Wall clock time and date at job start Wed Apr 1 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46927 * 2 1 4 4 C 1.50699 * 109.47286 * 239.99978 * 2 1 3 5 5 O 1.21282 * 119.99760 * 239.99979 * 4 2 1 6 6 N 1.34768 * 120.00150 * 59.99606 * 4 2 1 7 7 C 1.46503 * 120.00179 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47448 * 180.02562 * 7 6 4 9 9 C 1.38299 * 119.93217 * 269.73027 * 8 7 6 10 10 C 1.38093 * 120.06953 * 179.72477 * 9 8 7 11 11 C 1.38883 * 119.92808 * 0.56550 * 10 9 8 12 12 O 1.35754 * 120.06438 * 179.68623 * 11 10 9 13 13 C 1.34826 * 116.99724 * 174.49160 * 12 11 10 14 14 H 1.07998 * 120.00100 * 5.04739 * 13 12 11 15 15 C 1.38654 * 119.99970 * 185.05457 * 13 12 11 16 16 N 1.31562 * 120.00282 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00220 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47275 * 89.99838 * 17 15 13 19 19 H 1.48495 * 109.47094 * 210.00170 * 17 15 13 20 20 H 1.48506 * 109.46791 * 330.00186 * 17 15 13 21 21 C 1.38871 * 119.86468 * 359.70509 * 11 10 9 22 22 C 1.38101 * 119.93230 * 0.02562 * 21 11 10 23 23 N 1.46899 * 109.46913 * 119.99425 * 2 1 3 24 24 C 1.46957 * 110.99829 * 58.80314 * 23 2 1 25 25 C 1.53055 * 109.36145 * 176.80811 * 24 23 2 26 26 N 1.46955 * 109.36640 * 58.40272 * 25 24 23 27 27 C 1.46891 * 111.00176 * 176.80871 * 26 25 24 28 28 C 1.46957 * 110.87622 * 300.67827 * 26 25 24 29 29 C 1.46959 * 111.00208 * 294.99953 * 23 2 1 30 30 H 1.08992 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46856 * 300.00456 * 1 2 3 32 32 H 1.09001 * 109.46924 * 59.99842 * 1 2 3 33 33 H 0.97000 * 120.00448 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46848 * 59.99850 * 7 6 4 35 35 H 1.09001 * 109.46885 * 300.00464 * 7 6 4 36 36 H 1.08005 * 119.96050 * 359.97425 * 9 8 7 37 37 H 1.07999 * 120.03730 * 180.26989 * 10 9 8 38 38 H 0.96996 * 120.00604 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.03853 * 179.97438 * 21 11 10 40 40 H 1.07997 * 119.96732 * 179.97438 * 22 21 11 41 41 H 1.08999 * 109.48983 * 296.77451 * 24 23 2 42 42 H 1.08998 * 109.48672 * 56.84567 * 24 23 2 43 43 H 1.09000 * 109.49007 * 298.43142 * 25 24 23 44 44 H 1.08999 * 109.50068 * 178.38182 * 25 24 23 45 45 H 1.09004 * 109.47305 * 183.79880 * 27 26 25 46 46 H 1.09001 * 109.47155 * 303.79887 * 27 26 25 47 47 H 1.08998 * 109.47367 * 63.79533 * 27 26 25 48 48 H 1.08998 * 109.49009 * 299.34661 * 28 26 25 49 49 H 1.09000 * 109.50507 * 179.29842 * 28 26 25 50 50 H 1.08999 * 109.49121 * 303.15467 * 29 23 2 51 51 H 1.09003 * 109.48622 * 63.22735 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6930 -0.2303 -4.8812 9 6 0.4868 -0.5998 -5.4480 10 6 0.0216 0.0533 -6.5723 11 6 0.7721 1.0744 -7.1406 12 8 0.3204 1.7141 -8.2496 13 6 1.0393 2.7691 -8.6830 14 1 1.9732 3.0204 -8.2023 15 6 0.5795 3.5317 -9.7458 16 7 1.2807 4.5615 -10.1685 17 14 -1.0356 3.0969 -10.5776 18 1 -2.1479 3.8144 -9.9045 19 1 -0.9803 3.4983 -12.0063 20 1 -1.2624 1.6323 -10.4833 21 6 1.9855 1.4395 -6.5724 22 6 2.4427 0.7862 -5.4448 23 7 2.0197 -0.6924 1.1995 24 6 1.5252 -2.0754 1.2480 25 6 2.1202 -2.7846 2.4668 26 7 1.7490 -2.0527 3.6858 27 6 2.2387 -2.7451 4.8852 28 6 2.2435 -0.6697 3.6373 29 6 1.6486 0.0397 2.4186 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1494 0.5388 -2.5436 34 1 1.8310 -1.9685 -3.6504 35 1 3.2847 -0.9414 -3.6508 36 1 -0.0938 -1.3975 -5.0084 37 1 -0.9224 -0.2328 -7.0119 38 1 0.9593 5.0948 -10.9122 39 1 2.5715 2.2329 -7.0123 40 1 3.3864 1.0694 -5.0027 41 1 0.4379 -2.0704 1.3250 42 1 1.8234 -2.6002 0.3404 43 1 3.2060 -2.8137 2.3764 44 1 1.7324 -3.8019 2.5211 45 1 1.8930 -2.2189 5.7751 46 1 1.8579 -3.7663 4.8961 47 1 3.3284 -2.7638 4.8746 48 1 3.3308 -0.6747 3.5603 49 1 1.9457 -0.1446 4.5449 50 1 2.0367 1.0568 2.3644 51 1 0.5627 0.0687 2.5089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263941529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:36 Heat of formation + Delta-G solvation = -14.401558 kcal Electronic energy + Delta-G solvation = -29949.906960 eV Core-core repulsion = 25850.435681 eV Total energy + Delta-G solvation = -4099.471278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.58816 -39.41361 -38.82217 -37.09559 -35.98415 -34.53567 -32.51648 -31.66760 -31.18633 -30.40815 -29.86233 -27.72224 -26.29648 -25.17150 -24.35037 -23.95504 -22.89741 -22.20934 -20.64612 -20.43766 -19.57697 -18.01527 -17.54317 -17.12706 -16.81500 -15.80606 -15.59151 -15.38268 -15.22713 -15.08725 -14.94067 -14.69626 -14.41532 -14.15066 -14.02210 -13.93481 -13.73981 -13.43152 -13.08812 -12.90436 -12.84642 -12.76090 -12.54304 -12.30196 -12.20014 -12.06888 -11.99673 -11.79921 -11.50934 -11.33992 -11.13373 -11.00494 -10.97733 -10.86795 -10.79232 -10.24629 -9.66886 -9.50776 -9.00683 -8.97104 -8.74448 -8.47879 -8.40878 -7.50393 -6.51964 -4.19064 1.91946 1.99860 2.60498 3.09769 3.16233 3.19281 3.33046 3.59913 3.71733 4.14730 4.35332 4.50536 4.57452 4.71172 4.72316 4.74432 4.85557 4.90009 4.97176 4.99878 5.05497 5.11798 5.18486 5.22068 5.27520 5.28221 5.33370 5.46303 5.49128 5.50206 5.53448 5.61185 5.67156 5.69980 5.82482 5.87561 5.88406 6.00479 6.22062 6.42137 6.48072 6.55473 6.62615 6.65059 6.78177 6.85133 6.87709 7.09767 7.16244 7.47076 7.55325 7.68503 7.92004 8.23179 8.82489 9.42962 10.55110 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001678 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.887045 B =16681.985587 C =16812.917607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.064 3.936 3 H 0.108 0.892 4 C 0.517 3.483 5 O -0.530 6.530 6 N -0.721 5.721 7 C 0.179 3.821 8 C -0.206 4.206 9 C -0.056 4.056 10 C -0.195 4.195 11 C 0.166 3.834 12 O -0.213 6.213 13 C -0.392 4.392 14 H 0.108 0.892 15 C 0.065 3.935 16 N -0.875 5.875 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.224 4.224 22 C -0.052 4.052 23 N -0.516 5.516 24 C 0.043 3.957 25 C 0.060 3.940 26 N -0.547 5.547 27 C 0.025 3.975 28 C 0.058 3.942 29 C 0.054 3.946 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.039 0.961 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.025 0.975 48 H 0.043 0.957 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -10.125 25.416 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.048 4.048 3 H 0.126 0.874 4 C 0.302 3.698 5 O -0.406 6.406 6 N -0.373 5.373 7 C 0.057 3.943 8 C -0.208 4.208 9 C -0.075 4.075 10 C -0.214 4.214 11 C 0.113 3.887 12 O -0.117 6.117 13 C -0.467 4.467 14 H 0.125 0.875 15 C -0.139 4.139 16 N -0.512 5.512 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.243 4.243 22 C -0.071 4.071 23 N -0.240 5.240 24 C -0.084 4.084 25 C -0.068 4.068 26 N -0.272 5.272 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.074 4.074 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.126 0.874 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.611 -10.696 25.160 27.347 hybrid contribution -0.754 0.555 -0.526 1.074 sum -1.365 -10.141 24.635 26.675 Atomic orbital electron populations 1.22417 0.95168 1.03336 1.03435 1.21641 0.94305 0.99126 0.89750 0.87389 1.20371 0.80346 0.84757 0.84326 1.90622 1.37450 1.26194 1.86359 1.46317 1.53486 1.32217 1.05316 1.19982 0.98533 0.94831 0.80966 1.19281 0.98413 1.02985 1.00074 1.20529 0.94655 0.97790 0.94551 1.20212 1.01563 1.00236 0.99434 1.19184 0.91990 0.91525 0.85977 1.83575 1.50375 1.41359 1.36373 1.20787 1.05495 1.03708 1.16754 0.87489 1.24488 0.99109 0.94290 0.96026 1.69640 1.38546 1.16335 1.26651 0.86176 0.82240 0.80193 0.78279 1.19814 1.20666 1.18329 1.21283 0.98369 1.05073 0.99582 1.20708 0.98008 0.93860 0.94523 1.62083 1.59112 1.02412 1.00434 1.22516 0.97288 0.88981 0.99633 1.22153 0.99004 0.97017 0.88670 1.62197 1.59738 1.02553 1.02756 1.22335 0.97835 0.99388 0.92738 1.22140 0.98037 0.89116 0.97734 1.22219 0.99026 0.97261 0.88909 0.91572 0.91221 0.91097 0.76436 0.91524 0.91437 0.86810 0.86380 0.90891 0.84786 0.87082 0.94258 0.87407 0.93830 0.90470 0.91449 0.91395 0.95592 0.93909 0.90338 0.90192 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.39 37.16 0.31 -1.11 16 2 C 0.06 0.59 2.77 -68.86 -0.19 0.40 16 3 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 4 C 0.52 6.19 6.85 -10.99 -0.08 6.11 16 5 O -0.53 -8.11 13.93 5.56 0.08 -8.04 16 6 N -0.72 -8.11 5.44 -61.47 -0.33 -8.45 16 7 C 0.18 2.30 5.80 -5.19 -0.03 2.27 16 8 C -0.21 -3.05 5.25 -104.57 -0.55 -3.60 16 9 C -0.06 -0.86 9.69 -39.61 -0.38 -1.24 16 10 C -0.20 -3.56 9.99 -39.40 -0.39 -3.95 16 11 C 0.17 3.60 6.65 -39.11 -0.26 3.34 16 12 O -0.21 -5.35 8.59 0.05 0.00 -5.35 16 13 C -0.39 -10.62 9.95 30.89 0.31 -10.31 16 14 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 15 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 16 N -0.87 -24.48 13.96 55.48 0.77 -23.71 16 17 Si 0.91 20.93 28.62 -169.99 -4.86 16.07 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 21 C -0.22 -4.49 9.17 -39.40 -0.36 -4.85 16 22 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 23 N -0.52 -5.20 4.49 -227.87 -1.02 -6.22 16 24 C 0.04 0.45 4.70 -3.76 -0.02 0.43 16 25 C 0.06 0.57 5.62 -3.77 -0.02 0.54 16 26 N -0.55 -4.75 4.97 -242.76 -1.21 -5.95 16 27 C 0.03 0.17 9.60 60.06 0.58 0.75 16 28 C 0.06 0.46 5.62 -3.77 -0.02 0.44 16 29 C 0.05 0.44 5.25 -3.77 -0.02 0.42 16 30 H 0.07 0.57 6.46 -51.93 -0.34 0.23 16 31 H 0.07 0.48 6.59 -51.93 -0.34 0.13 16 32 H 0.07 0.49 7.57 -51.93 -0.39 0.10 16 33 H 0.40 3.96 7.88 -40.82 -0.32 3.64 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 38 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.04 0.40 6.47 -51.93 -0.34 0.07 16 42 H 0.11 1.35 5.40 -51.93 -0.28 1.07 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 47 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 51 H 0.05 0.38 6.60 -51.93 -0.34 0.03 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -29.94 401.67 -10.11 -40.05 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.98 Total: 5.48 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.61 Total: -9.93 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -1.79 Total: -44.33 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.94 -10.11 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263941529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.645 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds