Wall clock time and date at job start Wed Apr 1 2020 04:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47368 * 2 1 4 4 C 1.50703 * 109.47344 * 120.00543 * 2 1 3 5 5 O 1.21279 * 119.99746 * 89.16476 * 4 2 1 6 6 N 1.34770 * 119.99890 * 269.16165 * 4 2 1 7 7 C 1.46498 * 120.00111 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47570 * 180.02562 * 7 6 4 9 9 C 1.38298 * 119.93152 * 269.73627 * 8 7 6 10 10 C 1.38103 * 120.06778 * 179.72297 * 9 8 7 11 11 C 1.38880 * 119.92978 * 0.56585 * 10 9 8 12 12 O 1.35746 * 120.06766 * 179.68143 * 11 10 9 13 13 C 1.34827 * 116.99816 * 181.45890 * 12 11 10 14 14 H 1.07996 * 120.00227 * 355.27177 * 13 12 11 15 15 C 1.38654 * 120.00100 * 175.26764 * 13 12 11 16 16 N 1.31558 * 120.00055 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46779 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47218 * 119.99964 * 17 15 13 20 20 H 1.48500 * 109.47544 * 240.00597 * 17 15 13 21 21 C 1.38877 * 119.85934 * 359.70529 * 11 10 9 22 22 C 1.38100 * 119.93484 * 359.97438 * 21 11 10 23 23 N 1.46898 * 109.46981 * 240.00415 * 2 1 3 24 24 C 1.46964 * 111.00302 * 186.73311 * 23 2 1 25 25 C 1.53045 * 109.36675 * 183.18766 * 24 23 2 26 26 N 1.46958 * 109.36599 * 301.60385 * 25 24 23 27 27 C 1.46898 * 111.00022 * 183.18881 * 26 25 24 28 28 C 1.46954 * 110.88254 * 59.32098 * 26 25 24 29 29 C 1.46957 * 111.00455 * 310.53418 * 23 2 1 30 30 H 1.09005 * 109.46950 * 299.99143 * 1 2 3 31 31 H 1.08995 * 109.47281 * 59.99460 * 1 2 3 32 32 H 1.09003 * 109.46661 * 179.97438 * 1 2 3 33 33 H 0.97008 * 120.00079 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47329 * 300.00871 * 7 6 4 35 35 H 1.09004 * 109.46994 * 60.00327 * 7 6 4 36 36 H 1.07998 * 119.96808 * 359.96720 * 9 8 7 37 37 H 1.07998 * 120.03144 * 180.26768 * 10 9 8 38 38 H 0.96998 * 120.00564 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.03112 * 179.97438 * 21 11 10 40 40 H 1.07995 * 119.96463 * 179.97438 * 22 21 11 41 41 H 1.09003 * 109.48526 * 63.22104 * 24 23 2 42 42 H 1.08999 * 109.50382 * 303.16869 * 24 23 2 43 43 H 1.08997 * 109.49227 * 181.63422 * 25 24 23 44 44 H 1.09007 * 109.49136 * 61.57097 * 25 24 23 45 45 H 1.09004 * 109.47262 * 59.99673 * 27 26 25 46 46 H 1.08999 * 109.47455 * 299.99845 * 27 26 25 47 47 H 1.08994 * 109.47546 * 179.97438 * 27 26 25 48 48 H 1.08994 * 109.49054 * 60.64720 * 28 26 25 49 49 H 1.08999 * 109.48801 * 180.71556 * 28 26 25 50 50 H 1.08998 * 109.48829 * 296.78334 * 29 23 2 51 51 H 1.09007 * 109.48318 * 56.81988 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.2201 -1.9084 1.2047 6 7 2.2731 -0.0148 2.3592 7 6 2.7610 -0.7055 3.5555 8 6 2.9476 0.2913 4.6703 9 6 4.1647 0.9283 4.8298 10 6 4.3370 1.8464 5.8469 11 6 3.2902 2.1212 6.7172 12 8 3.4585 3.0184 7.7219 13 6 2.4116 3.2154 8.5483 14 1 1.4682 2.7286 8.3503 15 6 2.5463 4.0429 9.6526 16 7 3.6954 4.6363 9.8938 17 14 1.0961 4.3154 10.7982 18 1 -0.0726 3.5401 10.3101 19 1 1.4539 3.8620 12.1662 20 1 0.7542 5.7602 10.8290 21 6 2.0709 1.4756 6.5577 22 6 1.9028 0.5634 5.5346 23 7 2.0196 -0.6924 -1.1995 24 6 3.4798 -0.8530 -1.1558 25 6 3.9577 -1.5052 -2.4553 26 7 3.2925 -2.8050 -2.6214 27 6 3.7822 -3.4974 -3.8209 28 6 1.8325 -2.6445 -2.6652 29 6 1.3546 -1.9923 -1.3657 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.1227 0.9434 2.3799 34 1 2.0358 -1.4598 3.8606 35 1 3.7139 -1.1862 3.3342 36 1 4.9800 0.7104 4.1560 37 1 5.2864 2.3467 5.9683 38 1 3.7896 5.2156 10.6661 39 1 1.2550 1.6869 7.2332 40 1 0.9550 0.0608 5.4104 41 1 3.7510 -1.4853 -0.3104 42 1 3.9502 0.1240 -1.0449 43 1 5.0370 -1.6517 -2.4131 44 1 3.7107 -0.8599 -3.2984 45 1 4.8559 -3.6631 -3.7320 46 1 3.5805 -2.8866 -4.7009 47 1 3.2739 -4.4565 -3.9198 48 1 1.5613 -2.0122 -3.5106 49 1 1.3623 -3.6216 -2.7760 50 1 1.6015 -2.6375 -0.5227 51 1 0.2752 -1.8457 -1.4075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263941526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:30 Heat of formation + Delta-G solvation = -17.949898 kcal Electronic energy + Delta-G solvation = -30161.966772 eV Core-core repulsion = 26062.341627 eV Total energy + Delta-G solvation = -4099.625146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.74275 -39.25093 -38.60049 -36.95423 -35.74992 -34.45984 -32.42877 -31.86377 -31.10128 -30.31541 -29.77643 -27.76202 -26.17979 -25.21783 -24.32841 -23.66399 -22.59329 -22.08657 -20.68198 -20.53287 -19.79630 -18.11137 -17.48308 -16.97670 -16.79633 -15.72086 -15.62734 -15.19942 -15.10257 -15.05307 -14.84035 -14.68339 -14.48963 -14.31950 -14.02338 -13.70738 -13.53309 -13.47489 -12.89444 -12.82109 -12.78082 -12.60929 -12.46725 -12.22038 -12.07872 -11.87585 -11.73904 -11.68021 -11.45990 -11.28336 -11.00725 -10.97319 -10.86086 -10.80954 -10.72575 -10.49795 -10.29797 -9.45549 -9.00969 -8.95314 -8.64776 -8.32112 -8.29110 -7.34459 -6.55902 -4.14740 2.03784 2.09600 2.54895 3.05095 3.07675 3.13254 3.34569 3.58546 3.67331 3.87843 4.44347 4.58693 4.64717 4.68813 4.79481 4.91845 4.98294 4.99604 5.06672 5.12404 5.20805 5.22249 5.24913 5.29475 5.31681 5.37261 5.39475 5.50692 5.54949 5.57051 5.62552 5.70282 5.76693 5.79837 5.86159 5.89986 6.06281 6.08983 6.31458 6.49382 6.56869 6.59827 6.67580 6.77057 6.83704 6.85930 6.92630 7.11023 7.23991 7.32123 7.53992 7.68570 7.88846 8.20091 8.89541 9.57429 10.61631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027619 B = 0.001753 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.550462 B =15972.901557 C =16443.175769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.102 0.898 4 C 0.482 3.518 5 O -0.540 6.540 6 N -0.718 5.718 7 C 0.178 3.822 8 C -0.215 4.215 9 C -0.054 4.054 10 C -0.195 4.195 11 C 0.160 3.840 12 O -0.173 6.173 13 C -0.394 4.394 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.858 5.858 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.237 4.237 22 C -0.051 4.051 23 N -0.512 5.512 24 C 0.042 3.958 25 C 0.062 3.938 26 N -0.543 5.543 27 C 0.026 3.974 28 C 0.060 3.940 29 C 0.031 3.969 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.024 0.976 47 H 0.067 0.933 48 H 0.036 0.964 49 H 0.077 0.923 50 H 0.085 0.915 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -10.105 -23.290 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 H 0.120 0.880 4 C 0.267 3.733 5 O -0.418 6.418 6 N -0.370 5.370 7 C 0.056 3.944 8 C -0.216 4.216 9 C -0.073 4.073 10 C -0.215 4.215 11 C 0.106 3.894 12 O -0.075 6.075 13 C -0.470 4.470 14 H 0.112 0.888 15 C -0.165 4.165 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.257 4.257 22 C -0.070 4.070 23 N -0.236 5.236 24 C -0.086 4.086 25 C -0.066 4.066 26 N -0.268 5.268 27 C -0.122 4.122 28 C -0.068 4.068 29 C -0.096 4.096 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.086 0.914 48 H 0.055 0.945 49 H 0.095 0.905 50 H 0.103 0.897 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.832 -10.665 -23.052 25.687 hybrid contribution -0.724 0.682 0.701 1.218 sum -4.557 -9.983 -22.350 24.899 Atomic orbital electron populations 1.21854 0.91851 1.03222 1.03212 1.21890 0.97506 0.98974 0.86511 0.87965 1.21932 0.77825 0.88294 0.85293 1.90643 1.52688 1.14694 1.83818 1.46560 1.66553 1.12187 1.11672 1.19967 0.99091 0.93050 0.82307 1.19199 0.95706 1.05601 1.01141 1.20520 0.95901 0.94690 0.96209 1.20206 0.98709 1.04078 0.98466 1.19437 0.92903 0.88209 0.88899 1.83982 1.39530 1.49525 1.34476 1.21409 0.90525 1.29888 1.05152 0.88836 1.25326 0.98389 0.95801 0.96956 1.70043 1.23714 1.27883 1.27624 0.85625 0.79605 0.78620 0.79465 1.19036 1.20042 1.20045 1.21163 0.98855 1.03047 1.02599 1.20632 0.97034 0.95735 0.93554 1.62682 1.05576 1.21524 1.33772 1.22323 0.87678 1.00355 0.98212 1.22095 0.98546 0.89041 0.96899 1.62109 1.05464 1.20755 1.38472 1.22337 1.01069 0.98557 0.90256 1.22155 0.87628 0.99825 0.97170 1.22581 0.98324 0.90184 0.98513 0.91364 0.90596 0.91551 0.76425 0.91715 0.91685 0.87033 0.86376 0.91897 0.85389 0.87460 0.91933 0.90580 0.90400 0.94242 0.91411 0.95778 0.91419 0.94536 0.90507 0.89745 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.58 37.16 0.32 -0.82 16 2 C 0.06 0.60 2.97 -68.87 -0.20 0.39 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.48 5.82 5.90 -10.99 -0.06 5.75 16 5 O -0.54 -8.29 12.56 5.56 0.07 -8.22 16 6 N -0.72 -8.42 5.55 -61.47 -0.34 -8.77 16 7 C 0.18 2.43 5.80 -5.19 -0.03 2.40 16 8 C -0.22 -3.36 5.25 -104.58 -0.55 -3.91 16 9 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 10 C -0.20 -3.88 9.99 -39.39 -0.39 -4.27 16 11 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 12 O -0.17 -4.75 9.76 0.07 0.00 -4.74 16 13 C -0.39 -10.61 9.48 30.89 0.29 -10.32 16 14 H 0.09 2.33 5.19 -52.49 -0.27 2.05 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 17 Si 0.94 19.87 29.55 -169.99 -5.02 14.84 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16 22 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 23 N -0.51 -5.16 4.79 -227.87 -1.09 -6.25 16 24 C 0.04 0.44 5.10 -3.77 -0.02 0.42 16 25 C 0.06 0.59 5.62 -3.77 -0.02 0.57 16 26 N -0.54 -5.39 4.97 -242.77 -1.21 -6.60 16 27 C 0.03 0.20 9.60 60.06 0.58 0.77 16 28 C 0.06 0.56 5.62 -3.77 -0.02 0.54 16 29 C 0.03 0.32 4.73 -3.77 -0.02 0.31 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.57 6.24 -51.93 -0.32 0.25 16 33 H 0.40 4.16 8.46 -40.82 -0.35 3.82 16 34 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.13 2.64 5.62 -52.48 -0.30 2.35 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.06 0.83 6.09 -51.93 -0.32 0.51 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 47 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 50 H 0.08 1.13 5.55 -51.93 -0.29 0.84 16 51 H 0.08 0.71 5.99 -51.92 -0.31 0.40 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -30.92 402.85 -10.42 -41.34 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.05 Total: 7.54 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.62 Total: -11.52 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -1.88 Total: -45.33 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.92 -10.42 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263941526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.394 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds