Wall clock time and date at job start Wed Apr 1 2020 05:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46753 * 2 1 4 4 C 1.50702 * 109.46793 * 240.00029 * 2 1 3 5 5 O 1.21282 * 119.99683 * 239.99647 * 4 2 1 6 6 N 1.34772 * 119.99784 * 60.00186 * 4 2 1 7 7 C 1.46503 * 120.00402 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99776 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.47324 * 89.99927 * 8 6 4 10 10 H 1.07999 * 119.99822 * 0.02562 * 9 8 6 11 11 C 1.37884 * 120.00126 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99707 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99956 * 0.27447 * 11 9 8 14 14 H 1.48503 * 109.47407 * 269.72718 * 13 11 9 15 15 H 1.48505 * 109.47281 * 29.72474 * 13 11 9 16 16 H 1.48501 * 109.47274 * 149.72572 * 13 11 9 17 17 N 1.46903 * 109.47002 * 120.00204 * 2 1 3 18 18 C 1.47443 * 110.99830 * 179.87473 * 17 2 1 19 19 C 1.54319 * 107.23455 * 123.25717 * 18 17 2 20 20 C 1.55137 * 103.01744 * 22.28228 * 19 18 17 21 21 H 1.09000 * 110.98848 * 82.47601 * 20 19 18 22 22 O 1.42901 * 110.99229 * 206.25577 * 20 19 18 23 23 C 1.42907 * 113.99863 * 268.54969 * 22 20 19 24 24 C 1.50697 * 109.46880 * 179.97438 * 23 22 20 25 25 C 1.38646 * 120.78917 * 269.71813 * 24 23 22 26 26 C 1.38213 * 119.16264 * 179.75846 * 25 24 23 27 27 N 1.31874 * 120.75846 * 0.53052 * 26 25 24 28 28 C 1.31865 * 121.72676 * 359.74435 * 27 26 25 29 29 C 1.38197 * 120.76729 * 359.97193 * 28 27 26 30 30 C 1.47841 * 111.00031 * 300.71645 * 17 2 1 31 31 H 1.08994 * 109.46986 * 60.00177 * 1 2 3 32 32 H 1.08998 * 109.46753 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46829 * 299.99560 * 1 2 3 34 34 H 1.08996 * 109.46996 * 270.00432 * 7 6 4 35 35 H 1.09003 * 109.46830 * 30.00501 * 7 6 4 36 36 H 1.09001 * 109.46690 * 149.99829 * 7 6 4 37 37 H 1.08996 * 109.47197 * 329.99665 * 8 6 4 38 38 H 1.09004 * 109.46923 * 210.00361 * 8 6 4 39 39 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.88778 * 242.66870 * 18 17 2 41 41 H 1.09005 * 109.88613 * 3.68770 * 18 17 2 42 42 H 1.08994 * 110.70136 * 140.66556 * 19 18 17 43 43 H 1.09001 * 110.70401 * 263.90090 * 19 18 17 44 44 H 1.08996 * 109.46874 * 299.99891 * 23 22 20 45 45 H 1.08997 * 109.47105 * 59.99564 * 23 22 20 46 46 H 1.08004 * 120.42113 * 0.02562 * 25 24 23 47 47 H 1.07992 * 119.62101 * 180.24514 * 26 25 24 48 48 H 1.08000 * 119.61600 * 180.02562 * 28 27 26 49 49 H 1.08005 * 120.42055 * 180.02562 * 29 28 27 50 50 H 1.09000 * 110.37399 * 332.46759 * 30 17 2 51 51 H 1.09004 * 110.37679 * 94.80892 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.8640 0.9410 -2.5890 8 6 2.1954 -0.9402 -3.6507 9 6 1.2033 -1.9976 -4.0612 10 1 0.2989 -2.1408 -3.4885 11 6 1.4501 -2.7822 -5.1678 12 7 0.5839 -3.7047 -5.5262 13 14 3.0180 -2.5397 -6.1538 14 1 2.7776 -1.5440 -7.2290 15 1 4.0957 -2.0496 -5.2573 16 1 3.4272 -3.8326 -6.7589 17 7 2.0197 -0.6926 1.1994 18 6 3.4936 -0.7148 1.2320 19 6 3.9317 -0.0574 2.5576 20 6 2.6767 -0.2131 3.4563 21 1 2.6420 -1.2035 3.9102 22 8 2.6332 0.8070 4.4561 23 6 3.2635 0.4428 5.6859 24 6 3.1593 1.5865 6.6616 25 6 4.1466 2.5579 6.7246 26 6 4.0144 3.5949 7.6287 27 7 2.9705 3.6605 8.4319 28 6 2.0155 2.7516 8.4035 29 6 2.0767 1.6892 7.5218 30 6 1.5316 -0.0322 2.4289 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1838 0.6427 -2.6224 35 1 1.0273 1.5997 -1.7360 36 1 1.1219 1.4665 -3.5084 37 1 3.1557 -1.4078 -3.4335 38 1 2.3164 -0.2213 -4.4611 39 1 0.7574 -4.2564 -6.3049 40 1 3.8499 -1.7442 1.1930 41 1 3.8917 -0.1527 0.3872 42 1 4.7818 -0.5867 2.9878 43 1 4.1686 0.9956 2.4057 44 1 2.7696 -0.4356 6.1010 45 1 4.3139 0.2165 5.5027 46 1 5.0059 2.5073 6.0723 47 1 4.7770 4.3577 7.6812 48 1 1.1754 2.8390 9.0765 49 1 1.2912 0.9482 7.5030 50 1 1.3509 1.0268 2.2446 51 1 0.6224 -0.5170 2.7847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280893778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:39 Heat of formation + Delta-G solvation = -41.244065 kcal Electronic energy + Delta-G solvation = -30316.849138 eV Core-core repulsion = 26216.213881 eV Total energy + Delta-G solvation = -4100.635257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45801 -41.09612 -39.87290 -38.03911 -36.64072 -34.97157 -34.37238 -33.56229 -32.13984 -30.69122 -29.83449 -29.23398 -27.70963 -27.43413 -25.38075 -24.41068 -23.76433 -23.01018 -22.20720 -21.83445 -19.96313 -19.14230 -18.23258 -18.05809 -17.84558 -17.47963 -17.09169 -16.93436 -16.50296 -16.21859 -16.06769 -15.62457 -15.43384 -15.03608 -14.98913 -14.71196 -14.64465 -14.54950 -14.31816 -14.22726 -13.84045 -13.66976 -13.35989 -13.33218 -13.22910 -13.05045 -12.84520 -12.70241 -12.54970 -12.45240 -12.33318 -12.21308 -12.04916 -11.99995 -11.75208 -11.65129 -10.81830 -10.73833 -10.60782 -10.50162 -10.45642 -10.08483 -9.39753 -9.31477 -8.33584 -6.38346 0.15402 0.20337 1.31009 1.35981 1.46485 1.76817 2.14490 2.31087 2.48580 2.90350 3.00283 3.10928 3.51539 3.53881 3.60550 3.73129 3.77820 3.82737 3.98073 4.04425 4.09193 4.13449 4.21012 4.22301 4.37496 4.43150 4.43963 4.53854 4.57414 4.64190 4.69965 4.71304 4.73046 4.79299 4.84204 4.88437 4.89752 4.95150 4.96468 4.98510 5.00785 5.15502 5.28103 5.35523 5.45997 5.60793 5.76068 5.87128 5.93914 6.17206 6.24992 6.62808 6.69698 7.01179 7.21994 7.43394 8.83515 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027798 B = 0.001814 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.027530 B =15427.921080 C =15631.372729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.088 0.912 4 C 0.500 3.500 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.534 4.534 10 H 0.027 0.973 11 C 0.009 3.991 12 N -0.945 5.945 13 Si 0.949 3.051 14 H -0.250 1.250 15 H -0.256 1.256 16 H -0.283 1.283 17 N -0.527 5.527 18 C 0.060 3.940 19 C -0.155 4.155 20 C 0.088 3.912 21 H 0.089 0.911 22 O -0.379 6.379 23 C 0.099 3.901 24 C -0.057 4.057 25 C -0.157 4.157 26 C 0.084 3.916 27 N -0.512 5.512 28 C 0.084 3.916 29 C -0.156 4.156 30 C 0.053 3.947 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.018 0.982 38 H 0.050 0.950 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.152 0.848 47 H 0.176 0.824 48 H 0.177 0.823 49 H 0.154 0.846 50 H 0.066 0.934 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 16.556 25.941 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 H 0.105 0.895 4 C 0.288 3.712 5 O -0.454 6.454 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.573 4.573 10 H 0.045 0.955 11 C -0.189 4.189 12 N -0.586 5.586 13 Si 0.772 3.228 14 H -0.174 1.174 15 H -0.180 1.180 16 H -0.208 1.208 17 N -0.253 5.253 18 C -0.067 4.067 19 C -0.193 4.193 20 C 0.030 3.970 21 H 0.107 0.893 22 O -0.298 6.298 23 C 0.023 3.977 24 C -0.065 4.065 25 C -0.177 4.177 26 C -0.072 4.072 27 N -0.222 5.222 28 C -0.072 4.072 29 C -0.175 4.175 30 C -0.074 4.074 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.169 0.831 47 H 0.193 0.807 48 H 0.194 0.806 49 H 0.172 0.828 50 H 0.084 0.916 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.332 16.288 26.384 31.462 hybrid contribution 0.792 -0.854 -1.534 1.926 sum 6.124 15.434 24.850 29.887 Atomic orbital electron populations 1.22062 0.90783 1.02831 1.04903 1.21714 0.98249 0.95826 0.87809 0.89460 1.21102 0.80210 0.84565 0.85288 1.90629 1.40206 1.27798 1.86809 1.47900 1.50885 1.29413 1.05701 1.22136 0.94472 0.85915 1.04144 1.19338 0.94221 0.92227 0.83953 1.21551 1.05953 1.18306 1.11480 0.95455 1.25875 1.00343 0.94165 0.98484 1.70060 1.38200 1.22839 1.27464 0.85690 0.79433 0.78514 0.79172 1.17445 1.18045 1.20826 1.63309 1.09252 1.51770 1.00987 1.22514 0.87022 1.00612 0.96571 1.23267 0.99160 1.01869 0.95049 1.23140 0.94171 0.91627 0.88103 0.89282 1.87921 1.78608 1.40439 1.22818 1.21474 0.98769 0.94504 0.82977 1.20238 0.94692 0.96117 0.95483 1.22332 1.00605 0.94716 1.00005 1.23166 0.95534 0.97422 0.91111 1.67693 1.02882 1.27995 1.23650 1.23183 0.97109 0.89778 0.97125 1.22349 0.98629 1.00253 0.96290 1.23005 0.97919 0.98685 0.87838 0.89417 0.93880 0.88731 0.92478 0.88348 0.90051 0.96357 0.93223 0.92320 0.92057 0.94268 0.89114 0.90267 0.90378 0.90726 0.83065 0.80742 0.80630 0.82813 0.91579 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.71 71.98 0.63 -3.10 16 2 C 0.08 2.19 1.27 44.17 0.06 2.25 16 3 H 0.09 2.06 7.36 -2.39 -0.02 2.04 16 4 C 0.50 20.55 6.46 87.66 0.57 21.11 16 5 O -0.58 -29.19 14.37 -3.04 -0.04 -29.23 16 6 N -0.61 -24.67 2.86 -851.13 -2.43 -27.10 16 7 C 0.08 2.11 8.85 127.77 1.13 3.24 16 8 C 0.23 11.04 4.27 85.63 0.37 11.40 16 9 C -0.53 -31.81 9.94 25.60 0.25 -31.56 16 10 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 11 C 0.01 0.54 5.47 84.66 0.46 1.01 16 12 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 13 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 14 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.26 -11.66 6.53 99.48 0.65 -11.01 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 N -0.53 -14.96 4.83 -864.72 -4.18 -19.14 16 18 C 0.06 1.69 5.24 86.65 0.45 2.15 16 19 C -0.15 -2.94 6.68 31.77 0.21 -2.73 16 20 C 0.09 1.54 3.48 31.98 0.11 1.65 16 21 H 0.09 1.43 7.90 -2.39 -0.02 1.41 16 22 O -0.38 -6.34 10.14 -148.98 -1.51 -7.85 16 23 C 0.10 1.19 5.99 71.23 0.43 1.62 16 24 C -0.06 -0.77 5.55 -19.67 -0.11 -0.88 16 25 C -0.16 -1.99 9.82 22.36 0.22 -1.77 16 26 C 0.08 1.17 11.18 84.68 0.95 2.12 16 27 N -0.51 -8.86 10.36 -195.85 -2.03 -10.89 16 28 C 0.08 1.16 11.18 84.68 0.95 2.10 16 29 C -0.16 -1.93 9.82 22.36 0.22 -1.71 16 30 C 0.05 1.07 5.13 86.77 0.45 1.52 16 31 H 0.09 2.03 4.53 -2.39 -0.01 2.02 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.73 7.04 -2.39 -0.02 1.72 16 34 H 0.06 1.62 6.95 -2.39 -0.02 1.61 16 35 H 0.10 1.95 6.01 -2.39 -0.01 1.94 16 36 H 0.08 2.05 7.89 -2.39 -0.02 2.03 16 37 H 0.02 0.98 6.46 -2.39 -0.02 0.96 16 38 H 0.05 2.18 7.33 -2.39 -0.02 2.17 16 39 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 40 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16 41 H 0.04 1.21 6.91 -2.38 -0.02 1.19 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 45 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 46 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 48 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 49 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 50 H 0.07 1.24 7.58 -2.39 -0.02 1.22 16 51 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -82.84 405.13 0.19 -82.65 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.86 Total: 16.56 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 7.34 Total: 8.42 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.34 Total: -117.15 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.55 Total: -37.08 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -82.84 0.19 -82.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.408 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds