Wall clock time and date at job start Wed Apr 1 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46927 * 2 1 4 4 C 1.50699 * 109.47286 * 239.99978 * 2 1 3 5 5 O 1.21282 * 119.99760 * 239.99979 * 4 2 1 6 6 N 1.34768 * 120.00150 * 59.99606 * 4 2 1 7 7 C 1.46503 * 120.00179 * 180.02562 * 6 4 2 8 8 C 1.50701 * 109.47448 * 180.02562 * 7 6 4 9 9 C 1.38299 * 119.93217 * 269.73027 * 8 7 6 10 10 C 1.38093 * 120.06953 * 179.72477 * 9 8 7 11 11 C 1.38883 * 119.92808 * 0.56550 * 10 9 8 12 12 O 1.35754 * 120.06438 * 179.68623 * 11 10 9 13 13 C 1.34826 * 116.99724 * 174.49160 * 12 11 10 14 14 H 1.07998 * 120.00100 * 5.04739 * 13 12 11 15 15 C 1.38654 * 119.99970 * 185.05457 * 13 12 11 16 16 N 1.31562 * 120.00282 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00220 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47275 * 89.99838 * 17 15 13 19 19 H 1.48495 * 109.47094 * 210.00170 * 17 15 13 20 20 H 1.48506 * 109.46791 * 330.00186 * 17 15 13 21 21 C 1.38871 * 119.86468 * 359.70509 * 11 10 9 22 22 C 1.38101 * 119.93230 * 0.02562 * 21 11 10 23 23 N 1.46899 * 109.46913 * 119.99425 * 2 1 3 24 24 C 1.46957 * 110.99829 * 58.80314 * 23 2 1 25 25 C 1.53055 * 109.36145 * 176.80811 * 24 23 2 26 26 N 1.46955 * 109.36640 * 58.40272 * 25 24 23 27 27 C 1.46891 * 111.00176 * 176.80871 * 26 25 24 28 28 C 1.46957 * 110.87622 * 300.67827 * 26 25 24 29 29 C 1.46959 * 111.00208 * 294.99953 * 23 2 1 30 30 H 1.08992 * 109.46924 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46856 * 300.00456 * 1 2 3 32 32 H 1.09001 * 109.46924 * 59.99842 * 1 2 3 33 33 H 0.97000 * 120.00448 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.46848 * 59.99850 * 7 6 4 35 35 H 1.09001 * 109.46885 * 300.00464 * 7 6 4 36 36 H 1.08005 * 119.96050 * 359.97425 * 9 8 7 37 37 H 1.07999 * 120.03730 * 180.26989 * 10 9 8 38 38 H 0.96996 * 120.00604 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.03853 * 179.97438 * 21 11 10 40 40 H 1.07997 * 119.96732 * 179.97438 * 22 21 11 41 41 H 1.08999 * 109.48983 * 296.77451 * 24 23 2 42 42 H 1.08998 * 109.48672 * 56.84567 * 24 23 2 43 43 H 1.09000 * 109.49007 * 298.43142 * 25 24 23 44 44 H 1.08999 * 109.50068 * 178.38182 * 25 24 23 45 45 H 1.09004 * 109.47305 * 183.79880 * 27 26 25 46 46 H 1.09001 * 109.47155 * 303.79887 * 27 26 25 47 47 H 1.08998 * 109.47367 * 63.79533 * 27 26 25 48 48 H 1.08998 * 109.49009 * 299.34661 * 28 26 25 49 49 H 1.09000 * 109.50507 * 179.29842 * 28 26 25 50 50 H 1.08999 * 109.49121 * 303.15467 * 29 23 2 51 51 H 1.09003 * 109.48622 * 63.22735 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.6930 -0.2303 -4.8812 9 6 0.4868 -0.5998 -5.4480 10 6 0.0216 0.0533 -6.5723 11 6 0.7721 1.0744 -7.1406 12 8 0.3204 1.7141 -8.2496 13 6 1.0393 2.7691 -8.6830 14 1 1.9732 3.0204 -8.2023 15 6 0.5795 3.5317 -9.7458 16 7 1.2807 4.5615 -10.1685 17 14 -1.0356 3.0969 -10.5776 18 1 -2.1479 3.8144 -9.9045 19 1 -0.9803 3.4983 -12.0063 20 1 -1.2624 1.6323 -10.4833 21 6 1.9855 1.4395 -6.5724 22 6 2.4427 0.7862 -5.4448 23 7 2.0197 -0.6924 1.1995 24 6 1.5252 -2.0754 1.2480 25 6 2.1202 -2.7846 2.4668 26 7 1.7490 -2.0527 3.6858 27 6 2.2387 -2.7451 4.8852 28 6 2.2435 -0.6697 3.6373 29 6 1.6486 0.0397 2.4186 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1494 0.5388 -2.5436 34 1 1.8310 -1.9685 -3.6504 35 1 3.2847 -0.9414 -3.6508 36 1 -0.0938 -1.3975 -5.0084 37 1 -0.9224 -0.2328 -7.0119 38 1 0.9593 5.0948 -10.9122 39 1 2.5715 2.2329 -7.0123 40 1 3.3864 1.0694 -5.0027 41 1 0.4379 -2.0704 1.3250 42 1 1.8234 -2.6002 0.3404 43 1 3.2060 -2.8137 2.3764 44 1 1.7324 -3.8019 2.5211 45 1 1.8930 -2.2189 5.7751 46 1 1.8579 -3.7663 4.8961 47 1 3.3284 -2.7638 4.8746 48 1 3.3308 -0.6747 3.5603 49 1 1.9457 -0.1446 4.5449 50 1 2.0367 1.0568 2.3644 51 1 0.5627 0.0687 2.5089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263941529.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:35 Heat of formation + Delta-G solvation = -35.985164 kcal Electronic energy + Delta-G solvation = -29950.842895 eV Core-core repulsion = 25850.435681 eV Total energy + Delta-G solvation = -4100.407214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46604 -40.90946 -39.73253 -38.58300 -36.73445 -35.67753 -34.44922 -32.53736 -31.88642 -31.85753 -31.07132 -28.37527 -27.80190 -26.46817 -25.30629 -24.65655 -23.74927 -23.66312 -22.06827 -21.32709 -20.33746 -19.83760 -19.14634 -18.14897 -17.64129 -16.79910 -16.67411 -16.30583 -16.25393 -16.06188 -15.92877 -15.72442 -15.63241 -15.53356 -15.44590 -15.00057 -14.70333 -14.59145 -14.37170 -14.29274 -14.06951 -13.65875 -13.52920 -13.39855 -13.19869 -13.10207 -12.71885 -12.66049 -12.57514 -12.55607 -12.46294 -12.32348 -12.04391 -11.94249 -11.81370 -11.68683 -11.30451 -10.93422 -10.60965 -10.01987 -9.83597 -9.42027 -9.20269 -9.07981 -8.50816 -6.23915 0.48847 0.54394 1.32534 1.35566 1.52171 1.67594 2.16860 2.27420 2.76534 2.93857 3.00256 3.06469 3.15065 3.73847 3.84926 3.88575 4.00881 4.06885 4.11348 4.13842 4.16034 4.25576 4.31436 4.39037 4.43920 4.54142 4.59189 4.61904 4.67393 4.67877 4.74202 4.81427 4.82953 4.87419 4.94863 4.96392 4.99139 5.01300 5.07938 5.21949 5.23475 5.33656 5.48469 5.54087 5.70741 5.78639 5.87961 5.88234 5.95419 6.13243 6.15897 6.19024 6.63274 6.83309 7.30478 7.56206 8.60353 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001678 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.887045 B =16681.985587 C =16812.917607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 H 0.125 0.875 4 C 0.517 3.483 5 O -0.564 6.564 6 N -0.714 5.714 7 C 0.185 3.815 8 C -0.172 4.172 9 C -0.045 4.045 10 C -0.191 4.191 11 C 0.129 3.871 12 O -0.242 6.242 13 C -0.400 4.400 14 H 0.083 0.917 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.262 1.262 21 C -0.238 4.238 22 C -0.051 4.051 23 N -0.533 5.533 24 C 0.050 3.950 25 C 0.063 3.937 26 N -0.554 5.554 27 C 0.025 3.975 28 C 0.057 3.943 29 C 0.055 3.945 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.285 0.715 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.022 0.978 48 H 0.030 0.970 49 H 0.097 0.903 50 H 0.094 0.906 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -11.512 28.080 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.044 4.044 3 H 0.142 0.858 4 C 0.304 3.696 5 O -0.443 6.443 6 N -0.366 5.366 7 C 0.062 3.938 8 C -0.174 4.174 9 C -0.063 4.063 10 C -0.211 4.211 11 C 0.079 3.921 12 O -0.149 6.149 13 C -0.476 4.476 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.194 1.194 20 H -0.187 1.187 21 C -0.257 4.257 22 C -0.069 4.069 23 N -0.257 5.257 24 C -0.078 4.078 25 C -0.065 4.065 26 N -0.279 5.279 27 C -0.123 4.123 28 C -0.071 4.071 29 C -0.072 4.072 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.171 0.829 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.041 0.959 48 H 0.049 0.951 49 H 0.115 0.885 50 H 0.112 0.888 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.169 -12.094 27.873 30.461 hybrid contribution -0.132 0.758 -0.994 1.257 sum -2.301 -11.336 26.879 29.263 Atomic orbital electron populations 1.22361 0.93640 1.03021 1.04558 1.21667 0.95362 0.99218 0.88164 0.85753 1.20847 0.79556 0.84244 0.84991 1.90624 1.39049 1.27820 1.86831 1.46137 1.53433 1.32352 1.04718 1.19871 0.98500 0.95028 0.80433 1.19541 0.97316 1.00802 0.99692 1.20940 0.94665 0.97693 0.93005 1.20519 1.01719 0.98974 0.99841 1.19745 0.93296 0.92816 0.86251 1.83523 1.50870 1.41815 1.38721 1.20707 1.05117 1.04769 1.17038 0.89977 1.25279 1.02467 0.94276 0.96732 1.69726 1.40516 1.17904 1.27989 0.85224 0.78277 0.79535 0.77739 1.18977 1.19419 1.18651 1.21265 0.98191 1.05299 1.00985 1.20918 0.99009 0.93740 0.93242 1.62066 1.59758 1.02474 1.01437 1.22345 0.97246 0.89305 0.98865 1.22084 0.97794 0.97547 0.89096 1.62239 1.59863 1.02964 1.02837 1.22386 0.97686 0.99785 0.92416 1.22204 0.97302 0.88993 0.98603 1.22283 0.99332 0.97666 0.87955 0.92550 0.90000 0.90084 0.75315 0.90622 0.91633 0.82857 0.85110 0.90555 0.87330 0.84931 0.94082 0.89730 0.95622 0.89796 0.90143 0.90859 0.95890 0.95135 0.88511 0.88769 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.39 71.98 0.60 -1.56 16 2 C 0.07 1.08 2.77 44.17 0.12 1.20 16 3 H 0.12 1.60 8.11 -2.39 -0.02 1.58 16 4 C 0.52 11.16 6.85 87.66 0.60 11.76 16 5 O -0.56 -16.49 13.93 -3.04 -0.04 -16.53 16 6 N -0.71 -13.73 5.44 -466.79 -2.54 -16.27 16 7 C 0.18 4.10 5.80 85.63 0.50 4.60 16 8 C -0.17 -4.53 5.25 -19.83 -0.10 -4.64 16 9 C -0.04 -1.19 9.69 22.25 0.22 -0.98 16 10 C -0.19 -6.61 9.99 22.39 0.22 -6.38 16 11 C 0.13 5.62 6.65 22.58 0.15 5.77 16 12 O -0.24 -12.60 8.59 -22.74 -0.20 -12.80 16 13 C -0.40 -22.83 9.95 67.92 0.68 -22.16 16 14 H 0.08 4.91 5.44 -2.91 -0.02 4.90 16 15 C 0.01 0.63 5.49 84.83 0.47 1.10 16 16 N -0.92 -53.84 13.96 21.61 0.30 -53.54 16 17 Si 0.97 44.14 28.62 68.60 1.96 46.10 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 21 C -0.24 -9.75 9.17 22.39 0.21 -9.54 16 22 C -0.05 -1.58 9.69 22.25 0.22 -1.37 16 23 N -0.53 -9.74 4.49 -874.85 -3.92 -13.67 16 24 C 0.05 0.99 4.70 86.31 0.41 1.39 16 25 C 0.06 1.14 5.62 86.31 0.49 1.63 16 26 N -0.55 -8.67 4.97 -921.96 -4.58 -13.25 16 27 C 0.03 0.30 9.60 127.69 1.23 1.52 16 28 C 0.06 0.79 5.62 86.31 0.49 1.28 16 29 C 0.06 0.75 5.25 86.31 0.45 1.21 16 30 H 0.06 0.82 6.46 -2.39 -0.02 0.81 16 31 H 0.08 0.83 6.59 -2.39 -0.02 0.82 16 32 H 0.08 0.83 7.57 -2.39 -0.02 0.81 16 33 H 0.41 6.57 7.88 -92.71 -0.73 5.84 16 34 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.11 4.98 5.64 -2.91 -0.02 4.96 16 40 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.04 0.78 6.47 -2.39 -0.02 0.76 16 42 H 0.08 2.08 5.40 -2.39 -0.01 2.07 16 43 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 1.35 8.13 -2.39 -0.02 1.33 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 47 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 51 H 0.05 0.67 6.60 -2.39 -0.02 0.65 16 Total: -1.00 -68.50 401.67 -1.88 -70.38 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.21 Total: 24.74 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 6.93 Total: -15.17 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -10.74 Total: -96.73 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.24 Total: -29.33 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.96 Total: 46.10 kcal Total: -68.50 -1.88 -70.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263941529.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.395 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds