Wall clock time and date at job start Wed Apr 1 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47648 * 2 1 4 4 C 1.50706 * 109.46839 * 239.99957 * 2 1 3 5 5 O 1.21277 * 119.99953 * 251.17992 * 4 2 1 6 6 N 1.34777 * 119.99854 * 71.17746 * 4 2 1 7 7 C 1.46507 * 120.00082 * 4.97634 * 6 4 2 8 8 C 1.46494 * 120.00201 * 184.97886 * 6 4 2 9 9 C 1.50697 * 109.47284 * 89.99642 * 8 6 4 10 10 H 1.08004 * 120.00249 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00152 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00118 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00125 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47126 * 90.00498 * 13 11 9 15 15 H 1.48498 * 109.47386 * 210.00259 * 13 11 9 16 16 H 1.48497 * 109.47190 * 330.00440 * 13 11 9 17 17 N 1.46902 * 109.47128 * 120.00260 * 2 1 3 18 18 C 1.46960 * 110.99946 * 294.99458 * 17 2 1 19 19 C 1.53049 * 109.36374 * 183.18737 * 18 17 2 20 20 N 1.46953 * 109.36639 * 301.60205 * 19 18 17 21 21 C 1.39670 * 111.00015 * 183.18569 * 20 19 18 22 22 C 1.38977 * 120.04566 * 0.02562 * 21 20 19 23 23 C 1.38106 * 120.03212 * 179.97438 * 22 21 20 24 24 C 1.38221 * 120.13251 * 359.97438 * 23 22 21 25 25 C 1.38770 * 120.09241 * 0.02562 * 24 23 22 26 26 O 1.35891 * 120.01937 * 180.02562 * 25 24 23 27 27 C 1.38617 * 119.96077 * 359.72140 * 25 24 23 28 28 C 1.46960 * 110.88245 * 59.31894 * 20 19 18 29 29 C 1.46953 * 111.00085 * 58.79699 * 17 2 1 30 30 H 1.09004 * 109.46441 * 308.10040 * 1 2 3 31 31 H 1.08995 * 109.46992 * 68.09785 * 1 2 3 32 32 H 1.09003 * 109.47247 * 188.10718 * 1 2 3 33 33 H 1.09002 * 109.46987 * 94.24328 * 7 6 4 34 34 H 1.08996 * 109.46996 * 214.24337 * 7 6 4 35 35 H 1.08996 * 109.46839 * 334.24439 * 7 6 4 36 36 H 1.08997 * 109.47578 * 210.00003 * 8 6 4 37 37 H 1.09004 * 109.47106 * 329.99827 * 8 6 4 38 38 H 0.97001 * 120.00777 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.48404 * 63.22036 * 18 17 2 40 40 H 1.09002 * 109.50819 * 303.16959 * 18 17 2 41 41 H 1.08992 * 109.48925 * 181.62949 * 19 18 17 42 42 H 1.09003 * 109.50449 * 61.57804 * 19 18 17 43 43 H 1.07992 * 119.98091 * 359.97438 * 22 21 20 44 44 H 1.08006 * 119.93635 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.95271 * 180.02562 * 24 23 22 46 46 H 0.96693 * 114.00730 * 90.00086 * 26 25 24 47 47 H 1.07997 * 120.06195 * 180.28885 * 27 25 24 48 48 H 1.09003 * 109.49049 * 60.64672 * 28 20 19 49 49 H 1.08997 * 109.49111 * 180.71313 * 28 20 19 50 50 H 1.09000 * 109.48906 * 296.78084 * 29 17 2 51 51 H 1.09000 * 109.49150 * 56.84424 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.5538 -1.8008 -1.1308 6 7 1.9018 -0.1341 -2.4418 7 6 1.3720 1.2274 -2.5520 8 6 2.2897 -0.8690 -3.6483 9 6 1.1052 -1.6422 -4.1681 10 1 0.1581 -1.5910 -3.6516 11 6 1.2306 -2.4151 -5.3030 12 7 2.3840 -2.4779 -5.9316 13 14 -0.2374 -3.3742 -5.9468 14 1 -0.9972 -2.5319 -6.9052 15 1 0.2365 -4.6019 -6.6347 16 1 -1.1185 -3.7511 -4.8125 17 7 2.0197 -0.6926 1.1994 18 6 1.6487 0.0394 2.4186 19 6 2.2436 -0.6700 3.6372 20 7 1.7491 -2.0530 3.6856 21 6 2.2147 -2.7114 4.8260 22 6 3.0338 -2.0443 5.7290 23 6 3.4937 -2.6955 6.8567 24 6 3.1405 -4.0112 7.0908 25 6 2.3228 -4.6824 6.1927 26 8 1.9761 -5.9757 6.4245 27 6 1.8548 -4.0309 5.0622 28 6 2.1201 -2.7849 2.4665 29 6 1.5251 -2.0755 1.2478 30 1 -0.3632 0.6342 0.8088 31 1 -0.3633 0.3833 -0.9534 32 1 -0.3634 -1.0174 0.1449 33 1 2.1984 1.9377 -2.5785 34 1 0.7869 1.3165 -3.4673 35 1 0.7368 1.4407 -1.6924 36 1 2.6268 -0.1656 -4.4096 37 1 3.0979 -1.5600 -3.4087 38 1 2.4723 -3.0213 -6.7303 39 1 0.5628 0.0685 2.5089 40 1 2.0365 1.0567 2.3646 41 1 1.9456 -0.1452 4.5448 42 1 3.3309 -0.6751 3.5605 43 1 3.3109 -1.0162 5.5487 44 1 4.1298 -2.1755 7.5577 45 1 3.5014 -4.5175 7.9738 46 1 1.1631 -6.0791 6.9377 47 1 1.2146 -4.5503 4.3645 48 1 3.2059 -2.8141 2.3761 49 1 1.7319 -3.8020 2.5206 50 1 0.4379 -2.0704 1.3249 51 1 1.8232 -2.6003 0.3402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265975452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:14 Heat of formation + Delta-G solvation = -35.070516 kcal Electronic energy + Delta-G solvation = -31205.278458 eV Core-core repulsion = 27104.910906 eV Total energy + Delta-G solvation = -4100.367552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76137 -40.95237 -39.58400 -37.95177 -36.60694 -36.18190 -34.75832 -32.61097 -32.28974 -30.92571 -30.00569 -29.35206 -27.58004 -26.95436 -25.67435 -25.18846 -23.77612 -22.93084 -22.54834 -20.71509 -19.95949 -19.30844 -18.67638 -17.93368 -17.84038 -17.23002 -16.93944 -16.69934 -16.56637 -16.20094 -15.90944 -15.88289 -15.63625 -15.47265 -15.06644 -14.96408 -14.67167 -14.48245 -14.12733 -14.00885 -13.61121 -13.45762 -13.33607 -13.21023 -13.15306 -12.99363 -12.89506 -12.74609 -12.62591 -12.47522 -12.37026 -12.20203 -12.14406 -11.85648 -11.78612 -11.67710 -11.52988 -10.74140 -10.64879 -10.24348 -9.70514 -9.39473 -9.23150 -8.86970 -8.22695 -6.37776 0.28066 0.36526 1.35174 1.38221 1.48142 1.83976 2.23343 2.40253 2.51803 2.77104 2.96057 3.06721 3.39031 3.63932 3.72499 3.91556 4.03231 4.06656 4.12246 4.17798 4.20744 4.25050 4.25447 4.36444 4.40136 4.52354 4.54476 4.64753 4.67939 4.71377 4.73795 4.77827 4.88794 4.91140 4.95121 4.96935 5.02084 5.10458 5.23013 5.23590 5.25373 5.41600 5.49368 5.57486 5.65826 5.85042 5.87855 5.94873 6.06106 6.14275 6.26444 6.70614 6.82378 6.84644 7.28720 7.52877 8.84195 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002402 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.713552 B =11656.152283 C =12830.917225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.133 0.867 4 C 0.502 3.498 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.070 3.930 8 C 0.260 3.740 9 C -0.539 4.539 10 H 0.054 0.946 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.272 1.272 17 N -0.531 5.531 18 C 0.053 3.947 19 C 0.055 3.945 20 N -0.493 5.493 21 C 0.117 3.883 22 C -0.184 4.184 23 C -0.074 4.074 24 C -0.180 4.180 25 C 0.121 3.879 26 O -0.513 6.513 27 C -0.188 4.188 28 C 0.077 3.923 29 C 0.042 3.958 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.021 0.979 37 H -0.003 1.003 38 H 0.267 0.733 39 H 0.053 0.947 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.410 0.590 47 H 0.120 0.880 48 H 0.034 0.966 49 H 0.080 0.920 50 H 0.040 0.960 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 7.905 27.169 28.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.034 4.034 3 H 0.150 0.850 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.341 5.341 7 C -0.072 4.072 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.197 1.197 17 N -0.256 5.256 18 C -0.074 4.074 19 C -0.072 4.072 20 N -0.209 5.209 21 C 0.019 3.981 22 C -0.205 4.205 23 C -0.093 4.093 24 C -0.200 4.200 25 C 0.076 3.924 26 O -0.326 6.326 27 C -0.208 4.208 28 C -0.049 4.049 29 C -0.086 4.086 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.039 0.961 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.161 0.839 46 H 0.269 0.731 47 H 0.138 0.862 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.960 7.201 26.643 27.757 hybrid contribution -0.972 -1.020 -0.870 1.656 sum -3.932 6.180 25.773 26.793 Atomic orbital electron populations 1.22438 0.93811 1.02897 1.04555 1.21603 0.95187 0.99064 0.87520 0.84968 1.21151 0.78649 0.85845 0.85271 1.90501 1.45832 1.23490 1.86135 1.48113 1.62821 1.16786 1.06332 1.22104 0.99718 0.81179 1.04160 1.18715 0.94776 0.90970 0.81658 1.21677 0.97185 1.28624 1.10270 0.92775 1.25860 0.99010 0.97432 0.96903 1.70054 1.25814 1.41270 1.19739 0.85432 0.78934 0.78146 0.78405 1.18759 1.20811 1.19710 1.62081 1.59694 1.02088 1.01707 1.22375 0.99588 0.98162 0.87253 1.22457 0.98494 0.86823 0.99390 1.59268 1.56663 1.03931 1.01039 1.18968 0.93575 0.92687 0.92850 1.21594 0.99541 1.02336 0.97031 1.21224 0.97714 0.93768 0.96570 1.21583 1.02082 0.95507 1.00779 1.18409 0.96803 0.83605 0.93609 1.84761 1.48697 1.21638 1.77501 1.21112 1.04857 0.94470 1.00407 1.22103 0.98302 0.97128 0.87378 1.22513 0.97143 0.90131 0.98817 0.88200 0.90607 0.93532 0.91349 0.91599 0.88102 0.96081 0.98530 0.92447 0.92875 0.87209 0.87005 0.93127 0.83554 0.82688 0.83929 0.73058 0.86225 0.94726 0.90204 0.94214 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 8.03 71.98 0.58 -3.63 16 2 C 0.08 2.16 1.92 44.17 0.08 2.25 16 3 H 0.13 2.83 7.41 -2.39 -0.02 2.81 16 4 C 0.50 20.72 6.80 87.66 0.60 21.32 16 5 O -0.58 -29.78 13.06 -3.02 -0.04 -29.82 16 6 N -0.61 -25.62 2.86 -851.14 -2.43 -28.05 16 7 C 0.07 2.03 9.80 127.77 1.25 3.28 16 8 C 0.26 14.15 5.22 85.63 0.45 14.59 16 9 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 10 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 13 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 14 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 N -0.53 -14.77 4.57 -874.86 -3.99 -18.77 16 18 C 0.05 1.00 5.25 86.31 0.45 1.46 16 19 C 0.05 1.01 4.29 86.31 0.37 1.38 16 20 N -0.49 -11.44 4.75 -694.85 -3.30 -14.74 16 21 C 0.12 2.60 5.63 38.20 0.22 2.82 16 22 C -0.18 -3.25 8.81 22.42 0.20 -3.05 16 23 C -0.07 -1.11 10.03 22.23 0.22 -0.89 16 24 C -0.18 -3.03 9.98 22.39 0.22 -2.80 16 25 C 0.12 2.46 6.70 22.49 0.15 2.61 16 26 O -0.51 -9.39 13.50 -92.32 -1.25 -10.63 16 27 C -0.19 -4.32 9.13 22.49 0.21 -4.12 16 28 C 0.08 2.19 5.38 86.31 0.46 2.65 16 29 C 0.04 1.34 4.74 86.31 0.41 1.75 16 30 H 0.10 1.64 7.01 -2.39 -0.02 1.63 16 31 H 0.08 1.79 5.99 -2.39 -0.01 1.78 16 32 H 0.05 1.31 6.04 -2.39 -0.01 1.30 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 35 H 0.10 2.14 4.44 -2.39 -0.01 2.13 16 36 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 37 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.05 0.95 6.78 -2.39 -0.02 0.93 16 40 H 0.11 1.48 8.12 -2.39 -0.02 1.46 16 41 H 0.11 1.46 7.17 -2.39 -0.02 1.45 16 42 H 0.05 1.00 7.58 -2.39 -0.02 0.98 16 43 H 0.15 1.99 5.80 -2.91 -0.02 1.98 16 44 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.41 3.31 9.06 -74.06 -0.67 2.64 16 47 H 0.12 2.89 7.20 -2.91 -0.02 2.87 16 48 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 2.26 6.83 -2.39 -0.02 2.24 16 50 H 0.04 1.23 6.29 -2.39 -0.02 1.22 16 51 H 0.09 3.64 5.02 -2.39 -0.01 3.63 16 Total: -1.00 -79.26 392.26 -1.84 -81.10 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.29 Total: 20.54 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.57 Total: 9.73 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -9.44 Total: -117.98 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.29 Total: -40.46 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -79.26 -1.84 -81.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265975452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.032 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds