Wall clock time and date at job start Wed Apr 1 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46753 * 2 1 4 4 C 1.50702 * 109.46793 * 240.00029 * 2 1 3 5 5 O 1.21282 * 119.99683 * 239.99647 * 4 2 1 6 6 N 1.34772 * 119.99784 * 60.00186 * 4 2 1 7 7 C 1.46503 * 120.00402 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99776 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.47324 * 89.99927 * 8 6 4 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 6 11 11 C 1.37884 * 120.00126 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99707 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99956 * 0.27447 * 11 9 8 14 14 H 1.48503 * 109.47407 * 269.72718 * 13 11 9 15 15 H 1.48505 * 109.47281 * 29.72474 * 13 11 9 16 16 H 1.48501 * 109.47274 * 149.72572 * 13 11 9 17 17 N 1.46903 * 109.47002 * 120.00204 * 2 1 3 18 18 C 1.47443 * 110.99830 * 179.87473 * 17 2 1 19 19 C 1.54319 * 107.23455 * 123.25717 * 18 17 2 20 20 C 1.55137 * 103.01744 * 22.28228 * 19 18 17 21 21 H 1.09000 * 110.98848 * 82.47601 * 20 19 18 22 22 O 1.42901 * 110.99229 * 206.25577 * 20 19 18 23 23 C 1.42907 * 113.99863 * 268.54969 * 22 20 19 24 24 C 1.50697 * 109.46880 * 179.97438 * 23 22 20 25 25 C 1.38646 * 120.78917 * 269.71813 * 24 23 22 26 26 C 1.38213 * 119.16264 * 179.75846 * 25 24 23 27 27 N 1.31874 * 120.75846 * 0.53052 * 26 25 24 28 28 C 1.31865 * 121.72676 * 359.74435 * 27 26 25 29 29 C 1.38197 * 120.76729 * 359.97193 * 28 27 26 30 30 C 1.47841 * 111.00031 * 300.71645 * 17 2 1 31 31 H 1.08994 * 109.46986 * 60.00177 * 1 2 3 32 32 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46829 * 299.99560 * 1 2 3 34 34 H 1.08996 * 109.46996 * 270.00432 * 7 6 4 35 35 H 1.09003 * 109.46830 * 30.00501 * 7 6 4 36 36 H 1.09001 * 109.46690 * 149.99829 * 7 6 4 37 37 H 1.08996 * 109.47197 * 329.99665 * 8 6 4 38 38 H 1.09004 * 109.46923 * 210.00361 * 8 6 4 39 39 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.88778 * 242.66870 * 18 17 2 41 41 H 1.09005 * 109.88613 * 3.68770 * 18 17 2 42 42 H 1.08994 * 110.70136 * 140.66556 * 19 18 17 43 43 H 1.09001 * 110.70401 * 263.90090 * 19 18 17 44 44 H 1.08996 * 109.46874 * 299.99891 * 23 22 20 45 45 H 1.08997 * 109.47105 * 59.99564 * 23 22 20 46 46 H 1.08004 * 120.42113 * 0.02562 * 25 24 23 47 47 H 1.07992 * 119.62101 * 180.24514 * 26 25 24 48 48 H 1.08000 * 119.61600 * 180.02562 * 28 27 26 49 49 H 1.08005 * 120.42055 * 180.02562 * 29 28 27 50 50 H 1.09000 * 110.37399 * 332.46759 * 30 17 2 51 51 H 1.09004 * 110.37679 * 94.80892 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8640 0.9410 -2.5890 8 6 2.1954 -0.9402 -3.6507 9 6 1.2033 -1.9976 -4.0612 10 1 0.2989 -2.1408 -3.4885 11 6 1.4501 -2.7822 -5.1678 12 7 0.5839 -3.7047 -5.5262 13 14 3.0180 -2.5397 -6.1538 14 1 2.7776 -1.5440 -7.2290 15 1 4.0957 -2.0496 -5.2573 16 1 3.4272 -3.8326 -6.7589 17 7 2.0197 -0.6926 1.1994 18 6 3.4936 -0.7148 1.2320 19 6 3.9317 -0.0574 2.5576 20 6 2.6767 -0.2131 3.4563 21 1 2.6420 -1.2035 3.9102 22 8 2.6332 0.8070 4.4561 23 6 3.2635 0.4428 5.6859 24 6 3.1593 1.5865 6.6616 25 6 4.1466 2.5579 6.7246 26 6 4.0144 3.5949 7.6287 27 7 2.9705 3.6605 8.4319 28 6 2.0155 2.7516 8.4035 29 6 2.0767 1.6892 7.5218 30 6 1.5316 -0.0322 2.4289 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1838 0.6427 -2.6224 35 1 1.0273 1.5997 -1.7360 36 1 1.1219 1.4665 -3.5084 37 1 3.1557 -1.4078 -3.4335 38 1 2.3164 -0.2213 -4.4611 39 1 0.7574 -4.2564 -6.3049 40 1 3.8499 -1.7442 1.1930 41 1 3.8917 -0.1527 0.3872 42 1 4.7818 -0.5867 2.9878 43 1 4.1686 0.9956 2.4057 44 1 2.7696 -0.4356 6.1010 45 1 4.3139 0.2165 5.5027 46 1 5.0059 2.5073 6.0723 47 1 4.7770 4.3577 7.6812 48 1 1.1754 2.8390 9.0765 49 1 1.2912 0.9482 7.5030 50 1 1.3509 1.0268 2.2446 51 1 0.6224 -0.5170 2.7847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280893778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:39 Heat of formation + Delta-G solvation = -15.050179 kcal Electronic energy + Delta-G solvation = -30315.713286 eV Core-core repulsion = 26216.213881 eV Total energy + Delta-G solvation = -4099.499405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62737 -40.13752 -38.78311 -37.08778 -34.96380 -33.82016 -32.97405 -32.21200 -31.64097 -29.15217 -28.93350 -27.85160 -26.94947 -26.16044 -23.90106 -23.83494 -22.48074 -22.22095 -21.26373 -20.72501 -18.48337 -17.54322 -17.09576 -16.99366 -16.90365 -16.66429 -16.15864 -15.90368 -15.49489 -14.97668 -14.71238 -14.58994 -14.19147 -14.08224 -14.04917 -13.92581 -13.73482 -13.41960 -13.17853 -12.67244 -12.52440 -12.37902 -12.22678 -12.19518 -12.02981 -11.84826 -11.66399 -11.57703 -11.43664 -11.36434 -11.07471 -10.85820 -10.77938 -10.47677 -10.17160 -10.10633 -9.92093 -9.88695 -9.57789 -9.52611 -8.93587 -8.58388 -8.22937 -7.69356 -6.07563 -4.05894 0.70000 0.70939 3.02362 3.26545 3.32065 3.35104 3.38986 3.49661 3.76523 4.04305 4.08701 4.22235 4.25729 4.40137 4.48674 4.56138 4.61357 4.68816 4.82651 4.90488 4.91446 4.95904 5.11674 5.16772 5.19020 5.25194 5.27179 5.34913 5.38636 5.49473 5.51493 5.53318 5.60477 5.73568 5.80567 5.82467 5.84705 5.86670 5.91396 6.12277 6.23196 6.24844 6.38555 6.62335 6.76785 6.91586 6.99666 7.03455 7.34462 7.53454 7.62024 8.24044 8.48244 8.94710 9.00702 9.52665 11.05901 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.001814 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.027530 B =15427.921080 C =15631.372729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 H 0.060 0.940 4 C 0.513 3.487 5 O -0.523 6.523 6 N -0.598 5.598 7 C 0.083 3.917 8 C 0.217 3.783 9 C -0.526 4.526 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.264 1.264 16 H -0.284 1.284 17 N -0.503 5.503 18 C 0.058 3.942 19 C -0.168 4.168 20 C 0.079 3.921 21 H 0.081 0.919 22 O -0.369 6.369 23 C 0.101 3.899 24 C -0.044 4.044 25 C -0.152 4.152 26 C 0.096 3.904 27 N -0.484 5.484 28 C 0.096 3.904 29 C -0.152 4.152 30 C 0.052 3.948 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.025 0.975 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.136 0.864 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.137 0.863 50 H 0.057 0.943 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 14.175 24.983 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.048 4.048 3 H 0.077 0.923 4 C 0.298 3.702 5 O -0.398 6.398 6 N -0.331 5.331 7 C -0.061 4.061 8 C 0.097 3.903 9 C -0.565 4.565 10 H 0.093 0.907 11 C -0.131 4.131 12 N -0.536 5.536 13 Si 0.702 3.298 14 H -0.202 1.202 15 H -0.189 1.189 16 H -0.209 1.209 17 N -0.229 5.229 18 C -0.069 4.069 19 C -0.207 4.207 20 C 0.020 3.980 21 H 0.099 0.901 22 O -0.288 6.288 23 C 0.024 3.976 24 C -0.052 4.052 25 C -0.172 4.172 26 C -0.061 4.061 27 N -0.193 5.193 28 C -0.061 4.061 29 C -0.172 4.172 30 C -0.076 4.076 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.154 0.846 47 H 0.175 0.825 48 H 0.175 0.825 49 H 0.155 0.845 50 H 0.075 0.925 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.561 13.854 25.402 29.291 hybrid contribution 1.126 -0.080 -1.316 1.734 sum 5.686 13.774 24.086 28.323 Atomic orbital electron populations 1.22063 0.92201 1.04101 1.02789 1.21793 0.97459 0.95478 0.90113 0.92280 1.20047 0.81263 0.84971 0.83916 1.90665 1.37929 1.25319 1.85911 1.47784 1.50380 1.28275 1.06684 1.21815 0.95482 0.87347 1.01465 1.19668 0.96516 0.92560 0.81591 1.21325 1.06586 1.16672 1.11919 0.90724 1.24863 0.96411 0.94705 0.97099 1.69900 1.35713 1.21495 1.26466 0.86866 0.84465 0.77968 0.80538 1.20172 1.18902 1.20941 1.63407 1.08925 1.50495 1.00026 1.22662 0.87021 1.02097 0.95142 1.23368 0.98352 1.01902 0.97041 1.23300 0.95335 0.91114 0.88213 0.90062 1.87946 1.78235 1.40443 1.22171 1.21332 0.98070 0.94201 0.83954 1.20045 0.94269 0.95759 0.95123 1.22113 1.00144 0.95016 0.99963 1.22796 0.95363 0.96707 0.91234 1.67679 1.01966 1.26979 1.22679 1.22798 0.96787 0.89871 0.96640 1.22118 0.98320 1.00071 0.96686 1.22964 0.97228 0.98462 0.88944 0.90288 0.90927 0.92121 0.92379 0.92393 0.91486 0.94197 0.95752 0.92602 0.89339 0.92441 0.90647 0.90751 0.91704 0.91842 0.84600 0.82546 0.82511 0.84498 0.92470 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.71 37.16 0.32 -1.74 16 2 C 0.06 0.96 1.27 -68.86 -0.09 0.87 16 3 H 0.06 0.79 7.36 -51.93 -0.38 0.41 16 4 C 0.51 10.41 6.46 -10.99 -0.07 10.34 16 5 O -0.52 -12.72 14.37 5.56 0.08 -12.64 16 6 N -0.60 -12.23 2.86 -182.95 -0.52 -12.75 16 7 C 0.08 1.25 8.85 59.85 0.53 1.78 16 8 C 0.22 5.30 4.27 -5.20 -0.02 5.28 16 9 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 10 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 13 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.26 -6.36 6.53 56.52 0.37 -6.00 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 N -0.50 -7.34 4.83 -224.67 -1.08 -8.43 16 18 C 0.06 0.82 5.24 -2.84 -0.01 0.80 16 19 C -0.17 -1.75 6.68 -24.91 -0.17 -1.92 16 20 C 0.08 0.79 3.48 -24.59 -0.09 0.70 16 21 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 22 O -0.37 -3.63 10.14 -35.23 -0.36 -3.98 16 23 C 0.10 0.74 5.99 36.00 0.22 0.96 16 24 C -0.04 -0.34 5.55 -104.32 -0.58 -0.92 16 25 C -0.15 -1.11 9.82 -39.44 -0.39 -1.50 16 26 C 0.10 0.73 11.18 -17.54 -0.20 0.53 16 27 N -0.48 -4.43 10.36 -13.25 -0.14 -4.57 16 28 C 0.10 0.72 11.18 -17.55 -0.20 0.52 16 29 C -0.15 -1.09 9.82 -39.44 -0.39 -1.47 16 30 C 0.05 0.59 5.13 -2.30 -0.01 0.58 16 31 H 0.08 1.00 4.53 -51.93 -0.24 0.76 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.65 7.04 -51.93 -0.37 0.29 16 34 H 0.06 0.87 6.95 -51.93 -0.36 0.51 16 35 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 36 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 37 H 0.04 1.05 6.46 -51.93 -0.34 0.72 16 38 H 0.02 0.56 7.33 -51.93 -0.38 0.18 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 41 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 45 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 46 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 50 H 0.06 0.64 7.58 -51.93 -0.39 0.24 16 51 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 405.13 15.07 6.11 6.11 Total: -1.00 -36.00 405.13 -9.56 -45.56 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.18 Total: -0.50 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.58 Total: 1.30 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.97 Total: -52.75 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.28 Total: -16.62 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.00 -9.56 -45.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds