Wall clock time and date at job start Wed Apr 1 2020 04:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47368 * 2 1 4 4 C 1.50703 * 109.47344 * 120.00543 * 2 1 3 5 5 O 1.21279 * 119.99746 * 89.16476 * 4 2 1 6 6 N 1.34770 * 119.99890 * 269.16165 * 4 2 1 7 7 C 1.46498 * 120.00111 * 179.97438 * 6 4 2 8 8 C 1.50702 * 109.47570 * 180.02562 * 7 6 4 9 9 C 1.38298 * 119.93152 * 269.73627 * 8 7 6 10 10 C 1.38103 * 120.06778 * 179.72297 * 9 8 7 11 11 C 1.38880 * 119.92978 * 0.56585 * 10 9 8 12 12 O 1.35746 * 120.06766 * 179.68143 * 11 10 9 13 13 C 1.34827 * 116.99816 * 181.45890 * 12 11 10 14 14 H 1.07996 * 120.00227 * 355.27177 * 13 12 11 15 15 C 1.38654 * 120.00100 * 175.26764 * 13 12 11 16 16 N 1.31558 * 120.00055 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00377 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46779 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47218 * 119.99964 * 17 15 13 20 20 H 1.48500 * 109.47544 * 240.00597 * 17 15 13 21 21 C 1.38877 * 119.85934 * 359.70529 * 11 10 9 22 22 C 1.38100 * 119.93484 * 359.97438 * 21 11 10 23 23 N 1.46898 * 109.46981 * 240.00415 * 2 1 3 24 24 C 1.46964 * 111.00302 * 186.73311 * 23 2 1 25 25 C 1.53045 * 109.36675 * 183.18766 * 24 23 2 26 26 N 1.46958 * 109.36599 * 301.60385 * 25 24 23 27 27 C 1.46898 * 111.00022 * 183.18881 * 26 25 24 28 28 C 1.46954 * 110.88254 * 59.32098 * 26 25 24 29 29 C 1.46957 * 111.00455 * 310.53418 * 23 2 1 30 30 H 1.09005 * 109.46950 * 299.99143 * 1 2 3 31 31 H 1.08995 * 109.47281 * 59.99460 * 1 2 3 32 32 H 1.09003 * 109.46661 * 179.97438 * 1 2 3 33 33 H 0.97008 * 120.00079 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47329 * 300.00871 * 7 6 4 35 35 H 1.09004 * 109.46994 * 60.00327 * 7 6 4 36 36 H 1.07998 * 119.96808 * 359.96720 * 9 8 7 37 37 H 1.07998 * 120.03144 * 180.26768 * 10 9 8 38 38 H 0.96998 * 120.00564 * 179.97438 * 16 15 13 39 39 H 1.08008 * 120.03112 * 179.97438 * 21 11 10 40 40 H 1.07995 * 119.96463 * 179.97438 * 22 21 11 41 41 H 1.09003 * 109.48526 * 63.22104 * 24 23 2 42 42 H 1.08999 * 109.50382 * 303.16869 * 24 23 2 43 43 H 1.08997 * 109.49227 * 181.63422 * 25 24 23 44 44 H 1.09007 * 109.49136 * 61.57097 * 25 24 23 45 45 H 1.09004 * 109.47262 * 59.99673 * 27 26 25 46 46 H 1.08999 * 109.47455 * 299.99845 * 27 26 25 47 47 H 1.08994 * 109.47546 * 179.97438 * 27 26 25 48 48 H 1.08994 * 109.49054 * 60.64720 * 28 26 25 49 49 H 1.08999 * 109.48801 * 180.71556 * 28 26 25 50 50 H 1.08998 * 109.48829 * 296.78334 * 29 23 2 51 51 H 1.09007 * 109.48318 * 56.81988 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.2201 -1.9084 1.2047 6 7 2.2731 -0.0148 2.3592 7 6 2.7610 -0.7055 3.5555 8 6 2.9476 0.2913 4.6703 9 6 4.1647 0.9283 4.8298 10 6 4.3370 1.8464 5.8469 11 6 3.2902 2.1212 6.7172 12 8 3.4585 3.0184 7.7219 13 6 2.4116 3.2154 8.5483 14 1 1.4682 2.7286 8.3503 15 6 2.5463 4.0429 9.6526 16 7 3.6954 4.6363 9.8938 17 14 1.0961 4.3154 10.7982 18 1 -0.0726 3.5401 10.3101 19 1 1.4539 3.8620 12.1662 20 1 0.7542 5.7602 10.8290 21 6 2.0709 1.4756 6.5577 22 6 1.9028 0.5634 5.5346 23 7 2.0196 -0.6924 -1.1995 24 6 3.4798 -0.8530 -1.1558 25 6 3.9577 -1.5052 -2.4553 26 7 3.2925 -2.8050 -2.6214 27 6 3.7822 -3.4974 -3.8209 28 6 1.8325 -2.6445 -2.6652 29 6 1.3546 -1.9923 -1.3657 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.1227 0.9434 2.3799 34 1 2.0358 -1.4598 3.8606 35 1 3.7139 -1.1862 3.3342 36 1 4.9800 0.7104 4.1560 37 1 5.2864 2.3467 5.9683 38 1 3.7896 5.2156 10.6661 39 1 1.2550 1.6869 7.2332 40 1 0.9550 0.0608 5.4104 41 1 3.7510 -1.4853 -0.3104 42 1 3.9502 0.1240 -1.0449 43 1 5.0370 -1.6517 -2.4131 44 1 3.7107 -0.8599 -3.2984 45 1 4.8559 -3.6631 -3.7320 46 1 3.5805 -2.8866 -4.7009 47 1 3.2739 -4.4565 -3.9198 48 1 1.5613 -2.0122 -3.5106 49 1 1.3623 -3.6216 -2.7760 50 1 1.6015 -2.6375 -0.5227 51 1 0.2752 -1.8457 -1.4075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263941526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:29 Heat of formation + Delta-G solvation = -40.880215 kcal Electronic energy + Delta-G solvation = -30162.961106 eV Core-core repulsion = 26062.341627 eV Total energy + Delta-G solvation = -4100.619479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64994 -40.82984 -39.53966 -38.49211 -36.58388 -35.63406 -34.29211 -32.67432 -31.96068 -31.83040 -31.05679 -28.42456 -27.76694 -26.65222 -25.23062 -24.40864 -23.66196 -23.48773 -22.13166 -21.38981 -20.69649 -19.87992 -18.92066 -18.22074 -17.66625 -16.73578 -16.63737 -16.34852 -16.24378 -15.95029 -15.93051 -15.77436 -15.73230 -15.53620 -15.36913 -15.05409 -14.90321 -14.46645 -14.35894 -14.10777 -13.69756 -13.47867 -13.42100 -13.24090 -13.10498 -13.04175 -12.86592 -12.61767 -12.54496 -12.38708 -12.35837 -12.26519 -12.09767 -12.07882 -11.70587 -11.57746 -11.26685 -11.20994 -10.82738 -10.06343 -9.82530 -9.39072 -9.19387 -8.93793 -8.49252 -6.17353 0.53584 0.56197 1.35781 1.43021 1.53591 1.60757 2.16319 2.29086 2.81888 2.84890 3.00488 3.16302 3.47068 3.77299 3.87326 3.90713 3.93806 4.01361 4.11236 4.15828 4.23727 4.25951 4.41141 4.43288 4.48918 4.52336 4.55272 4.64008 4.66760 4.71870 4.76084 4.78972 4.79648 4.92069 4.98146 4.99629 5.01399 5.02503 5.13602 5.20450 5.24530 5.25086 5.48510 5.52325 5.67959 5.73589 5.84385 5.92189 6.00674 6.12548 6.14334 6.15501 6.58652 6.95762 7.25764 7.74762 8.73749 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027619 B = 0.001753 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.550462 B =15972.901557 C =16443.175769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.065 3.935 3 H 0.122 0.878 4 C 0.484 3.516 5 O -0.572 6.572 6 N -0.713 5.713 7 C 0.186 3.814 8 C -0.181 4.181 9 C -0.044 4.044 10 C -0.204 4.204 11 C 0.123 3.877 12 O -0.229 6.229 13 C -0.413 4.413 14 H 0.104 0.896 15 C -0.022 4.022 16 N -0.918 5.918 17 Si 1.018 2.982 18 H -0.250 1.250 19 H -0.270 1.270 20 H -0.268 1.268 21 C -0.244 4.244 22 C -0.045 4.045 23 N -0.507 5.507 24 C 0.044 3.956 25 C 0.065 3.935 26 N -0.565 5.565 27 C 0.028 3.972 28 C 0.063 3.937 29 C 0.035 3.965 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.033 0.967 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.041 0.959 49 H 0.083 0.917 50 H 0.054 0.946 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -11.224 -25.845 28.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 H 0.140 0.860 4 C 0.270 3.730 5 O -0.452 6.452 6 N -0.365 5.365 7 C 0.062 3.938 8 C -0.183 4.183 9 C -0.063 4.063 10 C -0.224 4.224 11 C 0.072 3.928 12 O -0.135 6.135 13 C -0.489 4.489 14 H 0.122 0.878 15 C -0.220 4.220 16 N -0.556 5.556 17 Si 0.837 3.163 18 H -0.174 1.174 19 H -0.195 1.195 20 H -0.193 1.193 21 C -0.263 4.263 22 C -0.064 4.064 23 N -0.231 5.231 24 C -0.084 4.084 25 C -0.064 4.064 26 N -0.290 5.290 27 C -0.120 4.120 28 C -0.065 4.065 29 C -0.093 4.093 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.072 0.928 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.476 -11.811 -25.671 28.783 hybrid contribution -0.164 0.761 1.150 1.389 sum -5.639 -11.050 -24.521 27.481 Atomic orbital electron populations 1.21851 0.90506 1.03004 1.04354 1.22053 0.98515 0.99354 0.84774 0.86013 1.22424 0.76929 0.87874 0.85751 1.90655 1.53932 1.16316 1.84306 1.46393 1.66428 1.12607 1.11035 1.19814 0.99514 0.92293 0.82138 1.19480 0.94660 1.03735 1.00378 1.20855 0.97239 0.92953 0.95212 1.20436 0.98104 1.04903 0.98910 1.19986 0.94885 0.88963 0.89009 1.83951 1.40446 1.52496 1.36571 1.21875 0.91110 1.30303 1.05642 0.87838 1.26582 1.01530 0.95332 0.98509 1.70182 1.26451 1.30005 1.28982 0.84533 0.76060 0.78831 0.76832 1.17364 1.19530 1.19330 1.21246 0.97780 1.03683 1.03567 1.20923 0.98731 0.94523 0.92220 1.62753 1.05364 1.21258 1.33720 1.22304 0.88024 1.00412 0.97646 1.22080 0.98877 0.88987 0.96412 1.62121 1.05837 1.21160 1.39862 1.22358 1.01354 0.98681 0.89632 1.22142 0.87534 1.00221 0.96651 1.22523 0.99099 0.89806 0.97849 0.90541 0.89156 0.92429 0.75319 0.91541 0.91499 0.83696 0.86690 0.91796 0.86158 0.84378 0.94891 0.89412 0.89804 0.93782 0.90981 0.95094 0.90844 0.94069 0.89825 0.92814 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.58 71.98 0.62 -1.18 16 2 C 0.07 1.05 2.97 44.17 0.13 1.18 16 3 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.48 10.52 5.90 87.66 0.52 11.03 16 5 O -0.57 -16.73 12.56 -3.03 -0.04 -16.77 16 6 N -0.71 -14.41 5.55 -466.79 -2.59 -17.00 16 7 C 0.19 4.43 5.80 85.63 0.50 4.93 16 8 C -0.18 -5.12 5.25 -19.83 -0.10 -5.22 16 9 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 10 C -0.20 -8.12 9.99 22.39 0.22 -7.90 16 11 C 0.12 5.78 6.65 22.58 0.15 5.93 16 12 O -0.23 -13.29 9.76 -22.67 -0.22 -13.51 16 13 C -0.41 -23.29 9.48 67.92 0.64 -22.65 16 14 H 0.10 5.32 5.19 -2.91 -0.02 5.31 16 15 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 16 N -0.92 -55.18 13.67 21.61 0.30 -54.89 16 17 Si 1.02 41.69 29.55 68.60 2.03 43.71 16 18 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 C -0.24 -9.90 9.17 22.39 0.21 -9.69 16 22 C -0.05 -1.43 9.69 22.25 0.22 -1.21 16 23 N -0.51 -9.12 4.79 -874.85 -4.19 -13.31 16 24 C 0.04 0.85 5.10 86.31 0.44 1.29 16 25 C 0.06 1.10 5.62 86.31 0.49 1.59 16 26 N -0.56 -10.35 4.97 -921.97 -4.58 -14.93 16 27 C 0.03 0.37 9.60 127.69 1.23 1.59 16 28 C 0.06 1.06 5.62 86.31 0.49 1.54 16 29 C 0.03 0.67 4.73 86.31 0.41 1.08 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.86 6.24 -2.39 -0.01 0.84 16 33 H 0.41 6.99 8.46 -92.70 -0.78 6.21 16 34 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.07 1.65 8.08 -2.38 -0.02 1.63 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.12 5.02 5.62 -2.91 -0.02 5.00 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.03 0.84 6.09 -2.39 -0.01 0.83 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 48 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.26 8.13 -2.39 -0.02 1.24 16 50 H 0.05 1.40 5.55 -2.39 -0.01 1.39 16 51 H 0.09 1.47 5.99 -2.38 -0.01 1.45 16 Total: -1.00 -71.83 402.85 -2.31 -74.15 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.15 Total: 32.11 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 6.82 Total: -19.56 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -11.06 Total: -100.12 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.26 Total: -30.28 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -71.83 -2.31 -74.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263941526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.267 kcal (2) G-P(sol) polarization free energy of solvation -71.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds