Wall clock time and date at job start Wed Apr 1 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46592 * 2 1 4 4 C 1.50700 * 109.46884 * 240.00181 * 2 1 3 5 5 O 1.21285 * 119.99926 * 239.99425 * 4 2 1 6 6 N 1.34780 * 120.00400 * 59.99949 * 4 2 1 7 7 C 1.46496 * 119.99526 * 359.97438 * 6 4 2 8 8 C 1.46491 * 120.00021 * 179.97438 * 6 4 2 9 9 C 1.50702 * 109.46957 * 269.99631 * 8 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 N 1.46894 * 109.47244 * 119.99852 * 2 1 3 18 18 C 1.47896 * 110.99993 * 179.87427 * 17 2 1 19 19 C 1.53992 * 107.06049 * 214.15708 * 18 17 2 20 20 C 1.54595 * 105.13998 * 1.22662 * 19 18 17 21 21 H 1.09006 * 110.72687 * 263.42078 * 20 19 18 22 22 O 1.42900 * 110.72553 * 140.31481 * 20 19 18 23 23 C 1.42906 * 113.99745 * 91.45639 * 22 20 19 24 24 C 1.50696 * 109.46746 * 180.02562 * 23 22 20 25 25 C 1.38656 * 120.79056 * 269.71438 * 24 23 22 26 26 C 1.38203 * 119.16341 * 179.79928 * 25 24 23 27 27 N 1.31872 * 120.76280 * 0.48844 * 26 25 24 28 28 C 1.31871 * 121.72878 * 359.74372 * 27 26 25 29 29 C 1.38204 * 120.76113 * 0.02562 * 28 27 26 30 30 C 1.48538 * 110.99965 * 62.47843 * 17 2 1 31 31 H 1.08997 * 109.47361 * 60.00392 * 1 2 3 32 32 H 1.09006 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47015 * 299.99558 * 1 2 3 34 34 H 1.09000 * 109.47583 * 270.00032 * 7 6 4 35 35 H 1.09005 * 109.47610 * 30.00505 * 7 6 4 36 36 H 1.09006 * 109.46979 * 150.00041 * 7 6 4 37 37 H 1.09004 * 109.47166 * 149.99897 * 8 6 4 38 38 H 1.08994 * 109.47507 * 29.99603 * 8 6 4 39 39 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 40 40 H 1.09001 * 109.91998 * 333.51100 * 18 17 2 41 41 H 1.09002 * 109.91947 * 94.60815 * 18 17 2 42 42 H 1.08999 * 110.31251 * 120.14270 * 19 18 17 43 43 H 1.08997 * 110.31145 * 242.31050 * 19 18 17 44 44 H 1.08996 * 109.47187 * 299.99591 * 23 22 20 45 45 H 1.08996 * 109.47159 * 60.00177 * 23 22 20 46 46 H 1.07998 * 120.41703 * 0.02562 * 25 24 23 47 47 H 1.07994 * 119.61884 * 180.20908 * 26 25 24 48 48 H 1.07997 * 119.62245 * 180.02562 * 28 27 26 49 49 H 1.08007 * 120.41944 * 179.97438 * 29 28 27 50 50 H 1.08994 * 110.66659 * 278.15658 * 30 17 2 51 51 H 1.09000 * 110.66429 * 41.29139 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 0.8640 0.9408 -2.5890 8 6 2.1955 -0.9402 -3.6507 9 6 3.5228 -0.3561 -4.0607 10 1 3.9589 0.4486 -3.4873 11 6 4.1835 -0.8531 -5.1641 12 7 3.6526 -1.8332 -5.8621 13 14 5.8324 -0.1342 -5.6677 14 1 6.2085 0.9498 -4.7250 15 1 6.8672 -1.1989 -5.6354 16 1 5.7327 0.4176 -7.0428 17 7 2.0197 -0.6924 1.1994 18 6 3.4982 -0.7148 1.2320 19 6 3.9156 -2.0458 1.8844 20 6 2.5895 -2.7809 2.1862 21 1 2.2842 -2.6171 3.2198 22 8 2.7122 -4.1780 1.9125 23 6 3.1240 -4.9567 3.0378 24 6 3.2206 -6.4063 2.6372 25 6 2.1279 -7.2509 2.7601 26 6 2.2527 -8.5734 2.3787 27 7 3.3961 -9.0358 1.9119 28 6 4.4570 -8.2627 1.7857 29 6 4.4059 -6.9285 2.1425 30 6 1.5930 -2.1152 1.2041 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1838 0.6426 -2.6225 35 1 1.0272 1.5997 -1.7360 36 1 1.1218 1.4665 -3.5085 37 1 1.4776 -0.8151 -4.4614 38 1 2.3171 -2.0014 -3.4337 39 1 4.1173 -2.1827 -6.6386 40 1 3.8929 -0.6586 0.2176 41 1 3.8693 0.1236 1.8216 42 1 4.5239 -2.6308 1.1946 43 1 4.4633 -1.8590 2.8080 44 1 4.0980 -4.6099 3.3828 45 1 2.3947 -4.8491 3.8406 46 1 1.1900 -6.8792 3.1456 47 1 1.4053 -9.2369 2.4681 48 1 5.3764 -8.6770 1.3991 49 1 5.2783 -6.3005 2.0373 50 1 0.5709 -2.2090 1.5707 51 1 1.6871 -2.5483 0.2083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280893796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:50 Heat of formation + Delta-G solvation = -15.043096 kcal Electronic energy + Delta-G solvation = -31232.475174 eV Core-core repulsion = 27132.976076 eV Total energy + Delta-G solvation = -4099.499098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45953 -40.24130 -38.40739 -36.68248 -34.90495 -33.64878 -32.92800 -32.15086 -31.38052 -28.75392 -28.64524 -27.44594 -26.69010 -26.05572 -23.91426 -23.64168 -22.45144 -22.18585 -20.83268 -20.81369 -18.46098 -17.24764 -17.00171 -16.65593 -16.54374 -16.39255 -16.05720 -15.77683 -15.26746 -14.71110 -14.66194 -14.38057 -14.18676 -13.94201 -13.82987 -13.77866 -13.60151 -13.39950 -12.99786 -12.50835 -12.31613 -12.24412 -12.12655 -11.99016 -11.73801 -11.45219 -11.37730 -11.31522 -11.21332 -11.00584 -10.93440 -10.81427 -10.61783 -10.32792 -10.19128 -9.89397 -9.66191 -9.61817 -9.58479 -9.51767 -9.31334 -8.46815 -7.90495 -7.65051 -6.07221 -4.12222 0.96738 0.97692 3.26948 3.29231 3.35123 3.37164 3.39204 3.80596 3.93330 4.22594 4.30255 4.41915 4.49513 4.53845 4.78085 4.81822 4.87663 4.94673 5.04975 5.08513 5.15682 5.17326 5.25049 5.27313 5.30564 5.43994 5.47641 5.58172 5.60510 5.66625 5.74055 5.78480 5.84645 5.91309 5.94422 6.06469 6.09471 6.12505 6.19816 6.25691 6.31562 6.37727 6.50960 6.87578 6.96597 7.08767 7.25794 7.41359 7.49880 7.78912 7.88574 8.19986 8.36017 8.85475 9.01943 9.52963 11.00832 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008991 B = 0.002971 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.523113 B = 9420.883186 C =11241.130575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 H 0.103 0.897 4 C 0.477 3.523 5 O -0.532 6.532 6 N -0.597 5.597 7 C 0.080 3.920 8 C 0.244 3.756 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.490 5.490 18 C 0.032 3.968 19 C -0.144 4.144 20 C 0.092 3.908 21 H 0.069 0.931 22 O -0.364 6.364 23 C 0.101 3.899 24 C -0.042 4.042 25 C -0.153 4.153 26 C 0.094 3.906 27 N -0.484 5.484 28 C 0.096 3.904 29 C -0.150 4.150 30 C 0.024 3.976 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.135 0.865 47 H 0.156 0.844 48 H 0.157 0.843 49 H 0.137 0.863 50 H 0.076 0.924 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -2.217 19.921 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.062 4.062 3 H 0.121 0.879 4 C 0.262 3.738 5 O -0.411 6.411 6 N -0.329 5.329 7 C -0.064 4.064 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.214 5.214 18 C -0.095 4.095 19 C -0.182 4.182 20 C 0.033 3.967 21 H 0.087 0.913 22 O -0.282 6.282 23 C 0.024 3.976 24 C -0.051 4.051 25 C -0.173 4.173 26 C -0.063 4.063 27 N -0.193 5.193 28 C -0.060 4.060 29 C -0.170 4.170 30 C -0.103 4.103 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.153 0.847 47 H 0.174 0.826 48 H 0.175 0.825 49 H 0.155 0.845 50 H 0.094 0.906 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.133 -3.512 19.821 20.774 hybrid contribution 1.295 1.130 -0.741 1.872 sum -3.838 -2.382 19.080 19.607 Atomic orbital electron populations 1.22012 0.92499 1.03020 1.03244 1.21950 0.97278 0.99168 0.87776 0.87895 1.21397 0.81370 0.85696 0.85325 1.90644 1.37958 1.26657 1.85791 1.48262 1.49096 1.27956 1.07582 1.21812 0.93823 0.88187 1.02545 1.19290 0.94220 0.93725 0.80288 1.21432 1.04730 1.18911 1.11342 0.92554 1.24943 0.97959 0.94931 0.96288 1.69944 1.38874 1.25978 1.18430 0.86452 0.83789 0.79018 0.78210 1.19841 1.20869 1.20919 1.65186 1.09295 1.13089 1.33854 1.22843 0.88032 0.96749 1.01894 1.22787 0.97936 0.96850 1.00654 1.22939 0.95441 0.79997 0.98281 0.91282 1.88076 1.88519 1.17974 1.33650 1.21299 0.99842 0.87221 0.89230 1.20051 0.93699 0.94867 0.96455 1.22076 0.99081 0.94962 1.01194 1.22760 0.95477 0.93608 0.94406 1.67664 0.99852 1.39188 1.12641 1.22785 0.97056 0.90422 0.95773 1.22124 0.98835 0.97039 0.99017 1.23445 0.97085 0.87991 1.01819 0.90493 0.92302 0.91250 0.93307 0.92197 0.90845 0.95112 0.93907 0.92751 0.90895 0.91209 0.90043 0.91785 0.92097 0.92134 0.84671 0.82637 0.82535 0.84550 0.90601 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.74 37.16 0.32 -1.49 16 2 C 0.05 0.76 2.05 -68.87 -0.14 0.62 16 3 H 0.10 1.42 7.40 -51.93 -0.38 1.04 16 4 C 0.48 9.55 5.96 -10.98 -0.07 9.48 16 5 O -0.53 -12.68 11.33 5.55 0.06 -12.62 16 6 N -0.60 -12.38 2.86 -182.96 -0.52 -12.90 16 7 C 0.08 1.23 8.80 59.84 0.53 1.76 16 8 C 0.24 6.36 5.16 -5.20 -0.03 6.34 16 9 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.49 -7.24 5.30 -223.89 -1.19 -8.43 16 18 C 0.03 0.50 6.00 -2.76 -0.02 0.48 16 19 C -0.14 -2.02 6.69 -25.38 -0.17 -2.19 16 20 C 0.09 1.24 3.51 -24.87 -0.09 1.16 16 21 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 22 O -0.36 -5.31 10.07 -35.23 -0.35 -5.66 16 23 C 0.10 1.08 5.98 36.00 0.22 1.30 16 24 C -0.04 -0.48 5.55 -104.32 -0.58 -1.06 16 25 C -0.15 -1.58 9.82 -39.44 -0.39 -1.97 16 26 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 27 N -0.48 -5.99 10.36 -13.25 -0.14 -6.13 16 28 C 0.10 1.08 11.18 -17.55 -0.20 0.88 16 29 C -0.15 -1.67 9.82 -39.44 -0.39 -2.06 16 30 C 0.02 0.37 4.84 -1.89 -0.01 0.36 16 31 H 0.08 0.85 4.53 -51.93 -0.24 0.62 16 32 H 0.06 0.76 7.00 -51.93 -0.36 0.39 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 35 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 36 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 38 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.07 1.39 5.64 -51.93 -0.29 1.09 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 45 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 46 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 48 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 50 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 51 H 0.10 1.89 5.16 -51.93 -0.27 1.62 16 LS Contribution 403.02 15.07 6.07 6.07 Total: -1.00 -34.60 403.02 -9.98 -44.58 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.01 Total: 3.26 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.62 Total: 0.89 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -1.11 Total: -53.39 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.60 -9.98 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.534 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds