Wall clock time and date at job start Wed Apr 1 2020 05:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46792 * 2 1 4 4 C 1.50694 * 109.47381 * 120.00052 * 2 1 3 5 5 O 1.21280 * 119.99979 * 120.00156 * 4 2 1 6 6 N 1.34779 * 120.00265 * 300.00427 * 4 2 1 7 7 C 1.46505 * 119.99551 * 359.97438 * 6 4 2 8 8 C 1.46498 * 120.00117 * 179.97438 * 6 4 2 9 9 C 1.50707 * 109.47072 * 89.99996 * 8 6 4 10 10 H 1.08003 * 119.99506 * 359.97438 * 9 8 6 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00027 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99758 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47264 * 60.00100 * 13 11 9 15 15 H 1.48501 * 109.46873 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47413 * 299.99827 * 13 11 9 17 17 N 1.46903 * 109.47185 * 240.00385 * 2 1 3 18 18 C 1.47845 * 110.99915 * 52.71791 * 17 2 1 19 19 C 1.54906 * 104.79478 * 146.36638 * 18 17 2 20 20 C 1.55135 * 101.65428 * 322.92545 * 19 18 17 21 21 H 1.09003 * 110.85729 * 277.20235 * 20 19 18 22 22 O 1.42901 * 110.70792 * 154.03762 * 20 19 18 23 23 C 1.42901 * 113.99628 * 96.40051 * 22 20 19 24 24 C 1.50706 * 109.46695 * 179.97438 * 23 22 20 25 25 C 1.38654 * 120.79211 * 270.25611 * 24 23 22 26 26 C 1.38196 * 119.15994 * 180.26690 * 25 24 23 27 27 N 1.31872 * 120.76788 * 359.47179 * 26 25 24 28 28 C 1.31868 * 121.72272 * 0.28353 * 27 26 25 29 29 C 1.38202 * 120.76846 * 359.96950 * 28 27 26 30 30 C 1.47442 * 110.99977 * 173.55966 * 17 2 1 31 31 H 1.08999 * 109.47560 * 66.88570 * 1 2 3 32 32 H 1.09007 * 109.46777 * 186.88208 * 1 2 3 33 33 H 1.08995 * 109.47542 * 306.87992 * 1 2 3 34 34 H 1.08998 * 109.46684 * 90.00174 * 7 6 4 35 35 H 1.08999 * 109.46831 * 209.99928 * 7 6 4 36 36 H 1.08994 * 109.47282 * 330.00341 * 7 6 4 37 37 H 1.08997 * 109.47082 * 209.99361 * 8 6 4 38 38 H 1.08996 * 109.47242 * 330.00023 * 8 6 4 39 39 H 0.96989 * 119.99941 * 179.97438 * 12 11 9 40 40 H 1.09012 * 110.37015 * 265.18821 * 18 17 2 41 41 H 1.08991 * 110.37543 * 27.42155 * 18 17 2 42 42 H 1.09004 * 110.99004 * 204.83666 * 19 18 17 43 43 H 1.09000 * 110.99310 * 81.01879 * 19 18 17 44 44 H 1.08996 * 109.46974 * 60.00479 * 23 22 20 45 45 H 1.08993 * 109.47324 * 299.99942 * 23 22 20 46 46 H 1.08002 * 120.41637 * 0.04081 * 25 24 23 47 47 H 1.08007 * 119.61864 * 179.75279 * 26 25 24 48 48 H 1.07997 * 119.61624 * 179.97438 * 28 27 26 49 49 H 1.07992 * 120.42211 * 180.02562 * 29 28 27 50 50 H 1.08991 * 109.88950 * 117.33737 * 30 17 2 51 51 H 1.08997 * 110.02514 * 356.22080 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9414 2.5890 8 6 2.1947 -0.9410 3.6507 9 6 3.5224 -0.3579 4.0611 10 1 3.9592 0.4465 3.4879 11 6 4.1794 -0.8515 5.1682 12 7 3.6477 -1.8315 5.8658 13 14 5.8254 -0.1293 5.6765 14 1 5.6616 1.3168 5.9717 15 1 6.3200 -0.8296 6.8890 16 1 6.8037 -0.3014 4.5725 17 7 2.0197 -0.6924 -1.1995 18 6 1.4080 -0.1304 -2.4225 19 6 2.5099 -0.2463 -3.5051 20 6 3.7897 0.0609 -2.6838 21 1 3.9369 1.1362 -2.5824 22 8 4.9339 -0.5494 -3.2840 23 6 5.6818 0.3252 -4.1313 24 6 6.8594 -0.4187 -4.7068 25 6 8.0774 -0.4406 -4.0447 26 6 9.1365 -1.1286 -4.6058 27 7 8.9952 -1.7674 -5.7508 28 6 7.8505 -1.7722 -6.4054 29 6 6.7489 -1.1017 -5.9083 30 6 3.4854 -0.5798 -1.3132 31 1 -0.3634 0.4034 -0.9451 32 1 -0.3633 -1.0203 0.1232 33 1 -0.3634 0.6167 0.8220 34 1 -0.1832 0.6437 2.6221 35 1 1.1227 1.4666 3.5087 36 1 1.0286 1.6001 1.7362 37 1 1.4767 -0.8154 4.4611 38 1 2.3155 -2.0022 3.4334 39 1 4.1101 -2.1789 6.6444 40 1 0.5313 -0.7112 -2.7097 41 1 1.1361 0.9134 -2.2656 42 1 2.3638 0.4938 -4.2918 43 1 2.5449 -1.2535 -3.9203 44 1 6.0384 1.1761 -3.5509 45 1 5.0442 0.6794 -4.9412 46 1 8.1980 0.0766 -3.1043 47 1 10.0898 -1.1472 -4.0984 48 1 7.7728 -2.3063 -7.3409 49 1 5.8141 -1.1097 -6.4488 50 1 3.9387 -1.5694 -1.2578 51 1 3.8743 0.0514 -0.5143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280893790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:46 Heat of formation + Delta-G solvation = -45.535612 kcal Electronic energy + Delta-G solvation = -30598.815296 eV Core-core repulsion = 26497.993944 eV Total energy + Delta-G solvation = -4100.821352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39883 -41.11213 -39.85821 -38.07576 -36.58156 -35.01319 -34.38769 -33.40502 -32.18074 -30.45021 -29.93770 -28.83959 -27.53731 -27.39472 -25.72568 -24.45390 -24.04627 -23.00947 -22.18729 -21.75508 -19.93684 -18.71995 -18.36332 -18.05934 -17.58968 -17.47791 -17.40903 -16.76082 -16.56368 -16.35178 -15.98305 -15.72829 -15.51174 -15.14971 -14.79303 -14.71125 -14.57336 -14.36597 -14.17208 -13.93211 -13.72397 -13.67106 -13.47641 -13.24144 -13.09206 -12.92709 -12.82861 -12.76237 -12.57636 -12.40726 -12.35047 -12.27037 -12.21932 -12.09581 -11.73597 -11.69436 -10.77481 -10.66201 -10.57227 -10.50003 -10.46843 -10.12510 -9.39618 -9.25920 -8.23803 -6.39115 0.11666 0.16267 1.33553 1.38503 1.45607 1.87328 2.21952 2.38821 2.47298 2.91140 3.05261 3.09203 3.47526 3.55013 3.64523 3.72394 3.73240 3.80022 4.01278 4.03929 4.08392 4.10068 4.16895 4.32386 4.36944 4.39089 4.41867 4.42704 4.57362 4.66358 4.67003 4.76773 4.85197 4.86245 4.90575 4.95137 4.96219 4.97770 4.99868 5.01835 5.16610 5.22327 5.29051 5.31560 5.54482 5.72177 5.81931 5.90419 6.04698 6.06379 6.19029 6.68811 6.81664 6.96699 7.27261 7.53382 8.83025 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.002681 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.758560 B =10442.079590 C =12979.992926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 H 0.083 0.917 4 C 0.495 3.505 5 O -0.583 6.583 6 N -0.611 5.611 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.542 4.542 10 H 0.051 0.949 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.527 5.527 18 C 0.044 3.956 19 C -0.138 4.138 20 C 0.074 3.926 21 H 0.093 0.907 22 O -0.391 6.391 23 C 0.099 3.901 24 C -0.060 4.060 25 C -0.164 4.164 26 C 0.083 3.917 27 N -0.510 5.510 28 C 0.085 3.915 29 C -0.152 4.152 30 C 0.062 3.938 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.024 0.976 38 H -0.008 1.008 39 H 0.267 0.733 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.144 0.856 47 H 0.173 0.827 48 H 0.181 0.819 49 H 0.160 0.840 50 H 0.048 0.952 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 12.252 -25.393 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 H 0.100 0.900 4 C 0.283 3.717 5 O -0.463 6.463 6 N -0.343 5.343 7 C -0.066 4.066 8 C 0.140 3.860 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.203 1.203 16 H -0.205 1.205 17 N -0.254 5.254 18 C -0.082 4.082 19 C -0.176 4.176 20 C 0.016 3.984 21 H 0.110 0.890 22 O -0.310 6.310 23 C 0.023 3.977 24 C -0.068 4.068 25 C -0.183 4.183 26 C -0.073 4.073 27 N -0.220 5.220 28 C -0.072 4.072 29 C -0.172 4.172 30 C -0.066 4.066 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.042 0.958 38 H 0.011 0.989 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.129 0.871 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.162 0.838 47 H 0.190 0.810 48 H 0.198 0.802 49 H 0.177 0.823 50 H 0.066 0.934 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.092 10.482 -25.523 27.671 hybrid contribution 0.673 0.988 1.420 1.856 sum -1.419 11.470 -24.104 26.731 Atomic orbital electron populations 1.22099 0.89570 1.03243 1.05433 1.21764 0.98917 0.95443 0.87793 0.89953 1.21275 0.80127 0.84826 0.85436 1.90646 1.39739 1.28958 1.86923 1.48137 1.50613 1.29613 1.05977 1.22109 0.94367 0.86457 1.03641 1.18702 0.93727 0.91535 0.82018 1.21649 1.05930 1.19105 1.11333 0.93029 1.25879 1.01843 0.95260 0.96271 1.70045 1.40771 1.27183 1.18847 0.85484 0.78757 0.79231 0.77449 1.18135 1.20265 1.20539 1.63243 1.04568 1.55336 1.02210 1.23173 0.98058 0.99808 0.87145 1.23152 0.92690 1.03746 0.97973 1.23438 0.86100 0.96998 0.91901 0.88964 1.88013 1.40441 1.38752 1.63819 1.21518 0.90490 0.91406 0.94283 1.20308 0.94691 0.97014 0.94810 1.22338 0.93875 1.00874 1.01260 1.23112 0.99798 0.92675 0.91727 1.67695 1.27123 1.18315 1.08880 1.23256 0.87781 0.96232 0.99918 1.22363 1.01278 0.97095 0.96449 1.22498 0.88649 1.00068 0.95419 0.88198 0.93309 0.88851 0.90563 0.91641 0.88869 0.95784 0.98942 0.92385 0.88671 0.90445 0.87080 0.90863 0.91055 0.89314 0.83801 0.80982 0.80181 0.82251 0.93399 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.65 71.98 0.62 -2.40 16 2 C 0.07 2.09 1.27 44.17 0.06 2.15 16 3 H 0.08 2.01 7.32 -2.39 -0.02 1.99 16 4 C 0.50 21.44 6.61 87.65 0.58 22.02 16 5 O -0.58 -32.15 14.92 -3.03 -0.05 -32.20 16 6 N -0.61 -26.41 2.86 -851.14 -2.43 -28.84 16 7 C 0.08 2.21 8.79 127.77 1.12 3.33 16 8 C 0.26 14.53 5.16 85.64 0.44 14.97 16 9 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 10 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 13 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 N -0.53 -15.37 4.76 -864.76 -4.12 -19.49 16 18 C 0.04 0.78 5.22 86.77 0.45 1.23 16 19 C -0.14 -2.22 6.80 31.98 0.22 -2.01 16 20 C 0.07 1.60 3.44 31.78 0.11 1.71 16 21 H 0.09 1.53 7.82 -2.39 -0.02 1.51 16 22 O -0.39 -9.46 10.05 -148.98 -1.50 -10.96 16 23 C 0.10 1.62 5.95 71.24 0.42 2.04 16 24 C -0.06 -1.12 5.55 -19.66 -0.11 -1.23 16 25 C -0.16 -3.20 9.82 22.36 0.22 -2.98 16 26 C 0.08 1.66 11.18 84.68 0.95 2.61 16 27 N -0.51 -11.22 10.36 -195.85 -2.03 -13.25 16 28 C 0.08 1.48 11.18 84.68 0.95 2.43 16 29 C -0.15 -2.47 9.82 22.36 0.22 -2.25 16 30 C 0.06 2.00 5.23 86.65 0.45 2.46 16 31 H 0.10 1.35 6.41 -2.39 -0.02 1.34 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.09 1.61 4.75 -2.39 -0.01 1.60 16 34 H 0.08 1.79 7.10 -2.39 -0.02 1.77 16 35 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 36 H 0.09 2.00 5.93 -2.39 -0.01 1.99 16 37 H 0.02 1.34 8.07 -2.39 -0.02 1.33 16 38 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 39 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 40 H 0.10 1.50 8.11 -2.38 -0.02 1.48 16 41 H 0.08 0.95 7.28 -2.39 -0.02 0.93 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 45 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 46 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 47 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 48 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 49 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 50 H 0.05 1.97 8.05 -2.39 -0.02 1.95 16 51 H 0.04 1.27 7.26 -2.39 -0.02 1.25 16 Total: -1.00 -85.92 409.15 0.51 -85.41 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.91 Total: 15.54 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.41 Total: 13.28 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -8.29 Total: -118.72 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.54 Total: -43.16 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -85.92 0.51 -85.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.879 kcal (2) G-P(sol) polarization free energy of solvation -85.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds