Wall clock time and date at job start Wed Apr 1 2020 05:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47103 * 2 1 4 4 C 1.50696 * 109.47251 * 119.99356 * 2 1 3 5 5 O 1.21287 * 119.99988 * 88.46950 * 4 2 1 6 6 N 1.34774 * 120.00428 * 268.46858 * 4 2 1 7 7 C 1.46500 * 119.99755 * 3.76574 * 6 4 2 8 8 C 1.46501 * 120.00160 * 183.77100 * 6 4 2 9 9 C 1.50700 * 109.46690 * 269.99657 * 8 6 4 10 10 H 1.07997 * 120.00570 * 0.02562 * 9 8 6 11 11 C 1.37881 * 119.99761 * 179.97438 * 9 8 6 12 12 N 1.31510 * 119.99806 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47089 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47002 * 300.00074 * 13 11 9 16 16 H 1.48501 * 109.47186 * 60.00097 * 13 11 9 17 17 N 1.46896 * 109.47236 * 239.99936 * 2 1 3 18 18 C 1.47448 * 110.99996 * 310.28172 * 17 2 1 19 19 C 1.54314 * 107.23320 * 123.26036 * 18 17 2 20 20 C 1.55133 * 103.02229 * 22.28404 * 19 18 17 21 21 H 1.09003 * 110.99128 * 82.43562 * 20 19 18 22 22 O 1.42895 * 110.99380 * 206.22040 * 20 19 18 23 23 C 1.42904 * 114.00136 * 268.54726 * 22 20 19 24 24 C 1.50697 * 109.47623 * 179.97438 * 23 22 20 25 25 C 1.38644 * 120.78880 * 269.72266 * 24 23 22 26 26 C 1.38204 * 119.16011 * 179.75230 * 25 24 23 27 27 N 1.31867 * 120.76598 * 0.52977 * 26 25 24 28 28 C 1.31877 * 121.72402 * 359.74183 * 27 26 25 29 29 C 1.38195 * 120.76234 * 359.97438 * 28 27 26 30 30 C 1.47847 * 111.00552 * 71.12456 * 17 2 1 31 31 H 1.09000 * 109.47541 * 313.03515 * 1 2 3 32 32 H 1.09004 * 109.47174 * 73.03723 * 1 2 3 33 33 H 1.08996 * 109.47213 * 193.03740 * 1 2 3 34 34 H 1.08998 * 109.47364 * 275.34540 * 7 6 4 35 35 H 1.08995 * 109.47133 * 35.34619 * 7 6 4 36 36 H 1.08999 * 109.47198 * 155.34469 * 7 6 4 37 37 H 1.08997 * 109.47037 * 149.99986 * 8 6 4 38 38 H 1.08997 * 109.47002 * 29.99549 * 8 6 4 39 39 H 0.96996 * 120.00878 * 0.02562 * 12 11 9 40 40 H 1.09001 * 109.88786 * 242.66809 * 18 17 2 41 41 H 1.08997 * 109.88467 * 3.68623 * 18 17 2 42 42 H 1.09000 * 110.70226 * 140.67079 * 19 18 17 43 43 H 1.09002 * 110.70354 * 263.89762 * 19 18 17 44 44 H 1.09004 * 109.46942 * 299.99875 * 23 22 20 45 45 H 1.09003 * 109.46550 * 59.99236 * 23 22 20 46 46 H 1.07998 * 120.42276 * 359.97438 * 25 24 23 47 47 H 1.08000 * 119.61991 * 180.24919 * 26 25 24 48 48 H 1.08000 * 119.61692 * 179.97438 * 28 27 26 49 49 H 1.08009 * 120.41747 * 180.02562 * 29 28 27 50 50 H 1.09002 * 110.36882 * 332.46635 * 30 17 2 51 51 H 1.08996 * 110.37008 * 94.80640 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.2080 -1.9101 1.2089 6 7 2.2864 -0.0122 2.3551 7 6 1.9964 1.4228 2.4076 8 6 2.8526 -0.6885 3.5248 9 6 1.7363 -1.2024 4.3971 10 1 0.7080 -1.0418 4.1088 11 6 2.0279 -1.8786 5.5628 12 7 3.2801 -2.0746 5.9136 13 14 0.6442 -2.5163 6.6436 14 1 1.2182 -3.2017 7.8294 15 1 -0.1994 -1.3787 7.0902 16 1 -0.1860 -3.4749 5.8709 17 7 2.0196 -0.6925 -1.1994 18 6 1.3567 -1.9994 -1.3627 19 6 0.6928 -2.0044 -2.7557 20 6 1.4941 -0.9240 -3.5287 21 1 2.4236 -1.3348 -3.9230 22 8 0.7058 -0.3525 -4.5745 23 6 0.8444 -1.0131 -5.8341 24 6 -0.0266 -0.3312 -6.8576 25 6 -1.3354 -0.7407 -7.0614 26 6 -2.1059 -0.0882 -8.0052 27 7 -1.6064 0.9052 -8.7140 28 6 -0.3644 1.3176 -8.5508 29 6 0.4635 0.7168 -7.6216 30 6 1.7753 0.1143 -2.4140 31 1 -0.3634 0.7013 0.7511 32 1 -0.3634 0.2998 -0.9830 33 1 -0.3633 -1.0011 0.2318 34 1 2.8363 1.9788 1.9911 35 1 1.0979 1.6334 1.8276 36 1 1.8391 1.7240 3.4433 37 1 3.4620 0.0153 4.0917 38 1 3.4717 -1.5236 3.1973 39 1 3.9986 -1.7432 5.3526 40 1 2.0941 -2.7996 -1.3004 41 1 0.6008 -2.1309 -0.5885 42 1 0.8021 -2.9791 -3.2312 43 1 -0.3585 -1.7258 -2.6826 44 1 1.8852 -0.9688 -6.1550 45 1 0.5391 -2.0546 -5.7336 46 1 -1.7488 -1.5569 -6.4875 47 1 -3.1277 -0.3984 -8.1672 48 1 0.0099 2.1343 -9.1502 49 1 1.4797 1.0594 -7.4922 50 1 0.9101 0.7619 -2.2717 51 1 2.6570 0.7060 -2.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280893783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:42 Heat of formation + Delta-G solvation = -50.827562 kcal Electronic energy + Delta-G solvation = -30369.500418 eV Core-core repulsion = 26268.449590 eV Total energy + Delta-G solvation = -4101.050829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55750 -41.10624 -39.92456 -38.17539 -36.70039 -35.08224 -34.40762 -33.32902 -32.14842 -30.29925 -29.59909 -29.09610 -27.49703 -27.39978 -25.81515 -24.42337 -24.29210 -23.00662 -22.30881 -21.82632 -19.96344 -19.00693 -18.44143 -17.93779 -17.84012 -17.48366 -16.98643 -16.78279 -16.50905 -16.29746 -16.02241 -15.66068 -15.59960 -15.12418 -14.83626 -14.73003 -14.66079 -14.54974 -14.45945 -14.08760 -13.80241 -13.62540 -13.52880 -13.29564 -13.18684 -13.01928 -12.91698 -12.81404 -12.58750 -12.50033 -12.45576 -12.27516 -12.22536 -11.96975 -11.60011 -11.19777 -10.74638 -10.67856 -10.62532 -10.47053 -10.45674 -10.09333 -9.46033 -9.37127 -8.69262 -6.45448 0.14571 0.19535 1.47793 1.56968 1.72094 1.76455 2.10316 2.47116 2.53431 2.92768 3.09170 3.14283 3.48310 3.52361 3.59602 3.71387 3.76877 3.81604 3.91978 4.01667 4.05379 4.11722 4.19603 4.20633 4.28121 4.41124 4.43162 4.51798 4.53498 4.55937 4.60532 4.61721 4.70490 4.75126 4.80545 4.84064 4.88896 4.92665 4.95032 4.96448 4.99950 5.12203 5.16578 5.34620 5.54098 5.75263 5.80932 5.83080 5.90255 6.13879 6.16052 6.44116 6.68275 7.00403 7.29017 7.42454 8.64921 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025276 B = 0.001811 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.484306 B =15457.903845 C =15661.387950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.125 0.875 4 C 0.507 3.493 5 O -0.583 6.583 6 N -0.608 5.608 7 C 0.077 3.923 8 C 0.248 3.752 9 C -0.614 4.614 10 H 0.044 0.956 11 C -0.033 4.033 12 N -0.931 5.931 13 Si 1.118 2.882 14 H -0.279 1.279 15 H -0.261 1.261 16 H -0.281 1.281 17 N -0.524 5.524 18 C 0.053 3.947 19 C -0.155 4.155 20 C 0.090 3.910 21 H 0.091 0.909 22 O -0.379 6.379 23 C 0.099 3.901 24 C -0.057 4.057 25 C -0.158 4.158 26 C 0.084 3.916 27 N -0.512 5.512 28 C 0.084 3.916 29 C -0.155 4.155 30 C 0.048 3.952 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.019 0.981 38 H -0.010 1.010 39 H 0.255 0.745 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.150 0.850 47 H 0.175 0.825 48 H 0.177 0.823 49 H 0.155 0.845 50 H 0.069 0.931 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 8.560 -28.768 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.039 4.039 3 H 0.143 0.857 4 C 0.295 3.705 5 O -0.462 6.462 6 N -0.340 5.340 7 C -0.065 4.065 8 C 0.126 3.874 9 C -0.652 4.652 10 H 0.063 0.937 11 C -0.231 4.231 12 N -0.568 5.568 13 Si 0.939 3.061 14 H -0.204 1.204 15 H -0.186 1.186 16 H -0.207 1.207 17 N -0.250 5.250 18 C -0.075 4.075 19 C -0.194 4.194 20 C 0.032 3.968 21 H 0.109 0.891 22 O -0.298 6.298 23 C 0.023 3.977 24 C -0.065 4.065 25 C -0.177 4.177 26 C -0.072 4.072 27 N -0.222 5.222 28 C -0.072 4.072 29 C -0.174 4.174 30 C -0.079 4.079 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.008 0.992 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.168 0.832 47 H 0.192 0.808 48 H 0.194 0.806 49 H 0.173 0.827 50 H 0.087 0.913 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.169 7.653 -27.892 30.054 hybrid contribution 0.565 -0.043 -0.408 0.698 sum -7.604 7.610 -28.300 30.276 Atomic orbital electron populations 1.22334 0.93624 1.02599 1.04381 1.21747 0.95351 0.98838 0.88007 0.85693 1.21102 0.77323 0.87263 0.84859 1.90616 1.54011 1.16921 1.84694 1.47997 1.62431 1.10716 1.12840 1.21963 1.02009 0.78845 1.03673 1.18852 0.93703 0.91505 0.83328 1.22513 0.93670 1.40141 1.08899 0.93737 1.27368 1.02561 0.94439 0.98749 1.70919 0.99742 1.45561 1.40571 0.82928 0.71863 0.76901 0.74406 1.20422 1.18554 1.20654 1.63455 1.56508 1.03477 1.01521 1.22606 0.96923 0.91531 0.96438 1.23271 1.00329 1.00792 0.95008 1.23120 0.93719 0.92819 0.87188 0.89140 1.87920 1.67431 1.56347 1.18069 1.21474 0.98808 0.95638 0.81788 1.20236 0.94837 0.95877 0.95571 1.22326 0.94086 1.01918 0.99400 1.23153 1.01062 0.91330 0.91705 1.67696 1.15159 1.13719 1.25646 1.23197 0.89004 0.98875 0.96123 1.22350 1.02673 0.95849 0.96570 1.23058 1.02306 0.95451 0.87118 0.90165 0.88994 0.93593 0.90751 0.89231 0.91358 0.96341 0.99196 0.93597 0.92508 0.93228 0.89332 0.90420 0.90234 0.90863 0.83187 0.80819 0.80578 0.82697 0.91266 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 8.28 71.98 0.60 -3.65 16 2 C 0.07 2.10 1.82 44.17 0.08 2.18 16 3 H 0.13 2.91 6.74 -2.38 -0.02 2.89 16 4 C 0.51 21.46 6.71 87.66 0.59 22.04 16 5 O -0.58 -30.63 14.47 -3.05 -0.04 -30.67 16 6 N -0.61 -26.24 2.86 -851.15 -2.43 -28.67 16 7 C 0.08 2.31 9.61 127.77 1.23 3.54 16 8 C 0.25 13.54 4.42 85.63 0.38 13.91 16 9 C -0.61 -36.11 9.39 25.60 0.24 -35.87 16 10 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 11 C -0.03 -1.96 5.46 84.66 0.46 -1.49 16 12 N -0.93 -58.57 13.65 21.45 0.29 -58.28 16 13 Si 1.12 51.65 29.90 68.60 2.05 53.70 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 N -0.52 -14.49 5.06 -864.77 -4.38 -18.86 16 18 C 0.05 1.51 4.83 86.64 0.42 1.93 16 19 C -0.16 -3.05 6.68 31.77 0.21 -2.83 16 20 C 0.09 1.54 3.48 31.98 0.11 1.65 16 21 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 22 O -0.38 -6.22 10.14 -148.98 -1.51 -7.73 16 23 C 0.10 1.17 5.99 71.23 0.43 1.60 16 24 C -0.06 -0.76 5.55 -19.67 -0.11 -0.87 16 25 C -0.16 -2.04 9.82 22.36 0.22 -1.82 16 26 C 0.08 1.19 11.18 84.68 0.95 2.13 16 27 N -0.51 -8.88 10.36 -195.85 -2.03 -10.91 16 28 C 0.08 1.14 11.18 84.68 0.95 2.09 16 29 C -0.15 -1.88 9.82 22.36 0.22 -1.66 16 30 C 0.05 0.93 6.14 86.77 0.53 1.46 16 31 H 0.08 1.80 6.99 -2.39 -0.02 1.78 16 32 H 0.09 1.82 6.41 -2.38 -0.02 1.80 16 33 H 0.05 1.37 6.31 -2.39 -0.02 1.36 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.08 5.80 -2.39 -0.01 2.06 16 36 H 0.07 2.16 8.03 -2.39 -0.02 2.14 16 37 H 0.02 1.01 7.94 -2.39 -0.02 0.99 16 38 H -0.01 -0.62 7.34 -2.39 -0.02 -0.64 16 39 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.66 4.92 -2.39 -0.01 1.65 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 45 H 0.07 0.73 8.10 -2.39 -0.02 0.71 16 46 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 48 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 49 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 50 H 0.07 1.26 6.27 -2.39 -0.01 1.24 16 51 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -81.56 406.91 0.47 -81.08 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.02 Total: 16.00 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 7.50 Total: 4.33 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -8.54 Total: -116.72 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.55 Total: -38.40 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -81.56 0.47 -81.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.256 kcal (2) G-P(sol) polarization free energy of solvation -81.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds