Wall clock time and date at job start Wed Apr 1 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47381 * 120.00052 * 2 1 3 5 5 O 1.21280 * 119.99979 * 120.00156 * 4 2 1 6 6 N 1.34779 * 120.00265 * 300.00427 * 4 2 1 7 7 C 1.46505 * 119.99551 * 359.97438 * 6 4 2 8 8 C 1.46498 * 120.00117 * 179.97438 * 6 4 2 9 9 C 1.50707 * 109.47072 * 89.99996 * 8 6 4 10 10 H 1.08003 * 119.99506 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00027 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99758 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47264 * 60.00100 * 13 11 9 15 15 H 1.48501 * 109.46873 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47413 * 299.99827 * 13 11 9 17 17 N 1.46903 * 109.47185 * 240.00385 * 2 1 3 18 18 C 1.47845 * 110.99915 * 52.71791 * 17 2 1 19 19 C 1.54906 * 104.79478 * 146.36638 * 18 17 2 20 20 C 1.55135 * 101.65428 * 322.92545 * 19 18 17 21 21 H 1.09003 * 110.85729 * 277.20235 * 20 19 18 22 22 O 1.42901 * 110.70792 * 154.03762 * 20 19 18 23 23 C 1.42901 * 113.99628 * 96.40051 * 22 20 19 24 24 C 1.50706 * 109.46695 * 179.97438 * 23 22 20 25 25 C 1.38654 * 120.79211 * 270.25611 * 24 23 22 26 26 C 1.38196 * 119.15994 * 180.26690 * 25 24 23 27 27 N 1.31872 * 120.76788 * 359.47179 * 26 25 24 28 28 C 1.31868 * 121.72272 * 0.28353 * 27 26 25 29 29 C 1.38202 * 120.76846 * 359.96950 * 28 27 26 30 30 C 1.47442 * 110.99977 * 173.55966 * 17 2 1 31 31 H 1.08999 * 109.47560 * 66.88570 * 1 2 3 32 32 H 1.09007 * 109.46777 * 186.88208 * 1 2 3 33 33 H 1.08995 * 109.47542 * 306.87992 * 1 2 3 34 34 H 1.08998 * 109.46684 * 90.00174 * 7 6 4 35 35 H 1.08999 * 109.46831 * 209.99928 * 7 6 4 36 36 H 1.08994 * 109.47282 * 330.00341 * 7 6 4 37 37 H 1.08997 * 109.47082 * 209.99361 * 8 6 4 38 38 H 1.08996 * 109.47242 * 330.00023 * 8 6 4 39 39 H 0.96989 * 119.99941 * 179.97438 * 12 11 9 40 40 H 1.09012 * 110.37015 * 265.18821 * 18 17 2 41 41 H 1.08991 * 110.37543 * 27.42155 * 18 17 2 42 42 H 1.09004 * 110.99004 * 204.83666 * 19 18 17 43 43 H 1.09000 * 110.99310 * 81.01879 * 19 18 17 44 44 H 1.08996 * 109.46974 * 60.00479 * 23 22 20 45 45 H 1.08993 * 109.47324 * 299.99942 * 23 22 20 46 46 H 1.08002 * 120.41637 * 0.04081 * 25 24 23 47 47 H 1.08007 * 119.61864 * 179.75279 * 26 25 24 48 48 H 1.07997 * 119.61624 * 179.97438 * 28 27 26 49 49 H 1.07992 * 120.42211 * 180.02562 * 29 28 27 50 50 H 1.08991 * 109.88950 * 117.33737 * 30 17 2 51 51 H 1.08997 * 110.02514 * 356.22080 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9414 2.5890 8 6 2.1947 -0.9410 3.6507 9 6 3.5224 -0.3579 4.0611 10 1 3.9592 0.4465 3.4879 11 6 4.1794 -0.8515 5.1682 12 7 3.6477 -1.8315 5.8658 13 14 5.8254 -0.1293 5.6765 14 1 5.6616 1.3168 5.9717 15 1 6.3200 -0.8296 6.8890 16 1 6.8037 -0.3014 4.5725 17 7 2.0197 -0.6924 -1.1995 18 6 1.4080 -0.1304 -2.4225 19 6 2.5099 -0.2463 -3.5051 20 6 3.7897 0.0609 -2.6838 21 1 3.9369 1.1362 -2.5824 22 8 4.9339 -0.5494 -3.2840 23 6 5.6818 0.3252 -4.1313 24 6 6.8594 -0.4187 -4.7068 25 6 8.0774 -0.4406 -4.0447 26 6 9.1365 -1.1286 -4.6058 27 7 8.9952 -1.7674 -5.7508 28 6 7.8505 -1.7722 -6.4054 29 6 6.7489 -1.1017 -5.9083 30 6 3.4854 -0.5798 -1.3132 31 1 -0.3634 0.4034 -0.9451 32 1 -0.3633 -1.0203 0.1232 33 1 -0.3634 0.6167 0.8220 34 1 -0.1832 0.6437 2.6221 35 1 1.1227 1.4666 3.5087 36 1 1.0286 1.6001 1.7362 37 1 1.4767 -0.8154 4.4611 38 1 2.3155 -2.0022 3.4334 39 1 4.1101 -2.1789 6.6444 40 1 0.5313 -0.7112 -2.7097 41 1 1.1361 0.9134 -2.2656 42 1 2.3638 0.4938 -4.2918 43 1 2.5449 -1.2535 -3.9203 44 1 6.0384 1.1761 -3.5509 45 1 5.0442 0.6794 -4.9412 46 1 8.1980 0.0766 -3.1043 47 1 10.0898 -1.1472 -4.0984 48 1 7.7728 -2.3063 -7.3409 49 1 5.8141 -1.1097 -6.4488 50 1 3.9387 -1.5694 -1.2578 51 1 3.8743 0.0514 -0.5143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280893790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:47 Heat of formation + Delta-G solvation = -19.605517 kcal Electronic energy + Delta-G solvation = -30597.690883 eV Core-core repulsion = 26497.993944 eV Total energy + Delta-G solvation = -4099.696939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48955 -40.03630 -38.64262 -37.03260 -34.80582 -33.74616 -32.91601 -32.13570 -31.49610 -29.40309 -28.53562 -27.46958 -26.55461 -26.05002 -24.11858 -23.75566 -22.52357 -22.27277 -21.20162 -20.67094 -18.39896 -17.50519 -17.09119 -16.79907 -16.58767 -16.34193 -16.07352 -15.89638 -15.16713 -15.03356 -14.76957 -14.53180 -14.43910 -14.01005 -13.90731 -13.79168 -13.39453 -13.14592 -12.95241 -12.78940 -12.48071 -12.21735 -12.14467 -12.03774 -12.01356 -11.77790 -11.53868 -11.43958 -11.32252 -11.16000 -11.06729 -10.89658 -10.82723 -10.54885 -10.14728 -10.03006 -9.78055 -9.74457 -9.63261 -9.43046 -8.83318 -8.42675 -8.14379 -7.60571 -6.03412 -4.08366 0.84234 0.85861 3.22462 3.31052 3.36141 3.37769 3.48352 3.63491 3.75829 4.18411 4.19857 4.32716 4.37886 4.44479 4.51337 4.58429 4.74290 4.82473 4.84309 4.99643 5.01948 5.05012 5.08202 5.20786 5.25001 5.30728 5.31112 5.33198 5.49356 5.51955 5.60901 5.61920 5.66403 5.73481 5.75620 5.86487 5.90984 5.92463 6.00611 6.12240 6.23140 6.30793 6.39375 6.92405 6.99208 7.02283 7.16021 7.47158 7.56872 7.67667 7.93113 8.24479 8.45161 8.91347 9.15596 9.56697 11.04608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.002681 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.758560 B =10442.079590 C =12979.992926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 H 0.059 0.941 4 C 0.509 3.491 5 O -0.520 6.520 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.526 4.526 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.500 5.500 18 C 0.045 3.955 19 C -0.149 4.149 20 C 0.066 3.934 21 H 0.068 0.932 22 O -0.362 6.362 23 C 0.100 3.900 24 C -0.044 4.044 25 C -0.150 4.150 26 C 0.097 3.903 27 N -0.483 5.483 28 C 0.094 3.906 29 C -0.152 4.152 30 C 0.059 3.941 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.264 0.736 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.138 0.862 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.135 0.865 50 H 0.098 0.902 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 8.989 -23.147 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.054 4.054 3 H 0.077 0.923 4 C 0.294 3.706 5 O -0.395 6.395 6 N -0.337 5.337 7 C -0.062 4.062 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.073 0.927 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.202 1.202 17 N -0.226 5.226 18 C -0.083 4.083 19 C -0.187 4.187 20 C 0.007 3.993 21 H 0.086 0.914 22 O -0.280 6.280 23 C 0.023 3.977 24 C -0.052 4.052 25 C -0.170 4.170 26 C -0.060 4.060 27 N -0.193 5.193 28 C -0.062 4.062 29 C -0.172 4.172 30 C -0.069 4.069 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.156 0.844 47 H 0.175 0.825 48 H 0.174 0.826 49 H 0.153 0.847 50 H 0.116 0.884 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.760 7.165 -23.260 24.351 hybrid contribution 0.292 2.082 0.731 2.225 sum -0.468 9.247 -22.530 24.358 Atomic orbital electron populations 1.22073 0.92561 1.03757 1.02657 1.21846 0.96952 0.95736 0.90819 0.92295 1.20037 0.81333 0.85337 0.83924 1.90681 1.36981 1.25975 1.85898 1.48111 1.50091 1.28267 1.07257 1.21769 0.93921 0.88217 1.02255 1.19261 0.94081 0.93741 0.80100 1.21377 1.04923 1.19053 1.11141 0.92709 1.24931 0.97885 0.94965 0.96292 1.69917 1.39048 1.25988 1.18369 0.86577 0.84010 0.78982 0.77953 1.20305 1.21131 1.20196 1.63392 1.04981 1.53667 1.00543 1.23000 0.97827 0.98177 0.89256 1.23183 0.94492 1.03332 0.97700 1.23520 0.85266 0.96461 0.94046 0.91415 1.88048 1.39787 1.37186 1.63019 1.21343 0.90602 0.91874 0.93838 1.20033 0.94424 0.96536 0.94251 1.22146 0.93511 1.00549 1.00820 1.22804 0.98915 0.92635 0.91651 1.67675 1.25939 1.17469 1.08177 1.22772 0.88096 0.96213 0.99165 1.22074 1.00459 0.97982 0.96714 1.22743 0.87946 1.02985 0.93199 0.91956 0.91306 0.90515 0.93476 0.90915 0.92644 0.95064 0.93817 0.92648 0.89747 0.93419 0.90920 0.89427 0.91935 0.92048 0.84442 0.82462 0.82600 0.84662 0.88409 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.65 37.16 0.32 -1.52 16 2 C 0.06 0.89 1.27 -68.87 -0.09 0.80 16 3 H 0.06 0.82 7.32 -51.93 -0.38 0.44 16 4 C 0.51 10.69 6.61 -10.99 -0.07 10.61 16 5 O -0.52 -13.34 14.92 5.56 0.08 -13.26 16 6 N -0.60 -12.80 2.86 -182.96 -0.52 -13.32 16 7 C 0.08 1.28 8.79 59.85 0.53 1.80 16 8 C 0.25 6.52 5.16 -5.19 -0.03 6.49 16 9 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 10 H 0.05 1.55 7.81 -52.48 -0.41 1.14 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.50 -7.50 4.76 -224.68 -1.07 -8.57 16 18 C 0.04 0.48 5.22 -2.30 -0.01 0.47 16 19 C -0.15 -1.46 6.80 -24.60 -0.17 -1.62 16 20 C 0.07 0.77 3.44 -24.91 -0.09 0.68 16 21 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 22 O -0.36 -4.52 10.05 -35.23 -0.35 -4.87 16 23 C 0.10 0.92 5.95 36.01 0.21 1.13 16 24 C -0.04 -0.44 5.55 -104.31 -0.58 -1.01 16 25 C -0.15 -1.47 9.82 -39.44 -0.39 -1.86 16 26 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 27 N -0.48 -5.35 10.36 -13.25 -0.14 -5.48 16 28 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 29 C -0.15 -1.35 9.82 -39.44 -0.39 -1.74 16 30 C 0.06 0.92 5.23 -2.83 -0.01 0.91 16 31 H 0.06 0.59 6.41 -51.93 -0.33 0.26 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.83 4.75 -51.93 -0.25 0.58 16 34 H 0.05 0.62 7.10 -51.93 -0.37 0.25 16 35 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.05 0.70 5.93 -51.93 -0.31 0.39 16 37 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 0.84 8.11 -51.92 -0.42 0.42 16 41 H 0.05 0.44 7.28 -51.93 -0.38 0.06 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 45 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 46 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 49 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 50 H 0.10 1.83 8.05 -51.93 -0.42 1.41 16 51 H 0.06 1.05 7.26 -51.93 -0.38 0.67 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -35.73 409.15 -9.90 -45.63 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.20 Total: -0.13 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.57 Total: 2.96 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.99 Total: -53.41 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.27 Total: -18.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.73 -9.90 -45.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.025 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds