Wall clock time and date at job start Wed Apr 1 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47393 * 2 1 4 4 C 1.46955 * 111.00416 * 190.00201 * 3 2 1 5 5 C 1.53048 * 109.36288 * 183.18851 * 4 3 2 6 6 N 1.46957 * 109.36449 * 301.59787 * 5 4 3 7 7 C 1.46900 * 111.00028 * 183.19421 * 6 5 4 8 8 C 1.53004 * 109.47499 * 169.99978 * 7 6 5 9 9 N 1.46497 * 109.47214 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99603 * 180.02562 * 9 8 7 11 11 O 1.21593 * 120.00398 * 359.97438 * 10 9 8 12 12 C 1.47538 * 119.99815 * 179.72773 * 10 9 8 13 13 C 1.39669 * 120.19356 * 0.26645 * 12 10 9 14 14 C 1.37827 * 119.91359 * 179.97438 * 13 12 10 15 15 C 1.38574 * 120.32604 * 0.02562 * 14 13 12 16 16 C 1.38024 * 120.40261 * 359.97438 * 15 14 13 17 17 C 1.38829 * 120.06892 * 359.70981 * 16 15 14 18 18 O 1.35527 * 120.16115 * 180.27720 * 17 16 15 19 19 C 1.34815 * 116.99844 * 354.39419 * 18 17 16 20 20 H 1.08004 * 119.99886 * 5.06084 * 19 18 17 21 21 C 1.38700 * 119.99941 * 185.06574 * 19 18 17 22 22 N 1.31516 * 119.99835 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46900 * 60.00345 * 23 21 19 25 25 H 1.48498 * 109.46784 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47296 * 300.00179 * 23 21 19 27 27 C 1.46955 * 110.88047 * 59.32250 * 6 5 4 28 28 C 1.46957 * 110.99698 * 313.80246 * 3 2 1 29 29 H 1.09007 * 109.46954 * 299.99630 * 1 2 3 30 30 H 1.08995 * 109.47307 * 59.99514 * 1 2 3 31 31 H 1.08997 * 109.46827 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47397 * 240.00327 * 2 1 3 33 33 H 1.09001 * 109.47532 * 120.00130 * 2 1 3 34 34 H 1.08998 * 109.48427 * 63.22128 * 4 3 2 35 35 H 1.08999 * 109.48579 * 303.15310 * 4 3 2 36 36 H 1.08999 * 109.48865 * 181.63327 * 5 4 3 37 37 H 1.08990 * 109.49314 * 61.56555 * 5 4 3 38 38 H 1.08995 * 109.47428 * 49.99818 * 7 6 5 39 39 H 1.09000 * 109.46652 * 289.99658 * 7 6 5 40 40 H 1.09003 * 109.46759 * 59.99799 * 8 7 6 41 41 H 1.08992 * 109.46619 * 300.00113 * 8 7 6 42 42 H 0.97000 * 120.00131 * 359.97438 * 9 8 7 43 43 H 1.07996 * 120.04212 * 359.95928 * 13 12 10 44 44 H 1.07998 * 119.83585 * 180.02562 * 14 13 12 45 45 H 1.08009 * 119.79802 * 179.97438 * 15 14 13 46 46 H 1.07994 * 119.96259 * 179.97438 * 16 15 14 47 47 H 0.96999 * 120.00113 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.49113 * 60.65202 * 27 6 5 49 49 H 1.09000 * 109.49032 * 180.71113 * 27 6 5 50 50 H 1.08997 * 109.49358 * 296.77794 * 28 3 2 51 51 H 1.09006 * 109.49081 * 56.84611 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4691 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1419 7 6 3.7215 5.0791 -1.1420 8 6 3.1349 5.8275 -2.3407 9 7 3.6228 7.2088 -2.3403 10 6 3.2347 8.0607 -3.3099 11 8 2.4800 7.6827 -4.1852 12 6 3.7213 9.4536 -3.3063 13 6 4.5886 9.8920 -2.3031 14 6 5.0400 11.1942 -2.3056 15 6 4.6372 12.0725 -3.2989 16 6 3.7805 11.6533 -4.2966 17 6 3.3208 10.3435 -4.3139 18 8 2.4840 9.9284 -5.2958 19 6 2.0427 10.8642 -6.1601 20 1 2.4210 11.8742 -6.1019 21 6 1.1029 10.5300 -7.1238 22 7 0.6426 9.3001 -7.1948 23 14 0.4909 11.8269 -8.3209 24 1 1.6357 12.3566 -9.1046 25 1 -0.5014 11.2197 -9.2437 26 1 -0.1474 12.9352 -7.5663 27 6 1.7824 3.6479 -0.9036 28 6 1.2999 2.1981 -0.9902 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6874 1.0338 -1.2295 35 1 3.9807 0.8321 0.5150 36 1 5.0214 2.9211 -0.3568 37 1 3.7578 3.2698 0.8479 38 1 4.8093 5.0799 -1.2101 39 1 3.4148 5.5728 -0.2199 40 1 2.0470 5.8267 -2.2725 41 1 3.4415 5.3336 -3.2627 42 1 4.2246 7.5105 -1.6419 43 1 4.9049 9.2116 -1.5264 44 1 5.7109 11.5318 -1.5295 45 1 4.9959 13.0913 -3.2924 46 1 3.4708 12.3439 -5.0670 47 1 -0.0149 9.0664 -7.8685 48 1 1.5640 4.0454 0.0875 49 1 1.2708 4.2470 -1.6569 50 1 1.4936 1.8094 -1.9899 51 1 0.2301 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193871763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:16 Heat of formation + Delta-G solvation = -39.919512 kcal Electronic energy + Delta-G solvation = -30107.778956 eV Core-core repulsion = 26007.201136 eV Total energy + Delta-G solvation = -4100.577820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.29695 -40.50706 -39.75586 -38.02446 -37.44461 -35.51632 -34.32109 -32.78103 -32.05964 -31.57512 -30.56271 -29.55696 -27.39612 -26.60471 -25.00270 -24.53603 -23.29088 -22.65822 -22.38647 -21.50510 -20.71449 -19.84345 -19.23023 -17.90779 -17.57960 -16.91535 -16.77869 -16.35849 -16.09485 -16.01489 -15.91737 -15.83174 -15.75480 -15.45560 -15.38217 -15.28943 -14.97877 -14.59436 -14.27434 -14.15192 -14.01027 -13.54552 -13.34711 -13.14627 -12.99927 -12.74347 -12.69503 -12.59564 -12.49902 -12.35866 -12.34262 -12.25572 -12.14712 -12.03058 -11.68454 -11.52947 -11.43014 -10.82188 -10.64033 -10.11468 -9.77385 -9.46556 -9.27732 -9.02955 -8.44074 -6.15275 0.13162 0.73834 1.32032 1.45237 1.50140 2.10075 2.11414 2.16502 2.88249 2.90079 3.01294 3.23363 3.47914 3.75071 3.85468 3.96275 4.00002 4.05783 4.09981 4.16186 4.23842 4.30007 4.33442 4.39688 4.46235 4.50364 4.52241 4.54757 4.58548 4.64868 4.78804 4.83227 4.88267 4.88686 4.91784 4.97795 5.00735 5.07208 5.08090 5.12505 5.15331 5.28168 5.48834 5.49964 5.62046 5.70638 5.90100 5.93330 5.96462 6.11273 6.14256 6.18188 6.69878 6.94979 7.48673 7.81138 8.76344 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.002183 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.062331 B =12824.245716 C =14802.060876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 N -0.547 5.547 4 C 0.057 3.943 5 C 0.061 3.939 6 N -0.551 5.551 7 C 0.063 3.937 8 C 0.131 3.869 9 N -0.716 5.716 10 C 0.548 3.452 11 O -0.570 6.570 12 C -0.245 4.245 13 C -0.029 4.029 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.148 3.852 18 O -0.189 6.189 19 C -0.428 4.428 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.906 5.906 23 Si 1.022 2.978 24 H -0.253 1.253 25 H -0.274 1.274 26 H -0.254 1.254 27 C 0.053 3.947 28 C 0.056 3.944 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.413 0.587 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.271 0.729 48 H 0.045 0.955 49 H 0.068 0.932 50 H 0.028 0.972 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -11.179 19.533 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 N -0.273 5.273 4 C -0.071 4.071 5 C -0.066 4.066 6 N -0.277 5.277 7 C -0.065 4.065 8 C 0.006 3.994 9 N -0.372 5.372 10 C 0.338 3.662 11 O -0.449 6.449 12 C -0.250 4.250 13 C -0.047 4.047 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.278 4.278 17 C 0.092 3.908 18 O -0.092 6.092 19 C -0.504 4.504 20 H 0.124 0.876 21 C -0.222 4.222 22 N -0.542 5.542 23 Si 0.840 3.160 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.075 4.075 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.180 0.820 44 H 0.183 0.817 45 H 0.172 0.828 46 H 0.141 0.859 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.728 -11.860 18.726 23.475 hybrid contribution -0.522 0.451 -0.940 1.166 sum 7.207 -11.409 17.786 22.326 Atomic orbital electron populations 1.21915 0.94505 1.02666 1.02138 1.22139 0.96281 0.88178 1.01129 1.62318 1.04435 1.11582 1.48943 1.22209 0.87925 0.96589 1.00410 1.22205 0.98729 0.92391 0.93313 1.61982 1.04387 1.10587 1.50737 1.22082 1.01189 0.87696 0.95539 1.21110 0.98080 0.80907 0.99261 1.45488 1.51377 1.11010 1.29287 1.18551 0.80267 0.86118 0.81287 1.90936 1.36990 1.78579 1.38376 1.19295 1.11195 0.93414 1.01095 1.21319 0.91794 0.97161 0.94436 1.21188 1.05639 0.93193 1.01846 1.21444 0.92216 1.00667 0.91484 1.21302 1.06557 0.95324 1.04582 1.20110 0.89398 0.93486 0.87757 1.84184 1.53720 1.36605 1.34650 1.22006 1.24542 0.92490 1.11367 0.87567 1.26776 0.95666 0.99949 0.99838 1.70321 1.28907 1.20486 1.34470 0.84623 0.78556 0.76232 0.76551 1.17751 1.19834 1.17782 1.22220 0.88301 0.96909 1.00083 1.22204 0.99227 0.92357 0.93423 0.92005 0.92934 0.90868 0.95127 0.89539 0.94946 0.88375 0.88557 0.93539 0.88007 0.92571 0.93824 0.93496 0.74905 0.82030 0.81725 0.82838 0.85927 0.92045 0.93684 0.91390 0.95338 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.18 71.98 0.66 -1.33 16 2 C 0.05 0.70 6.00 86.30 0.52 1.22 16 3 N -0.55 -9.46 4.86 -895.72 -4.35 -13.81 16 4 C 0.06 0.88 5.58 86.31 0.48 1.36 16 5 C 0.06 0.96 5.61 86.31 0.48 1.44 16 6 N -0.55 -11.48 4.71 -895.75 -4.22 -15.70 16 7 C 0.06 1.25 5.07 86.30 0.44 1.69 16 8 C 0.13 3.95 5.61 86.38 0.48 4.44 16 9 N -0.72 -22.76 5.51 -466.27 -2.57 -25.32 16 10 C 0.55 25.28 7.76 86.70 0.67 25.95 16 11 O -0.57 -34.45 15.17 16.89 0.26 -34.19 16 12 C -0.25 -10.71 5.89 -19.99 -0.12 -10.83 16 13 C -0.03 -0.85 9.54 22.52 0.21 -0.64 16 14 C -0.20 -5.26 10.02 22.25 0.22 -5.03 16 15 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 16 C -0.26 -11.10 9.16 22.36 0.20 -10.89 16 17 C 0.15 7.69 6.66 22.91 0.15 7.84 16 18 O -0.19 -12.19 7.84 0.76 0.01 -12.19 16 19 C -0.43 -26.21 9.49 67.93 0.64 -25.56 16 20 H 0.11 5.81 5.21 -2.91 -0.02 5.79 16 21 C -0.02 -1.39 5.49 84.85 0.47 -0.93 16 22 N -0.91 -60.08 13.67 21.62 0.30 -59.79 16 23 Si 1.02 44.69 29.55 68.60 2.03 46.72 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 27 C 0.05 1.16 5.41 86.31 0.47 1.63 16 28 C 0.06 1.12 4.93 86.31 0.43 1.54 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.75 6.26 -2.39 -0.01 0.74 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.03 0.45 8.08 -2.39 -0.02 0.43 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 39 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 40 H 0.04 1.51 6.49 -2.39 -0.02 1.49 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.41 9.11 6.50 -92.71 -0.60 8.50 16 43 H 0.16 3.11 6.40 -2.91 -0.02 3.09 16 44 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 46 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 47 H 0.27 16.46 8.31 -92.71 -0.77 15.68 16 48 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.07 1.73 6.34 -2.39 -0.02 1.72 16 50 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.09 1.68 5.99 -2.38 -0.01 1.67 16 Total: -1.00 -89.38 402.87 -1.57 -90.95 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.34 Total: 32.44 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 6.64 Total: -9.12 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -10.84 Total: -114.62 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: 0.26 Total: -46.38 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -89.38 -1.57 -90.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193871763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.032 kcal (2) G-P(sol) polarization free energy of solvation -89.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds