Wall clock time and date at job start Wed Apr 1 2020 05:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46592 * 2 1 4 4 C 1.50700 * 109.46884 * 240.00181 * 2 1 3 5 5 O 1.21285 * 119.99926 * 239.99425 * 4 2 1 6 6 N 1.34780 * 120.00400 * 59.99949 * 4 2 1 7 7 C 1.46496 * 119.99526 * 359.97438 * 6 4 2 8 8 C 1.46491 * 120.00021 * 179.97438 * 6 4 2 9 9 C 1.50702 * 109.46957 * 269.99631 * 8 6 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 6 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 6 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 N 1.46894 * 109.47244 * 119.99852 * 2 1 3 18 18 C 1.47896 * 110.99993 * 179.87427 * 17 2 1 19 19 C 1.53992 * 107.06049 * 214.15708 * 18 17 2 20 20 C 1.54595 * 105.13998 * 1.22662 * 19 18 17 21 21 H 1.09006 * 110.72687 * 263.42078 * 20 19 18 22 22 O 1.42900 * 110.72553 * 140.31481 * 20 19 18 23 23 C 1.42906 * 113.99745 * 91.45639 * 22 20 19 24 24 C 1.50696 * 109.46746 * 180.02562 * 23 22 20 25 25 C 1.38656 * 120.79056 * 269.71438 * 24 23 22 26 26 C 1.38203 * 119.16341 * 179.79928 * 25 24 23 27 27 N 1.31872 * 120.76280 * 0.48844 * 26 25 24 28 28 C 1.31871 * 121.72878 * 359.74372 * 27 26 25 29 29 C 1.38204 * 120.76113 * 0.02562 * 28 27 26 30 30 C 1.48538 * 110.99965 * 62.47843 * 17 2 1 31 31 H 1.08997 * 109.47361 * 60.00392 * 1 2 3 32 32 H 1.09006 * 109.47039 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47015 * 299.99558 * 1 2 3 34 34 H 1.09000 * 109.47583 * 270.00032 * 7 6 4 35 35 H 1.09005 * 109.47610 * 30.00505 * 7 6 4 36 36 H 1.09006 * 109.46979 * 150.00041 * 7 6 4 37 37 H 1.09004 * 109.47166 * 149.99897 * 8 6 4 38 38 H 1.08994 * 109.47507 * 29.99603 * 8 6 4 39 39 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 40 40 H 1.09001 * 109.91998 * 333.51100 * 18 17 2 41 41 H 1.09002 * 109.91947 * 94.60815 * 18 17 2 42 42 H 1.08999 * 110.31251 * 120.14270 * 19 18 17 43 43 H 1.08997 * 110.31145 * 242.31050 * 19 18 17 44 44 H 1.08996 * 109.47187 * 299.99591 * 23 22 20 45 45 H 1.08996 * 109.47159 * 60.00177 * 23 22 20 46 46 H 1.07998 * 120.41703 * 0.02562 * 25 24 23 47 47 H 1.07994 * 119.61884 * 180.20908 * 26 25 24 48 48 H 1.07997 * 119.62245 * 180.02562 * 28 27 26 49 49 H 1.08007 * 120.41944 * 179.97438 * 29 28 27 50 50 H 1.08994 * 110.66659 * 278.15658 * 30 17 2 51 51 H 1.09000 * 110.66429 * 41.29139 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4547 7 6 0.8640 0.9408 -2.5890 8 6 2.1955 -0.9402 -3.6507 9 6 3.5228 -0.3561 -4.0607 10 1 3.9589 0.4486 -3.4873 11 6 4.1835 -0.8531 -5.1641 12 7 3.6526 -1.8332 -5.8621 13 14 5.8324 -0.1342 -5.6677 14 1 6.2085 0.9498 -4.7250 15 1 6.8672 -1.1989 -5.6354 16 1 5.7327 0.4176 -7.0428 17 7 2.0197 -0.6924 1.1994 18 6 3.4982 -0.7148 1.2320 19 6 3.9156 -2.0458 1.8844 20 6 2.5895 -2.7809 2.1862 21 1 2.2842 -2.6171 3.2198 22 8 2.7122 -4.1780 1.9125 23 6 3.1240 -4.9567 3.0378 24 6 3.2206 -6.4063 2.6372 25 6 2.1279 -7.2509 2.7601 26 6 2.2527 -8.5734 2.3787 27 7 3.3961 -9.0358 1.9119 28 6 4.4570 -8.2627 1.7857 29 6 4.4059 -6.9285 2.1425 30 6 1.5930 -2.1152 1.2041 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.1838 0.6426 -2.6225 35 1 1.0272 1.5997 -1.7360 36 1 1.1218 1.4665 -3.5085 37 1 1.4776 -0.8151 -4.4614 38 1 2.3171 -2.0014 -3.4337 39 1 4.1173 -2.1827 -6.6386 40 1 3.8929 -0.6586 0.2176 41 1 3.8693 0.1236 1.8216 42 1 4.5239 -2.6308 1.1946 43 1 4.4633 -1.8590 2.8080 44 1 4.0980 -4.6099 3.3828 45 1 2.3947 -4.8491 3.8406 46 1 1.1900 -6.8792 3.1456 47 1 1.4053 -9.2369 2.4681 48 1 5.3764 -8.6770 1.3991 49 1 5.2783 -6.3005 2.0373 50 1 0.5709 -2.2090 1.5707 51 1 1.6871 -2.5483 0.2083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280893796.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:49 Heat of formation + Delta-G solvation = -39.884995 kcal Electronic energy + Delta-G solvation = -31233.552399 eV Core-core repulsion = 27132.976076 eV Total energy + Delta-G solvation = -4100.576323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76318 -41.13804 -39.61138 -37.90510 -36.55959 -35.07290 -34.37566 -33.50640 -32.18654 -30.23203 -29.77332 -29.01219 -27.66866 -27.43481 -25.63730 -24.45874 -23.89944 -23.04954 -22.19072 -21.92836 -19.95481 -18.75160 -18.25313 -18.00851 -17.72856 -17.52679 -17.30042 -16.81845 -16.55476 -16.46403 -15.80767 -15.70776 -15.41121 -15.11401 -14.82136 -14.78957 -14.70639 -14.55722 -14.40021 -14.17211 -13.67044 -13.46048 -13.35511 -13.17298 -13.00584 -12.90111 -12.73180 -12.64416 -12.50640 -12.46189 -12.33267 -12.23303 -12.11730 -11.99690 -11.71085 -11.42300 -11.00983 -10.76599 -10.69504 -10.56596 -10.50664 -10.13031 -9.42017 -9.26751 -8.26480 -6.41794 0.11810 0.15664 1.31926 1.34370 1.46076 1.78585 2.28505 2.43045 2.44311 2.86825 3.02809 3.18192 3.53407 3.58402 3.64665 3.73932 3.75220 3.83407 4.06983 4.08894 4.12763 4.16444 4.19430 4.33045 4.40573 4.40977 4.44172 4.54708 4.63071 4.66201 4.71772 4.82307 4.84285 4.87554 4.91238 4.95357 4.97966 5.00014 5.02347 5.07709 5.15938 5.19267 5.30228 5.31739 5.52527 5.69821 5.71737 5.81048 5.83124 6.01971 6.28688 6.65762 6.77195 6.95754 7.24352 7.45272 8.80491 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008991 B = 0.002971 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.523113 B = 9420.883186 C =11241.130575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.124 0.876 4 C 0.466 3.534 5 O -0.579 6.579 6 N -0.607 5.607 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.539 4.539 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.266 1.266 15 H -0.283 1.283 16 H -0.267 1.267 17 N -0.473 5.473 18 C 0.031 3.969 19 C -0.142 4.142 20 C 0.097 3.903 21 H 0.104 0.896 22 O -0.396 6.396 23 C 0.099 3.901 24 C -0.060 4.060 25 C -0.155 4.155 26 C 0.085 3.915 27 N -0.510 5.510 28 C 0.083 3.917 29 C -0.163 4.163 30 C 0.023 3.977 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.020 0.980 38 H -0.008 1.008 39 H 0.267 0.733 40 H 0.028 0.972 41 H 0.097 0.903 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.159 0.841 47 H 0.182 0.818 48 H 0.174 0.826 49 H 0.144 0.856 50 H 0.096 0.904 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 -0.080 22.383 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.053 4.053 3 H 0.141 0.859 4 C 0.254 3.746 5 O -0.461 6.461 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.190 1.190 15 H -0.209 1.209 16 H -0.192 1.192 17 N -0.196 5.196 18 C -0.096 4.096 19 C -0.180 4.180 20 C 0.039 3.961 21 H 0.122 0.878 22 O -0.315 6.315 23 C 0.023 3.977 24 C -0.068 4.068 25 C -0.174 4.174 26 C -0.072 4.072 27 N -0.220 5.220 28 C -0.073 4.073 29 C -0.183 4.183 30 C -0.105 4.105 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.010 0.990 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.177 0.823 47 H 0.199 0.801 48 H 0.191 0.809 49 H 0.162 0.838 50 H 0.115 0.885 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.947 -1.340 22.303 23.121 hybrid contribution 1.504 0.403 -1.497 2.160 sum -4.443 -0.938 20.806 21.296 Atomic orbital electron populations 1.22029 0.89735 1.02964 1.05353 1.22112 0.99296 0.99104 0.84741 0.85853 1.22499 0.80399 0.85268 0.86398 1.90637 1.39933 1.28906 1.86575 1.48283 1.49959 1.29354 1.06301 1.22125 0.94252 0.86575 1.03766 1.18686 0.93685 0.91494 0.82182 1.21690 1.05742 1.18847 1.11458 0.93013 1.25886 1.01901 0.95226 0.96285 1.70067 1.40610 1.27220 1.18964 0.85365 0.78652 0.78266 0.78512 1.19004 1.20910 1.19237 1.65288 1.08759 1.12659 1.32883 1.22856 0.88415 0.98508 0.99871 1.22774 0.98340 0.95805 1.01078 1.22979 0.94264 0.79541 0.99296 0.87786 1.88043 1.88819 1.18652 1.35997 1.21492 1.01242 0.86233 0.88696 1.20338 0.94104 0.95603 0.96785 1.22372 0.99714 0.94742 1.00609 1.23255 0.95739 0.94400 0.93795 1.67689 1.00714 1.40005 1.13597 1.23121 0.97656 0.90658 0.95904 1.22332 0.99473 0.97282 0.99239 1.23400 0.98935 0.88222 0.99937 0.89261 0.93484 0.88181 0.90595 0.88577 0.91751 0.96178 0.99012 0.92445 0.95394 0.88503 0.93615 0.88428 0.90961 0.89432 0.82329 0.80127 0.80893 0.83781 0.88534 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.74 71.98 0.63 -2.39 16 2 C 0.06 1.70 2.05 44.17 0.09 1.79 16 3 H 0.12 3.02 7.40 -2.39 -0.02 3.00 16 4 C 0.47 19.18 5.96 87.66 0.52 19.70 16 5 O -0.58 -29.49 11.33 -3.05 -0.03 -29.53 16 6 N -0.61 -25.78 2.86 -851.14 -2.43 -28.21 16 7 C 0.07 2.17 8.80 127.77 1.12 3.30 16 8 C 0.26 14.39 5.16 85.64 0.44 14.83 16 9 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.34 5.46 84.66 0.46 0.81 16 12 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 13 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 N -0.47 -13.12 5.30 -862.26 -4.57 -17.70 16 18 C 0.03 0.94 6.00 86.45 0.52 1.46 16 19 C -0.14 -3.89 6.69 31.47 0.21 -3.68 16 20 C 0.10 2.49 3.51 31.80 0.11 2.61 16 21 H 0.10 1.95 7.88 -2.38 -0.02 1.93 16 22 O -0.40 -11.43 10.07 -148.98 -1.50 -12.93 16 23 C 0.10 1.98 5.98 71.23 0.43 2.41 16 24 C -0.06 -1.33 5.55 -19.67 -0.11 -1.44 16 25 C -0.15 -3.04 9.82 22.36 0.22 -2.82 16 26 C 0.08 1.74 11.18 84.68 0.95 2.69 16 27 N -0.51 -12.71 10.36 -195.85 -2.03 -14.74 16 28 C 0.08 1.90 11.18 84.68 0.95 2.84 16 29 C -0.16 -3.71 9.82 22.36 0.22 -3.49 16 30 C 0.02 0.68 4.84 86.65 0.42 1.10 16 31 H 0.09 1.66 4.53 -2.39 -0.01 1.65 16 32 H 0.05 1.12 7.00 -2.38 -0.02 1.10 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.81 6.95 -2.39 -0.02 1.79 16 35 H 0.10 2.09 6.01 -2.38 -0.01 2.08 16 36 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 37 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 38 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 39 H 0.27 15.41 8.31 -92.70 -0.77 14.63 16 40 H 0.03 1.10 5.64 -2.39 -0.01 1.08 16 41 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 43 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 46 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 47 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 48 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 49 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 50 H 0.10 2.43 7.67 -2.39 -0.02 2.41 16 51 H 0.05 2.00 5.16 -2.39 -0.01 1.98 16 Total: -1.00 -81.68 403.02 0.09 -81.60 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.92 Total: 22.51 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 7.42 Total: 8.41 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -8.75 Total: -117.73 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.53 Total: -42.45 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -81.68 0.09 -81.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280893796.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.712 kcal (2) G-P(sol) polarization free energy of solvation -81.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds