.30608 1.18206 0.81036 0.85119 0.81235 1.90953 1.33734 1.77328 1.35344 1.18855 1.10131 0.93867 1.00294 1.20753 0.94122 0.95541 0.95319 1.20457 1.07783 0.94443 1.02363 1.20894 0.94596 0.98273 0.93209 1.21155 1.04966 0.96675 1.02927 1.19278 0.89367 0.91122 0.87324 1.84178 1.50380 1.35374 1.32197 1.21450 1.23951 0.91750 1.10860 0.88933 1.25383 0.95711 0.97427 0.97792 1.70119 1.26536 1.17410 1.32311 0.85800 0.78889 0.79447 0.79396 1.19378 1.20164 1.19373 1.22296 0.88068 0.96537 1.00796 1.22286 0.98683 0.92783 0.93893 0.91778 0.92131 0.92177 0.94854 0.90796 0.93834 0.90384 0.90165 0.93945 0.90170 0.94160 0.91892 0.90998 0.77532 0.87091 0.87303 0.87202 0.85085 0.91809 0.93860 0.89407 0.93783 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.18 37.16 0.34 -0.73 16 2 C 0.05 0.39 6.00 -3.82 -0.02 0.37 16 3 N -0.54 -4.97 4.86 -234.47 -1.14 -6.10 16 4 C 0.06 0.49 5.58 -3.77 -0.02 0.47 16 5 C 0.06 0.53 5.61 -3.77 -0.02 0.51 16 6 N -0.54 -5.82 4.71 -234.48 -1.10 -6.92 16 7 C 0.05 0.52 5.07 -3.82 -0.02 0.50 16 8 C 0.13 1.89 5.61 -4.04 -0.02 1.87 16 9 N -0.74 -12.07 5.51 -61.35 -0.34 -12.41 16 10 C 0.55 12.33 7.76 -12.47 -0.10 12.23 16 11 O -0.50 -13.89 15.17 -16.57 -0.25 -14.14 16 12 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 13 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 14 C -0.23 -3.79 10.02 -39.61 -0.40 -4.19 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 16 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 17 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 18 O -0.12 -3.67 7.84 -21.08 -0.17 -3.83 16 19 C -0.40 -11.52 9.49 30.90 0.29 -11.22 16 20 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 21 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 22 N -0.83 -25.28 13.67 55.48 0.76 -24.52 16 23 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 C 0.05 0.55 5.41 -3.77 -0.02 0.53 16 28 C 0.05 0.50 4.93 -3.77 -0.02 0.49 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 6.26 -51.93 -0.33 0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 39 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 40 H 0.06 1.01 6.49 -51.93 -0.34 0.67 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.39 4.98 6.50 -40.82 -0.27 4.71 16 43 H 0.11 1.45 6.40 -52.49 -0.34 1.11 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 46 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 1.03 6.34 -51.93 -0.33 0.70 16 50 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.77 5.99 -51.93 -0.31 0.45 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -34.93 402.87 -11.24 -46.16 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.94 Total: 7.05 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.11 Total: -6.96 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -1.82 Total: -49.96 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.42 Total: -17.97 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.93 -11.24 -46.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193871763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.112 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds