Wall clock time and date at job start Wed Apr 1 2020 05:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47648 * 2 1 4 4 C 1.50706 * 109.46839 * 239.99957 * 2 1 3 5 5 O 1.21277 * 119.99953 * 251.17992 * 4 2 1 6 6 N 1.34777 * 119.99854 * 71.17746 * 4 2 1 7 7 C 1.46507 * 120.00082 * 4.97634 * 6 4 2 8 8 C 1.46494 * 120.00201 * 184.97886 * 6 4 2 9 9 C 1.50697 * 109.47284 * 89.99642 * 8 6 4 10 10 H 1.08004 * 120.00249 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00152 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00118 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00125 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47126 * 90.00498 * 13 11 9 15 15 H 1.48498 * 109.47386 * 210.00259 * 13 11 9 16 16 H 1.48497 * 109.47190 * 330.00440 * 13 11 9 17 17 N 1.46902 * 109.47128 * 120.00260 * 2 1 3 18 18 C 1.46960 * 110.99946 * 294.99458 * 17 2 1 19 19 C 1.53049 * 109.36374 * 183.18737 * 18 17 2 20 20 N 1.46953 * 109.36639 * 301.60205 * 19 18 17 21 21 C 1.39670 * 111.00015 * 183.18569 * 20 19 18 22 22 C 1.38977 * 120.04566 * 0.02562 * 21 20 19 23 23 C 1.38106 * 120.03212 * 179.97438 * 22 21 20 24 24 C 1.38221 * 120.13251 * 359.97438 * 23 22 21 25 25 C 1.38770 * 120.09241 * 0.02562 * 24 23 22 26 26 O 1.35891 * 120.01937 * 180.02562 * 25 24 23 27 27 C 1.38617 * 119.96077 * 359.72140 * 25 24 23 28 28 C 1.46960 * 110.88245 * 59.31894 * 20 19 18 29 29 C 1.46953 * 111.00085 * 58.79699 * 17 2 1 30 30 H 1.09004 * 109.46441 * 308.10040 * 1 2 3 31 31 H 1.08995 * 109.46992 * 68.09785 * 1 2 3 32 32 H 1.09003 * 109.47247 * 188.10718 * 1 2 3 33 33 H 1.09002 * 109.46987 * 94.24328 * 7 6 4 34 34 H 1.08996 * 109.46996 * 214.24337 * 7 6 4 35 35 H 1.08996 * 109.46839 * 334.24439 * 7 6 4 36 36 H 1.08997 * 109.47578 * 210.00003 * 8 6 4 37 37 H 1.09004 * 109.47106 * 329.99827 * 8 6 4 38 38 H 0.97001 * 120.00777 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.48404 * 63.22036 * 18 17 2 40 40 H 1.09002 * 109.50819 * 303.16959 * 18 17 2 41 41 H 1.08992 * 109.48925 * 181.62949 * 19 18 17 42 42 H 1.09003 * 109.50449 * 61.57804 * 19 18 17 43 43 H 1.07992 * 119.98091 * 359.97438 * 22 21 20 44 44 H 1.08006 * 119.93635 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.95271 * 180.02562 * 24 23 22 46 46 H 0.96693 * 114.00730 * 90.00086 * 26 25 24 47 47 H 1.07997 * 120.06195 * 180.28885 * 27 25 24 48 48 H 1.09003 * 109.49049 * 60.64672 * 28 20 19 49 49 H 1.08997 * 109.49111 * 180.71313 * 28 20 19 50 50 H 1.09000 * 109.48906 * 296.78084 * 29 17 2 51 51 H 1.09000 * 109.49150 * 56.84424 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5538 -1.8008 -1.1308 6 7 1.9018 -0.1341 -2.4418 7 6 1.3720 1.2274 -2.5520 8 6 2.2897 -0.8690 -3.6483 9 6 1.1052 -1.6422 -4.1681 10 1 0.1581 -1.5910 -3.6516 11 6 1.2306 -2.4151 -5.3030 12 7 2.3840 -2.4779 -5.9316 13 14 -0.2374 -3.3742 -5.9468 14 1 -0.9972 -2.5319 -6.9052 15 1 0.2365 -4.6019 -6.6347 16 1 -1.1185 -3.7511 -4.8125 17 7 2.0197 -0.6926 1.1994 18 6 1.6487 0.0394 2.4186 19 6 2.2436 -0.6700 3.6372 20 7 1.7491 -2.0530 3.6856 21 6 2.2147 -2.7114 4.8260 22 6 3.0338 -2.0443 5.7290 23 6 3.4937 -2.6955 6.8567 24 6 3.1405 -4.0112 7.0908 25 6 2.3228 -4.6824 6.1927 26 8 1.9761 -5.9757 6.4245 27 6 1.8548 -4.0309 5.0622 28 6 2.1201 -2.7849 2.4665 29 6 1.5251 -2.0755 1.2478 30 1 -0.3632 0.6342 0.8088 31 1 -0.3633 0.3833 -0.9534 32 1 -0.3634 -1.0174 0.1449 33 1 2.1984 1.9377 -2.5785 34 1 0.7869 1.3165 -3.4673 35 1 0.7368 1.4407 -1.6924 36 1 2.6268 -0.1656 -4.4096 37 1 3.0979 -1.5600 -3.4087 38 1 2.4723 -3.0213 -6.7303 39 1 0.5628 0.0685 2.5089 40 1 2.0365 1.0567 2.3646 41 1 1.9456 -0.1452 4.5448 42 1 3.3309 -0.6751 3.5605 43 1 3.3109 -1.0162 5.5487 44 1 4.1298 -2.1755 7.5577 45 1 3.5014 -4.5175 7.9738 46 1 1.1631 -6.0791 6.9377 47 1 1.2146 -4.5503 4.3645 48 1 3.2059 -2.8141 2.3761 49 1 1.7319 -3.8020 2.5206 50 1 0.4379 -2.0704 1.3249 51 1 1.8232 -2.6003 0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265975452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:15 Heat of formation + Delta-G solvation = -9.038917 kcal Electronic energy + Delta-G solvation = -31204.149643 eV Core-core repulsion = 27104.910906 eV Total energy + Delta-G solvation = -4099.238737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77265 -39.77491 -38.54458 -36.97129 -35.28432 -34.85645 -32.72201 -31.63457 -31.19551 -30.04445 -28.95642 -27.67204 -26.32520 -25.75169 -24.34579 -23.93344 -22.36435 -22.10115 -21.55075 -19.68064 -18.67850 -18.32846 -16.99410 -16.58755 -16.53617 -16.09836 -15.86793 -15.83239 -15.06833 -14.97168 -14.74024 -14.68514 -14.43317 -14.25788 -14.03017 -13.86377 -13.73908 -13.18644 -12.82401 -12.51088 -12.38736 -12.32496 -12.23878 -12.04571 -12.04099 -11.68055 -11.56758 -11.43156 -11.18924 -11.18066 -10.96078 -10.84165 -10.80493 -10.63580 -10.56848 -10.14283 -9.88199 -9.64391 -8.94972 -8.75219 -8.45657 -8.12444 -8.00453 -7.64326 -6.06225 -4.11477 1.02629 1.13843 3.27887 3.30860 3.34387 3.36345 3.40952 3.53501 3.63695 4.10327 4.19823 4.42331 4.58618 4.72253 4.87951 4.90437 4.96394 5.03932 5.07846 5.17783 5.19465 5.23143 5.28313 5.32107 5.38801 5.41713 5.52810 5.56471 5.59652 5.65184 5.73430 5.76227 5.83727 5.91355 5.96999 6.00305 6.14490 6.16850 6.22854 6.29216 6.36693 6.40904 6.78728 6.94170 7.04846 7.14896 7.19724 7.41971 7.45523 7.53876 7.90314 8.21170 8.40832 8.88124 9.08984 9.53850 11.01720 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002402 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.713552 B =11656.152283 C =12830.917225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.065 3.935 3 H 0.099 0.901 4 C 0.516 3.484 5 O -0.528 6.528 6 N -0.600 5.600 7 C 0.075 3.925 8 C 0.245 3.755 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.516 5.516 18 C 0.052 3.948 19 C 0.056 3.944 20 N -0.492 5.492 21 C 0.136 3.864 22 C -0.182 4.182 23 C -0.077 4.077 24 C -0.178 4.178 25 C 0.129 3.871 26 O -0.500 6.500 27 C -0.168 4.168 28 C 0.065 3.935 29 C 0.032 3.968 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.390 0.610 47 H 0.131 0.869 48 H 0.055 0.945 49 H 0.084 0.916 50 H 0.039 0.961 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.405 5.689 24.588 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.048 4.048 3 H 0.117 0.883 4 C 0.302 3.698 5 O -0.405 6.405 6 N -0.332 5.332 7 C -0.069 4.069 8 C 0.126 3.874 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.240 5.240 18 C -0.076 4.076 19 C -0.071 4.071 20 N -0.207 5.207 21 C 0.038 3.962 22 C -0.203 4.203 23 C -0.096 4.096 24 C -0.198 4.198 25 C 0.084 3.916 26 O -0.310 6.310 27 C -0.189 4.189 28 C -0.059 4.059 29 C -0.095 4.095 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.246 0.754 47 H 0.149 0.851 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.057 0.943 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.534 4.936 24.023 24.573 hybrid contribution -1.475 -0.295 -0.155 1.512 sum -3.009 4.640 23.868 24.501 Atomic orbital electron populations 1.22476 0.95530 1.03323 1.03123 1.21648 0.94160 0.98702 0.90240 0.88284 1.20015 0.79686 0.86173 0.83969 1.90497 1.43784 1.21044 1.85181 1.48095 1.62563 1.15012 1.07576 1.21817 0.98441 0.83904 1.02752 1.19286 0.96637 0.91668 0.79781 1.21412 0.96882 1.28173 1.10106 0.92550 1.24934 0.96062 0.96475 0.96603 1.69928 1.23678 1.40408 1.19216 0.86514 0.82546 0.79559 0.78899 1.20657 1.21062 1.19919 1.62125 1.59108 1.02418 1.00377 1.22219 0.98918 0.97359 0.89104 1.22333 0.98821 0.87592 0.98368 1.59267 1.56257 1.03342 1.01876 1.18830 0.92403 0.92412 0.92592 1.21350 1.00228 1.01531 0.97189 1.20854 0.98189 0.93954 0.96610 1.21300 1.02807 0.95102 1.00546 1.18259 0.96495 0.83306 0.93568 1.84818 1.47276 1.21994 1.76906 1.21039 1.04102 0.93940 0.99847 1.22356 0.99907 0.97039 0.86642 1.22850 0.97255 0.89273 1.00159 0.91950 0.90602 0.91405 0.93643 0.90892 0.91827 0.95059 0.93659 0.92683 0.93643 0.90030 0.89774 0.92536 0.85261 0.85665 0.85741 0.75387 0.85122 0.92654 0.89806 0.94281 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.03 37.16 0.30 -2.12 16 2 C 0.06 0.95 1.92 -68.86 -0.13 0.82 16 3 H 0.10 1.26 7.41 -51.93 -0.38 0.87 16 4 C 0.52 10.39 6.80 -10.98 -0.07 10.31 16 5 O -0.53 -12.70 13.06 5.56 0.07 -12.63 16 6 N -0.60 -12.40 2.86 -182.96 -0.52 -12.92 16 7 C 0.07 1.14 9.80 59.85 0.59 1.73 16 8 C 0.25 6.34 5.22 -5.20 -0.03 6.31 16 9 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 13 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 N -0.52 -7.42 4.57 -227.87 -1.04 -8.46 16 18 C 0.05 0.57 5.25 -3.77 -0.02 0.55 16 19 C 0.06 0.58 4.29 -3.77 -0.02 0.57 16 20 N -0.49 -5.88 4.75 -170.98 -0.81 -6.69 16 21 C 0.14 1.56 5.63 -83.81 -0.47 1.09 16 22 C -0.18 -1.80 8.81 -39.36 -0.35 -2.15 16 23 C -0.08 -0.69 10.03 -39.64 -0.40 -1.08 16 24 C -0.18 -1.67 9.98 -39.39 -0.39 -2.07 16 25 C 0.13 1.35 6.70 -39.24 -0.26 1.09 16 26 O -0.50 -4.72 13.50 -19.40 -0.26 -4.98 16 27 C -0.17 -1.92 9.13 -39.24 -0.36 -2.28 16 28 C 0.07 0.89 5.38 -3.77 -0.02 0.87 16 29 C 0.03 0.49 4.74 -3.77 -0.02 0.47 16 30 H 0.06 0.66 7.01 -51.93 -0.36 0.29 16 31 H 0.08 1.00 5.99 -51.93 -0.31 0.69 16 32 H 0.07 0.99 6.04 -51.93 -0.31 0.67 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.06 0.78 4.44 -51.93 -0.23 0.55 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.05 1.33 7.36 -51.93 -0.38 0.94 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 0.50 6.78 -51.93 -0.35 0.14 16 40 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.08 0.71 7.17 -51.93 -0.37 0.34 16 42 H 0.06 0.62 7.58 -51.93 -0.39 0.22 16 43 H 0.13 1.09 5.80 -52.49 -0.30 0.78 16 44 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.39 1.72 9.06 45.56 0.41 2.14 16 47 H 0.13 1.48 7.20 -52.49 -0.38 1.10 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.08 1.08 6.83 -51.93 -0.35 0.73 16 50 H 0.04 0.59 6.29 -51.93 -0.33 0.26 16 51 H 0.13 2.53 5.02 -51.93 -0.26 2.26 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -33.88 392.26 -9.83 -43.71 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.81 Total: 4.35 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.07 Total: 0.77 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -1.64 Total: -53.75 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.19 Total: -17.60 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.88 -9.83 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265975452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.667 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds