Wall clock time and date at job start Wed Apr 1 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47398 * 5.41044 * 3 2 1 5 5 C 1.37095 * 120.00409 * 89.99985 * 4 3 2 6 6 H 1.07991 * 120.00109 * 157.33963 * 5 4 3 7 7 C 1.38948 * 119.99563 * 337.33652 * 5 4 3 8 8 N 1.31409 * 120.00390 * 4.68469 * 7 5 4 9 9 Si 1.86799 * 119.99810 * 184.67998 * 7 5 4 10 10 H 1.48503 * 109.47365 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47321 * 300.00049 * 9 7 5 12 12 H 1.48499 * 109.47238 * 60.00177 * 9 7 5 13 13 C 1.34775 * 119.99595 * 269.99756 * 4 3 2 14 14 O 1.21299 * 120.00351 * 354.36113 * 13 4 3 15 15 C 1.50705 * 120.00115 * 174.35934 * 13 4 3 16 16 H 1.09002 * 110.85345 * 320.75150 * 15 13 4 17 17 C 1.54623 * 110.96792 * 84.53807 * 15 13 4 18 18 C 1.51283 * 104.19439 * 142.92023 * 17 15 13 19 19 O 1.21280 * 124.93860 * 163.78152 * 18 17 15 20 20 N 1.34417 * 110.11667 * 343.74307 * 18 17 15 21 21 C 1.46496 * 124.35075 * 179.57105 * 20 18 17 22 22 C 1.53002 * 109.47108 * 93.34263 * 21 20 18 23 23 H 1.09003 * 110.36305 * 57.63844 * 22 21 20 24 24 C 1.54377 * 110.41096 * 295.28569 * 22 21 20 25 25 C 1.54262 * 105.06027 * 217.36833 * 24 22 21 26 26 C 1.54384 * 105.05917 * 359.97438 * 25 24 22 27 27 N 1.48554 * 110.41053 * 179.97438 * 22 21 20 28 28 C 1.46896 * 111.00328 * 277.81991 * 27 22 21 29 29 C 1.53006 * 109.47471 * 170.83242 * 28 27 22 30 30 C 1.46761 * 111.29806 * 359.59701 * 20 18 17 31 31 H 4.40638 * 5.51295 * 180.02562 * 4 1 2 32 32 H 1.09003 * 109.47388 * 245.40641 * 3 2 1 33 33 H 1.09005 * 109.47259 * 125.40725 * 3 2 1 34 34 H 0.97003 * 120.00464 * 174.97639 * 8 7 5 35 35 H 1.09006 * 110.48576 * 261.59429 * 17 15 13 36 36 H 1.08997 * 110.48656 * 24.24093 * 17 15 13 37 37 H 1.08997 * 109.47254 * 213.34493 * 21 20 18 38 38 H 1.09003 * 109.47114 * 333.34522 * 21 20 18 39 39 H 1.09000 * 110.32581 * 336.26304 * 24 22 21 40 40 H 1.09000 * 110.31959 * 98.47353 * 24 22 21 41 41 H 1.08999 * 110.32550 * 118.89431 * 25 24 22 42 42 H 1.08999 * 110.32245 * 241.00146 * 25 24 22 43 43 H 1.08999 * 110.41060 * 142.63176 * 26 25 24 44 44 H 1.08996 * 110.41454 * 265.07469 * 26 25 24 45 45 H 1.08997 * 109.47118 * 290.83486 * 28 27 22 46 46 H 1.09004 * 109.47098 * 50.83493 * 28 27 22 47 47 H 1.09001 * 109.47007 * 59.99577 * 29 28 27 48 48 H 1.09000 * 109.47274 * 179.97438 * 29 28 27 49 49 H 1.09007 * 109.46653 * 300.00383 * 29 28 27 50 50 H 1.09003 * 110.24781 * 258.00945 * 30 20 18 51 51 H 1.09004 * 110.24474 * 136.01215 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3742 -0.1302 5 6 3.3637 -1.9056 -1.3731 6 1 4.0430 -2.7372 -1.4881 7 6 2.7216 -1.3741 -2.4848 8 7 1.9672 -0.3055 -2.3595 9 14 2.9306 -2.1788 -4.1576 10 1 2.1489 -1.4251 -5.1706 11 1 4.3669 -2.1704 -4.5349 12 1 2.4428 -3.5800 -4.0973 13 6 3.3600 -2.1165 0.9719 14 8 3.2564 -1.6160 2.0719 15 6 3.7403 -3.5686 0.8377 16 1 3.1782 -4.0442 0.0339 17 6 5.2625 -3.7236 0.6153 18 6 5.6253 -4.9719 1.3891 19 8 6.6547 -5.5986 1.2535 20 7 4.6411 -5.2848 2.2495 21 6 4.6651 -6.4420 3.1476 22 6 5.2309 -6.0219 4.5057 23 1 4.6371 -5.2121 4.9299 24 6 6.7064 -5.5907 4.3641 25 6 7.3990 -6.1061 5.6425 26 6 6.2835 -6.8048 6.4492 27 7 5.2641 -7.1811 5.4341 28 6 3.9510 -7.3945 6.0570 29 6 3.9587 -8.7194 6.8223 30 6 3.5391 -4.3185 2.1731 31 1 -1.0498 -0.0003 -0.0002 32 1 3.0091 0.4285 0.9344 33 1 3.0090 0.5963 -0.8376 34 1 1.5779 0.1084 -3.1456 35 1 5.4819 -3.8546 -0.4444 36 1 5.7960 -2.8600 1.0124 37 1 3.6518 -6.8219 3.2779 38 1 5.2933 -7.2223 2.7180 39 1 7.1518 -6.0491 3.4812 40 1 6.7795 -4.5047 4.3055 41 1 8.1844 -6.8175 5.3871 42 1 7.8137 -5.2732 6.2105 43 1 6.6729 -7.6940 6.9450 44 1 5.8553 -6.1181 7.1794 45 1 3.7390 -6.5777 6.7468 46 1 3.1830 -7.4259 5.2841 47 1 4.7267 -8.6881 7.5951 48 1 2.9845 -8.8775 7.2848 49 1 4.1707 -9.5363 6.1323 50 1 3.5905 -3.6208 3.0090 51 1 2.5810 -4.8384 2.1732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282058402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:05 Heat of formation + Delta-G solvation = 8.320734 kcal Electronic energy + Delta-G solvation = -31556.790675 eV Core-core repulsion = 27458.304709 eV Total energy + Delta-G solvation = -4098.485966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55286 -39.21653 -38.43765 -36.04506 -35.14634 -33.73672 -32.91491 -31.86505 -31.42060 -29.62889 -28.77548 -27.38998 -26.65536 -25.40098 -24.69662 -23.01616 -22.20027 -20.73673 -20.42625 -19.34129 -19.03701 -17.81120 -17.12877 -16.68943 -16.30779 -16.13358 -15.68719 -15.33349 -14.87217 -14.74670 -14.46162 -14.23515 -14.06324 -13.98974 -13.68495 -13.29874 -13.10004 -13.05270 -12.80505 -12.70939 -12.36413 -12.10901 -12.08285 -11.99319 -11.69883 -11.56273 -11.41766 -11.35279 -11.23058 -11.03500 -10.98466 -10.85668 -10.78238 -10.61627 -10.55360 -10.52228 -9.59629 -9.57030 -9.31353 -8.79212 -8.72076 -8.57629 -8.38689 -8.02178 -6.42735 -4.14649 2.83193 3.01329 3.06750 3.13809 3.13899 3.55661 3.80783 3.89532 4.04484 4.26744 4.45099 4.56156 4.61014 4.79800 4.84807 4.89245 4.92857 4.98039 5.08725 5.10966 5.25218 5.26820 5.34503 5.41344 5.44779 5.52766 5.55648 5.64475 5.67691 5.71008 5.76657 5.81072 5.84141 5.89476 5.98844 6.01134 6.05504 6.11296 6.20301 6.28608 6.44980 6.60593 6.66363 6.75736 6.88807 6.99253 7.17494 7.24710 7.31557 7.56849 8.19755 8.42028 8.89290 8.95734 9.27670 9.66963 10.50306 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002713 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.983968 B =10318.246738 C =11025.599792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.086 4.086 3 C 0.237 3.763 4 N -0.433 5.433 5 C -0.342 4.342 6 H 0.101 0.899 7 C 0.042 3.958 8 N -0.859 5.859 9 Si 0.924 3.076 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.272 1.272 13 C 0.470 3.530 14 O -0.601 6.601 15 C -0.100 4.100 16 H 0.110 0.890 17 C -0.137 4.137 18 C 0.524 3.476 19 O -0.537 6.537 20 N -0.616 5.616 21 C 0.144 3.856 22 C 0.046 3.954 23 H 0.055 0.945 24 C -0.121 4.121 25 C -0.124 4.124 26 C 0.036 3.964 27 N -0.506 5.506 28 C 0.037 3.963 29 C -0.144 4.144 30 C 0.114 3.886 31 H 0.196 0.804 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.075 0.925 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -10.090 11.319 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.087 4.087 3 C 0.115 3.885 4 N -0.149 5.149 5 C -0.469 4.469 6 H 0.119 0.881 7 C -0.164 4.164 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.208 1.208 11 H -0.197 1.197 12 H -0.197 1.197 13 C 0.258 3.742 14 O -0.488 6.488 15 C -0.122 4.122 16 H 0.128 0.872 17 C -0.177 4.177 18 C 0.312 3.688 19 O -0.415 6.415 20 N -0.350 5.350 21 C 0.021 3.979 22 C -0.063 4.063 23 H 0.073 0.927 24 C -0.159 4.159 25 C -0.162 4.162 26 C -0.092 4.092 27 N -0.231 5.231 28 C -0.091 4.091 29 C -0.202 4.202 30 C -0.009 4.009 31 H 0.213 0.787 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.850 -10.618 11.395 16.044 hybrid contribution -0.736 0.487 -0.648 1.095 sum 3.115 -10.131 10.746 15.094 Atomic orbital electron populations 1.24156 0.95317 1.02532 1.08688 1.23105 0.94269 0.97862 0.93501 1.18260 0.84105 0.85039 1.01057 1.43603 1.55562 1.10417 1.05345 1.19638 1.26057 1.18356 0.82892 0.88101 1.25397 0.94320 0.96356 1.00374 1.69935 1.30409 1.18912 1.30362 0.86035 0.78601 0.79368 0.80995 1.20800 1.19666 1.19681 1.19630 0.83155 0.87150 0.84296 1.90546 1.59075 1.73051 1.26132 1.21938 0.96337 0.95943 0.98006 0.87211 1.22258 0.96009 0.96952 1.02515 1.20968 0.82489 0.85734 0.79602 1.90664 1.25885 1.56568 1.68377 1.48253 1.20625 1.27296 1.38864 1.21150 1.01540 0.87236 0.87990 1.23055 0.97492 0.91933 0.93817 0.92653 1.22392 0.93734 1.00834 0.98980 1.22292 0.97789 0.99822 0.96315 1.23118 0.93098 0.99063 0.93915 1.65273 1.06128 1.37346 1.14330 1.22286 0.91437 0.97529 0.97889 1.21720 1.01286 0.97226 0.99963 1.22085 0.89127 0.90709 0.98936 0.78730 0.91786 0.86439 0.91634 0.87426 0.87783 0.90777 0.89143 0.89381 0.91710 0.91070 0.91575 0.90188 0.93938 0.94595 0.90674 0.92915 0.92419 0.91825 0.89210 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.28 19.25 29.55 0.57 -5.71 16 2 C -0.09 -2.02 11.26 -37.13 -0.42 -2.44 16 3 C 0.24 5.49 5.22 -6.83 -0.04 5.45 16 4 N -0.43 -9.96 2.58 -117.93 -0.30 -10.27 16 5 C -0.34 -7.82 8.77 -14.94 -0.13 -7.95 16 6 H 0.10 2.13 5.68 -52.49 -0.30 1.84 16 7 C 0.04 0.96 5.38 -17.47 -0.09 0.87 16 8 N -0.86 -20.84 8.36 55.50 0.46 -20.37 16 9 Si 0.92 18.38 29.56 -169.99 -5.02 13.36 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 13 C 0.47 10.14 6.78 -10.98 -0.07 10.06 16 14 O -0.60 -14.24 15.11 5.54 0.08 -14.16 16 15 C -0.10 -1.76 2.51 -90.14 -0.23 -1.98 16 16 H 0.11 1.92 7.42 -51.93 -0.39 1.53 16 17 C -0.14 -2.25 5.96 -26.74 -0.16 -2.41 16 18 C 0.52 8.69 7.44 -10.86 -0.08 8.60 16 19 O -0.54 -10.13 15.96 5.56 0.09 -10.04 16 20 N -0.62 -8.99 2.80 -172.42 -0.48 -9.47 16 21 C 0.14 1.82 5.54 -4.04 -0.02 1.79 16 22 C 0.05 0.56 2.54 -66.07 -0.17 0.39 16 23 H 0.06 0.71 7.99 -51.93 -0.42 0.29 16 24 C -0.12 -1.55 5.81 -25.35 -0.15 -1.70 16 25 C -0.12 -1.29 7.00 -25.35 -0.18 -1.47 16 26 C 0.04 0.35 5.90 -2.10 -0.01 0.34 16 27 N -0.51 -5.42 5.03 -222.01 -1.12 -6.54 16 28 C 0.04 0.34 5.49 -3.82 -0.02 0.32 16 29 C -0.14 -1.12 10.02 37.16 0.37 -0.75 16 30 C 0.11 1.75 6.82 -3.12 -0.02 1.73 16 31 H 0.20 3.49 7.80 -54.10 -0.42 3.06 16 32 H 0.06 1.44 7.35 -51.93 -0.38 1.06 16 33 H 0.12 2.78 6.39 -51.93 -0.33 2.45 16 34 H 0.27 6.42 8.32 -40.82 -0.34 6.08 16 35 H 0.11 1.71 7.33 -51.93 -0.38 1.33 16 36 H 0.10 1.75 7.89 -51.93 -0.41 1.34 16 37 H 0.07 0.82 7.28 -51.93 -0.38 0.44 16 38 H 0.09 1.24 7.81 -51.93 -0.41 0.84 16 39 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.70 7.84 -51.93 -0.41 0.29 16 44 H 0.04 0.40 7.76 -51.93 -0.40 0.00 16 45 H 0.04 0.33 7.79 -51.93 -0.40 -0.07 16 46 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 47 H 0.05 0.40 7.44 -51.93 -0.39 0.01 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.51 6.85 -51.93 -0.36 1.15 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -27.79 403.55 -9.19 -36.98 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.13 Total: 9.28 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.85 Total: 5.15 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.44 Total: -46.65 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -27.79 -9.19 -36.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282058402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.298 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds