Wall clock time and date at job start Wed Apr 1 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47398 * 5.41044 * 3 2 1 5 5 C 1.37095 * 120.00409 * 89.99985 * 4 3 2 6 6 H 1.07991 * 120.00109 * 157.33963 * 5 4 3 7 7 C 1.38948 * 119.99563 * 337.33652 * 5 4 3 8 8 N 1.31409 * 120.00390 * 4.68469 * 7 5 4 9 9 Si 1.86799 * 119.99810 * 184.67998 * 7 5 4 10 10 H 1.48503 * 109.47365 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47321 * 300.00049 * 9 7 5 12 12 H 1.48499 * 109.47238 * 60.00177 * 9 7 5 13 13 C 1.34775 * 119.99595 * 269.99756 * 4 3 2 14 14 O 1.21299 * 120.00351 * 354.36113 * 13 4 3 15 15 C 1.50705 * 120.00115 * 174.35934 * 13 4 3 16 16 H 1.09002 * 110.85345 * 320.75150 * 15 13 4 17 17 C 1.54623 * 110.96792 * 84.53807 * 15 13 4 18 18 C 1.51283 * 104.19439 * 142.92023 * 17 15 13 19 19 O 1.21280 * 124.93860 * 163.78152 * 18 17 15 20 20 N 1.34417 * 110.11667 * 343.74307 * 18 17 15 21 21 C 1.46496 * 124.35075 * 179.57105 * 20 18 17 22 22 C 1.53002 * 109.47108 * 93.34263 * 21 20 18 23 23 H 1.09003 * 110.36305 * 57.63844 * 22 21 20 24 24 C 1.54377 * 110.41096 * 295.28569 * 22 21 20 25 25 C 1.54262 * 105.06027 * 217.36833 * 24 22 21 26 26 C 1.54384 * 105.05917 * 359.97438 * 25 24 22 27 27 N 1.48554 * 110.41053 * 179.97438 * 22 21 20 28 28 C 1.46896 * 111.00328 * 277.81991 * 27 22 21 29 29 C 1.53006 * 109.47471 * 170.83242 * 28 27 22 30 30 C 1.46761 * 111.29806 * 359.59701 * 20 18 17 31 31 H 4.40638 * 5.51295 * 180.02562 * 4 1 2 32 32 H 1.09003 * 109.47388 * 245.40641 * 3 2 1 33 33 H 1.09005 * 109.47259 * 125.40725 * 3 2 1 34 34 H 0.97003 * 120.00464 * 174.97639 * 8 7 5 35 35 H 1.09006 * 110.48576 * 261.59429 * 17 15 13 36 36 H 1.08997 * 110.48656 * 24.24093 * 17 15 13 37 37 H 1.08997 * 109.47254 * 213.34493 * 21 20 18 38 38 H 1.09003 * 109.47114 * 333.34522 * 21 20 18 39 39 H 1.09000 * 110.32581 * 336.26304 * 24 22 21 40 40 H 1.09000 * 110.31959 * 98.47353 * 24 22 21 41 41 H 1.08999 * 110.32550 * 118.89431 * 25 24 22 42 42 H 1.08999 * 110.32245 * 241.00146 * 25 24 22 43 43 H 1.08999 * 110.41060 * 142.63176 * 26 25 24 44 44 H 1.08996 * 110.41454 * 265.07469 * 26 25 24 45 45 H 1.08997 * 109.47118 * 290.83486 * 28 27 22 46 46 H 1.09004 * 109.47098 * 50.83493 * 28 27 22 47 47 H 1.09001 * 109.47007 * 59.99577 * 29 28 27 48 48 H 1.09000 * 109.47274 * 179.97438 * 29 28 27 49 49 H 1.09007 * 109.46653 * 300.00383 * 29 28 27 50 50 H 1.09003 * 110.24781 * 258.00945 * 30 20 18 51 51 H 1.09004 * 110.24474 * 136.01215 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3742 -0.1302 5 6 3.3637 -1.9056 -1.3731 6 1 4.0430 -2.7372 -1.4881 7 6 2.7216 -1.3741 -2.4848 8 7 1.9672 -0.3055 -2.3595 9 14 2.9306 -2.1788 -4.1576 10 1 2.1489 -1.4251 -5.1706 11 1 4.3669 -2.1704 -4.5349 12 1 2.4428 -3.5800 -4.0973 13 6 3.3600 -2.1165 0.9719 14 8 3.2564 -1.6160 2.0719 15 6 3.7403 -3.5686 0.8377 16 1 3.1782 -4.0442 0.0339 17 6 5.2625 -3.7236 0.6153 18 6 5.6253 -4.9719 1.3891 19 8 6.6547 -5.5986 1.2535 20 7 4.6411 -5.2848 2.2495 21 6 4.6651 -6.4420 3.1476 22 6 5.2309 -6.0219 4.5057 23 1 4.6371 -5.2121 4.9299 24 6 6.7064 -5.5907 4.3641 25 6 7.3990 -6.1061 5.6425 26 6 6.2835 -6.8048 6.4492 27 7 5.2641 -7.1811 5.4341 28 6 3.9510 -7.3945 6.0570 29 6 3.9587 -8.7194 6.8223 30 6 3.5391 -4.3185 2.1731 31 1 -1.0498 -0.0003 -0.0002 32 1 3.0091 0.4285 0.9344 33 1 3.0090 0.5963 -0.8376 34 1 1.5779 0.1084 -3.1456 35 1 5.4819 -3.8546 -0.4444 36 1 5.7960 -2.8600 1.0124 37 1 3.6518 -6.8219 3.2779 38 1 5.2933 -7.2223 2.7180 39 1 7.1518 -6.0491 3.4812 40 1 6.7795 -4.5047 4.3055 41 1 8.1844 -6.8175 5.3871 42 1 7.8137 -5.2732 6.2105 43 1 6.6729 -7.6940 6.9450 44 1 5.8553 -6.1181 7.1794 45 1 3.7390 -6.5777 6.7468 46 1 3.1830 -7.4259 5.2841 47 1 4.7267 -8.6881 7.5951 48 1 2.9845 -8.8775 7.2848 49 1 4.1707 -9.5363 6.1323 50 1 3.5905 -3.6208 3.0090 51 1 2.5810 -4.8384 2.1732 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282058402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:04 Heat of formation + Delta-G solvation = -6.404285 kcal Electronic energy + Delta-G solvation = -31557.429200 eV Core-core repulsion = 27458.304709 eV Total energy + Delta-G solvation = -4099.124491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.88414 -40.44756 -39.79229 -37.51198 -36.82605 -34.69945 -34.03858 -33.60968 -33.11469 -30.69856 -29.61346 -28.79779 -28.27657 -26.77779 -26.13581 -23.78954 -23.62332 -21.58625 -21.43361 -20.97291 -20.35338 -19.45549 -18.70215 -18.13159 -17.75045 -17.12899 -16.94141 -16.48665 -16.21681 -16.10949 -15.84125 -15.69261 -15.49322 -14.97580 -14.83385 -14.64158 -14.45802 -14.21559 -13.98741 -13.86166 -13.76611 -13.65384 -13.29087 -13.11355 -13.04069 -12.84639 -12.53870 -12.48311 -12.35372 -12.33105 -12.28743 -12.14824 -12.07474 -11.78561 -11.66316 -11.49597 -11.33008 -11.10676 -10.94121 -10.49426 -10.29047 -9.81848 -9.78212 -9.47632 -8.18138 -5.95108 1.44337 1.50565 1.51654 1.58704 1.77467 1.97968 2.10901 2.35822 2.49133 3.01156 3.05428 3.14975 3.40512 3.54046 3.65686 3.70518 3.94572 3.97930 4.02838 4.07708 4.12314 4.16616 4.32126 4.37217 4.41756 4.49995 4.56234 4.58331 4.63859 4.67113 4.68682 4.84230 4.86525 4.87587 4.89870 4.98229 5.00879 5.05979 5.07752 5.16626 5.16882 5.24640 5.38230 5.46929 5.47541 5.51543 5.81321 5.85133 6.00535 6.10070 6.41578 7.11107 7.12129 7.19798 7.53367 7.92272 8.74356 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002713 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.983968 B =10318.246738 C =11025.599792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.129 4.129 3 C 0.240 3.760 4 N -0.444 5.444 5 C -0.352 4.352 6 H 0.116 0.884 7 C 0.002 3.998 8 N -0.882 5.882 9 Si 0.984 3.016 10 H -0.290 1.290 11 H -0.265 1.265 12 H -0.268 1.268 13 C 0.466 3.534 14 O -0.626 6.626 15 C -0.094 4.094 16 H 0.116 0.884 17 C -0.131 4.131 18 C 0.524 3.476 19 O -0.561 6.561 20 N -0.607 5.607 21 C 0.144 3.856 22 C 0.052 3.948 23 H 0.049 0.951 24 C -0.122 4.122 25 C -0.121 4.121 26 C 0.038 3.962 27 N -0.511 5.511 28 C 0.034 3.966 29 C -0.139 4.139 30 C 0.124 3.876 31 H 0.231 0.769 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.269 0.731 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -11.933 11.797 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.131 4.131 3 C 0.117 3.883 4 N -0.161 5.161 5 C -0.479 4.479 6 H 0.133 0.867 7 C -0.202 4.202 8 N -0.520 5.520 9 Si 0.809 3.191 10 H -0.215 1.215 11 H -0.190 1.190 12 H -0.193 1.193 13 C 0.255 3.745 14 O -0.515 6.515 15 C -0.116 4.116 16 H 0.134 0.866 17 C -0.172 4.172 18 C 0.313 3.687 19 O -0.441 6.441 20 N -0.339 5.339 21 C 0.022 3.978 22 C -0.058 4.058 23 H 0.067 0.933 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.090 4.090 27 N -0.236 5.236 28 C -0.094 4.094 29 C -0.197 4.197 30 C 0.001 3.999 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.127 -12.476 11.896 17.520 hybrid contribution -0.536 1.109 -0.730 1.432 sum 2.592 -11.367 11.166 16.143 Atomic orbital electron populations 1.25030 0.96296 1.00851 1.06932 1.23437 0.95004 0.99514 0.95134 1.18115 0.84540 0.85445 1.00186 1.43806 1.55803 1.10508 1.05968 1.20003 1.26326 1.18662 0.82911 0.86654 1.26122 0.94135 0.96673 1.03223 1.70076 1.31262 1.19914 1.30724 0.85104 0.78555 0.78353 0.77124 1.21537 1.19017 1.19252 1.20227 0.82185 0.88526 0.83530 1.90524 1.59936 1.74026 1.26976 1.21848 0.96907 0.93309 0.99502 0.86624 1.22201 0.95153 0.96799 1.03051 1.20901 0.82430 0.85481 0.79895 1.90657 1.26865 1.57284 1.69299 1.48238 1.19766 1.27422 1.38521 1.21275 1.02722 0.86091 0.87705 1.22922 0.96630 0.92347 0.93886 0.93295 1.22317 0.94689 0.99678 0.99324 1.22292 0.98036 1.00275 0.95308 1.23157 0.92488 0.99702 0.93607 1.65298 1.07219 1.36365 1.14730 1.22369 0.90610 0.98336 0.98056 1.21681 1.02166 0.96071 0.99734 1.21984 0.90272 0.90603 0.97058 0.75241 0.92261 0.87653 0.92069 0.86687 0.88505 0.88537 0.90064 0.91655 0.93245 0.90780 0.90624 0.88765 0.93467 0.94590 0.90450 0.92644 0.91141 0.92248 0.90564 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.59 19.25 74.32 1.43 -10.16 16 2 C -0.13 -6.12 11.26 31.12 0.35 -5.77 16 3 C 0.24 11.35 5.22 84.57 0.44 11.79 16 4 N -0.44 -20.61 2.58 -645.41 -1.67 -22.28 16 5 C -0.35 -15.95 8.77 84.04 0.74 -15.22 16 6 H 0.12 4.75 5.68 -2.92 -0.02 4.74 16 7 C 0.00 0.07 5.38 84.93 0.46 0.53 16 8 N -0.88 -42.95 8.36 21.66 0.18 -42.77 16 9 Si 0.98 37.06 29.56 68.60 2.03 39.08 16 10 H -0.29 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 12 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 13 C 0.47 20.15 6.78 87.66 0.59 20.74 16 14 O -0.63 -29.98 15.11 -3.09 -0.05 -30.03 16 15 C -0.09 -3.21 2.51 -10.48 -0.03 -3.24 16 16 H 0.12 3.85 7.42 -2.39 -0.02 3.84 16 17 C -0.13 -4.27 5.96 30.59 0.18 -4.09 16 18 C 0.52 17.15 7.44 87.90 0.65 17.81 16 19 O -0.56 -21.14 15.96 -3.03 -0.05 -21.19 16 20 N -0.61 -17.06 2.80 -817.99 -2.29 -19.35 16 21 C 0.14 3.45 5.54 86.38 0.48 3.92 16 22 C 0.05 1.20 2.54 45.06 0.11 1.31 16 23 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 24 C -0.12 -3.10 5.81 31.49 0.18 -2.92 16 25 C -0.12 -2.39 7.00 31.49 0.22 -2.17 16 26 C 0.04 0.67 5.90 86.42 0.51 1.18 16 27 N -0.51 -10.09 5.03 -856.32 -4.31 -14.40 16 28 C 0.03 0.56 5.49 86.31 0.47 1.03 16 29 C -0.14 -1.82 10.02 71.98 0.72 -1.10 16 30 C 0.12 3.62 6.82 86.83 0.59 4.21 16 31 H 0.23 7.63 7.80 -4.43 -0.03 7.60 16 32 H 0.06 2.77 7.35 -2.39 -0.02 2.76 16 33 H 0.11 5.17 6.39 -2.38 -0.02 5.15 16 34 H 0.27 12.73 8.32 -92.71 -0.77 11.96 16 35 H 0.11 3.54 7.33 -2.38 -0.02 3.53 16 36 H 0.10 3.30 7.89 -2.39 -0.02 3.28 16 37 H 0.10 1.89 7.28 -2.39 -0.02 1.87 16 38 H 0.08 2.15 7.81 -2.39 -0.02 2.14 16 39 H 0.06 1.97 6.17 -2.39 -0.01 1.96 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.41 7.84 -2.39 -0.02 1.39 16 44 H 0.05 0.79 7.76 -2.39 -0.02 0.78 16 45 H 0.04 0.59 7.79 -2.39 -0.02 0.57 16 46 H 0.08 1.22 7.17 -2.38 -0.02 1.20 16 47 H 0.05 0.70 7.44 -2.39 -0.02 0.68 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.08 2.51 6.85 -2.39 -0.02 2.49 16 51 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -59.30 403.55 2.88 -56.42 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.92 Total: 36.65 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 8.11 Total: 17.87 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -8.08 Total: -98.80 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.10 Total: -51.22 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.08 kcal Total: -59.30 2.88 -56.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282058402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.011 kcal (2) G-P(sol) polarization free energy of solvation -59.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds