Wall clock time and date at job start Wed Apr 1 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.50696 * 109.47251 * 119.99356 * 2 1 3 5 5 O 1.21287 * 119.99988 * 88.46950 * 4 2 1 6 6 N 1.34774 * 120.00428 * 268.46858 * 4 2 1 7 7 C 1.46500 * 119.99755 * 3.76574 * 6 4 2 8 8 C 1.46501 * 120.00160 * 183.77100 * 6 4 2 9 9 C 1.50700 * 109.46690 * 269.99657 * 8 6 4 10 10 H 1.07997 * 120.00570 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99761 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99806 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47089 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47002 * 300.00074 * 13 11 9 16 16 H 1.48501 * 109.47186 * 60.00097 * 13 11 9 17 17 N 1.46896 * 109.47236 * 239.99936 * 2 1 3 18 18 C 1.47448 * 110.99996 * 310.28172 * 17 2 1 19 19 C 1.54314 * 107.23320 * 123.26036 * 18 17 2 20 20 C 1.55133 * 103.02229 * 22.28404 * 19 18 17 21 21 H 1.09003 * 110.99128 * 82.43562 * 20 19 18 22 22 O 1.42895 * 110.99380 * 206.22040 * 20 19 18 23 23 C 1.42904 * 114.00136 * 268.54726 * 22 20 19 24 24 C 1.50697 * 109.47623 * 179.97438 * 23 22 20 25 25 C 1.38644 * 120.78880 * 269.72266 * 24 23 22 26 26 C 1.38204 * 119.16011 * 179.75230 * 25 24 23 27 27 N 1.31867 * 120.76598 * 0.52977 * 26 25 24 28 28 C 1.31877 * 121.72402 * 359.74183 * 27 26 25 29 29 C 1.38195 * 120.76234 * 359.97438 * 28 27 26 30 30 C 1.47847 * 111.00552 * 71.12456 * 17 2 1 31 31 H 1.09000 * 109.47541 * 313.03515 * 1 2 3 32 32 H 1.09004 * 109.47174 * 73.03723 * 1 2 3 33 33 H 1.08996 * 109.47213 * 193.03740 * 1 2 3 34 34 H 1.08998 * 109.47364 * 275.34540 * 7 6 4 35 35 H 1.08995 * 109.47133 * 35.34619 * 7 6 4 36 36 H 1.08999 * 109.47198 * 155.34469 * 7 6 4 37 37 H 1.08997 * 109.47037 * 149.99986 * 8 6 4 38 38 H 1.08997 * 109.47002 * 29.99549 * 8 6 4 39 39 H 0.96996 * 120.00878 * 0.02562 * 12 11 9 40 40 H 1.09001 * 109.88786 * 242.66809 * 18 17 2 41 41 H 1.08997 * 109.88467 * 3.68623 * 18 17 2 42 42 H 1.09000 * 110.70226 * 140.67079 * 19 18 17 43 43 H 1.09002 * 110.70354 * 263.89762 * 19 18 17 44 44 H 1.09004 * 109.46942 * 299.99875 * 23 22 20 45 45 H 1.09003 * 109.46550 * 59.99236 * 23 22 20 46 46 H 1.07998 * 120.42276 * 359.97438 * 25 24 23 47 47 H 1.08000 * 119.61991 * 180.24919 * 26 25 24 48 48 H 1.08000 * 119.61692 * 179.97438 * 28 27 26 49 49 H 1.08009 * 120.41747 * 180.02562 * 29 28 27 50 50 H 1.09002 * 110.36882 * 332.46635 * 30 17 2 51 51 H 1.08996 * 110.37008 * 94.80640 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.2080 -1.9101 1.2089 6 7 2.2864 -0.0122 2.3551 7 6 1.9964 1.4228 2.4076 8 6 2.8526 -0.6885 3.5248 9 6 1.7363 -1.2024 4.3971 10 1 0.7080 -1.0418 4.1088 11 6 2.0279 -1.8786 5.5628 12 7 3.2801 -2.0746 5.9136 13 14 0.6442 -2.5163 6.6436 14 1 1.2182 -3.2017 7.8294 15 1 -0.1994 -1.3787 7.0902 16 1 -0.1860 -3.4749 5.8709 17 7 2.0196 -0.6925 -1.1994 18 6 1.3567 -1.9994 -1.3627 19 6 0.6928 -2.0044 -2.7557 20 6 1.4941 -0.9240 -3.5287 21 1 2.4236 -1.3348 -3.9230 22 8 0.7058 -0.3525 -4.5745 23 6 0.8444 -1.0131 -5.8341 24 6 -0.0266 -0.3312 -6.8576 25 6 -1.3354 -0.7407 -7.0614 26 6 -2.1059 -0.0882 -8.0052 27 7 -1.6064 0.9052 -8.7140 28 6 -0.3644 1.3176 -8.5508 29 6 0.4635 0.7168 -7.6216 30 6 1.7753 0.1143 -2.4140 31 1 -0.3634 0.7013 0.7511 32 1 -0.3634 0.2998 -0.9830 33 1 -0.3633 -1.0011 0.2318 34 1 2.8363 1.9788 1.9911 35 1 1.0979 1.6334 1.8276 36 1 1.8391 1.7240 3.4433 37 1 3.4620 0.0153 4.0917 38 1 3.4717 -1.5236 3.1973 39 1 3.9986 -1.7432 5.3526 40 1 2.0941 -2.7996 -1.3004 41 1 0.6008 -2.1309 -0.5885 42 1 0.8021 -2.9791 -3.2312 43 1 -0.3585 -1.7258 -2.6826 44 1 1.8852 -0.9688 -6.1550 45 1 0.5391 -2.0546 -5.7336 46 1 -1.7488 -1.5569 -6.4875 47 1 -3.1277 -0.3984 -8.1672 48 1 0.0099 2.1343 -9.1502 49 1 1.4797 1.0594 -7.4922 50 1 0.9101 0.7619 -2.2717 51 1 2.6570 0.7060 -2.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280893783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:43 Heat of formation + Delta-G solvation = -25.602100 kcal Electronic energy + Delta-G solvation = -30368.406560 eV Core-core repulsion = 26268.449590 eV Total energy + Delta-G solvation = -4099.956970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.64670 -40.23502 -38.74298 -37.20124 -34.89627 -33.80526 -33.00027 -32.19689 -31.64845 -29.27185 -28.48399 -27.45727 -26.80254 -25.93070 -24.12418 -23.90653 -22.64374 -22.43714 -21.42449 -20.63247 -18.45321 -17.65448 -17.14278 -16.92467 -16.90624 -16.49953 -16.14027 -15.86090 -15.46702 -14.98909 -14.94583 -14.54476 -14.19171 -14.11265 -14.00299 -13.75061 -13.61871 -13.42263 -13.23231 -12.80735 -12.54445 -12.35777 -12.20269 -12.14622 -11.95567 -11.77153 -11.71814 -11.54676 -11.44837 -11.33569 -11.11528 -10.89450 -10.72796 -10.57397 -10.17919 -10.10509 -9.93016 -9.90137 -9.58515 -9.11435 -8.90429 -8.38333 -8.26009 -7.60497 -6.37742 -4.09640 0.69191 0.70265 2.99636 3.31210 3.42048 3.46178 3.51821 3.63740 3.77326 4.03728 4.16565 4.21803 4.25030 4.48901 4.53840 4.58483 4.60506 4.68102 4.80432 4.89121 4.90583 4.94765 5.07713 5.16627 5.18105 5.19143 5.34218 5.36897 5.39849 5.42036 5.51052 5.53383 5.58675 5.63813 5.73690 5.79489 5.84025 5.86039 5.92058 6.09971 6.21970 6.24120 6.27883 6.73422 6.79267 6.95854 6.98847 7.14758 7.41806 7.52795 8.04688 8.30278 8.43722 8.78364 9.04113 9.59927 10.99405 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.001811 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.484306 B =15457.903845 C =15661.387950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.529 6.529 6 N -0.599 5.599 7 C 0.083 3.917 8 C 0.237 3.763 9 C -0.604 4.604 10 H 0.050 0.950 11 C 0.019 3.981 12 N -0.909 5.909 13 Si 1.071 2.929 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.288 1.288 17 N -0.506 5.506 18 C 0.050 3.950 19 C -0.167 4.167 20 C 0.080 3.920 21 H 0.080 0.920 22 O -0.369 6.369 23 C 0.101 3.899 24 C -0.044 4.044 25 C -0.152 4.152 26 C 0.096 3.904 27 N -0.483 5.483 28 C 0.096 3.904 29 C -0.152 4.152 30 C 0.047 3.953 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.033 0.967 39 H 0.267 0.733 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.136 0.864 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.137 0.863 50 H 0.061 0.939 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 6.877 -27.176 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.054 4.054 3 H 0.115 0.885 4 C 0.303 3.697 5 O -0.405 6.405 6 N -0.331 5.331 7 C -0.061 4.061 8 C 0.118 3.882 9 C -0.643 4.643 10 H 0.068 0.932 11 C -0.185 4.185 12 N -0.545 5.545 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.215 1.215 16 H -0.215 1.215 17 N -0.231 5.231 18 C -0.077 4.077 19 C -0.206 4.206 20 C 0.021 3.979 21 H 0.098 0.902 22 O -0.288 6.288 23 C 0.025 3.975 24 C -0.052 4.052 25 C -0.172 4.172 26 C -0.061 4.061 27 N -0.193 5.193 28 C -0.061 4.061 29 C -0.172 4.172 30 C -0.081 4.081 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.154 0.846 47 H 0.175 0.825 48 H 0.175 0.825 49 H 0.155 0.845 50 H 0.080 0.920 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.770 5.906 -26.259 27.754 hybrid contribution 0.081 0.472 -0.831 0.959 sum -6.689 6.378 -27.091 28.624 Atomic orbital electron populations 1.22378 0.95251 1.03577 1.02537 1.21855 0.94381 0.98653 0.90522 0.88483 1.19970 0.78562 0.87559 0.83585 1.90648 1.51900 1.14294 1.83673 1.47914 1.62695 1.08495 1.14028 1.21658 0.99213 0.82098 1.03115 1.19327 0.94619 0.92471 0.81820 1.22235 0.93443 1.40178 1.08457 0.93168 1.25803 1.01132 0.94620 0.96980 1.70795 0.99170 1.44252 1.40333 0.83515 0.74245 0.76374 0.75961 1.20655 1.21492 1.21453 1.63549 1.55955 1.03038 1.00538 1.22772 0.98153 0.91930 0.94834 1.23369 1.00547 0.99441 0.97200 1.23275 0.93500 0.93771 0.87305 0.90189 1.87943 1.67421 1.56012 1.17418 1.21331 0.97904 0.95407 0.82896 1.20041 0.94512 0.95452 0.95200 1.22115 0.94048 1.01620 0.99419 1.22799 1.00080 0.91485 0.91708 1.67683 1.14143 1.12785 1.24677 1.22798 0.89284 0.98308 0.95722 1.22111 1.01865 0.96208 0.97042 1.22988 1.01344 0.95467 0.88305 0.91289 0.91600 0.91248 0.93730 0.92573 0.90571 0.96111 0.94931 0.92226 0.89828 0.90778 0.90731 0.90657 0.91753 0.91819 0.84573 0.82524 0.82521 0.84534 0.92034 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.28 37.15 0.31 -2.10 16 2 C 0.06 0.89 1.82 -68.87 -0.13 0.76 16 3 H 0.10 1.30 6.74 -51.93 -0.35 0.95 16 4 C 0.52 10.83 6.71 -10.99 -0.07 10.76 16 5 O -0.53 -13.23 14.47 5.55 0.08 -13.15 16 6 N -0.60 -12.85 2.86 -182.96 -0.52 -13.37 16 7 C 0.08 1.33 9.61 59.85 0.57 1.91 16 8 C 0.24 6.23 4.42 -5.19 -0.02 6.21 16 9 C -0.60 -17.38 9.39 -34.44 -0.32 -17.70 16 10 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 11 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 12 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 13 Si 1.07 25.70 29.90 -169.99 -5.08 20.61 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 N -0.51 -7.29 5.06 -224.68 -1.14 -8.43 16 18 C 0.05 0.72 4.83 -2.84 -0.01 0.70 16 19 C -0.17 -1.78 6.68 -24.91 -0.17 -1.94 16 20 C 0.08 0.79 3.48 -24.60 -0.09 0.71 16 21 H 0.08 0.73 7.90 -51.93 -0.41 0.32 16 22 O -0.37 -3.61 10.14 -35.23 -0.36 -3.97 16 23 C 0.10 0.74 5.99 36.00 0.22 0.96 16 24 C -0.04 -0.34 5.55 -104.32 -0.58 -0.92 16 25 C -0.15 -1.12 9.82 -39.44 -0.39 -1.51 16 26 C 0.10 0.74 11.18 -17.55 -0.20 0.54 16 27 N -0.48 -4.45 10.36 -13.25 -0.14 -4.59 16 28 C 0.10 0.72 11.18 -17.55 -0.20 0.52 16 29 C -0.15 -1.09 9.82 -39.44 -0.39 -1.47 16 30 C 0.05 0.52 6.14 -2.30 -0.01 0.51 16 31 H 0.07 0.88 6.99 -51.93 -0.36 0.51 16 32 H 0.07 0.76 6.41 -51.93 -0.33 0.43 16 33 H 0.07 1.05 6.31 -51.93 -0.33 0.72 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.75 5.80 -51.93 -0.30 0.45 16 36 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 37 H 0.02 0.55 7.94 -51.93 -0.41 0.13 16 38 H 0.03 0.95 7.34 -51.93 -0.38 0.57 16 39 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.20 4.92 -51.93 -0.26 0.94 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 45 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 46 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 49 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 50 H 0.06 0.68 6.27 -51.93 -0.33 0.35 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -35.74 406.91 -9.86 -45.60 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.02 Total: -0.12 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.57 Total: -1.61 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.04 Total: -53.50 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.28 Total: -17.12 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.74 -9.86 -45.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.999 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds