Wall clock time and date at job start Wed Apr 1 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47164 * 2 1 4 4 C 1.39835 * 120.00086 * 269.99997 * 3 2 1 5 5 C 1.38911 * 120.00010 * 5.61646 * 4 3 2 6 6 C 1.38027 * 120.00355 * 179.72417 * 5 4 3 7 7 C 1.38932 * 119.99584 * 0.56853 * 6 5 4 8 8 N 1.39894 * 120.00292 * 179.68194 * 7 6 5 9 9 C 1.34777 * 119.99689 * 330.87344 * 8 7 6 10 10 O 1.21391 * 120.00325 * 353.25516 * 9 8 7 11 11 C 1.49324 * 119.99851 * 173.25879 * 9 8 7 12 12 O 1.21364 * 120.00048 * 4.05368 * 11 9 8 13 13 N 1.34778 * 120.00104 * 184.05034 * 11 9 8 14 14 C 1.46503 * 119.99876 * 1.01199 * 13 11 9 15 15 C 1.46497 * 119.99876 * 181.00896 * 13 11 9 16 16 C 1.50700 * 109.46839 * 90.00573 * 15 13 11 17 17 H 1.08001 * 120.00317 * 359.97438 * 16 15 13 18 18 C 1.37883 * 119.99777 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99873 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46975 * 119.99998 * 20 18 16 23 23 H 1.48493 * 109.46948 * 239.99691 * 20 18 16 24 24 C 1.38936 * 119.99659 * 359.70219 * 7 6 5 25 25 C 1.38022 * 120.00016 * 0.02562 * 24 7 6 26 26 C 1.46507 * 119.99831 * 90.00283 * 3 2 1 27 27 C 1.52998 * 109.46698 * 295.57767 * 26 3 2 28 28 C 1.53000 * 109.47084 * 55.57817 * 26 3 2 29 29 H 1.09001 * 109.47633 * 59.99648 * 1 2 3 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47212 * 299.99813 * 1 2 3 32 32 H 1.08997 * 109.47145 * 120.00366 * 2 1 3 33 33 H 1.09003 * 109.47079 * 239.99868 * 2 1 3 34 34 H 1.08003 * 119.99996 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.00373 * 180.27279 * 6 5 4 36 36 H 0.96993 * 119.99943 * 150.86729 * 8 7 6 37 37 H 1.09003 * 109.47205 * 83.25082 * 14 13 11 38 38 H 1.08994 * 109.47078 * 203.25338 * 14 13 11 39 39 H 1.08998 * 109.46811 * 323.25348 * 14 13 11 40 40 H 1.09003 * 109.46798 * 209.99933 * 15 13 11 41 41 H 1.08997 * 109.47197 * 330.00086 * 15 13 11 42 42 H 0.97002 * 119.99672 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99756 * 179.97438 * 24 7 6 44 44 H 1.08000 * 120.00127 * 179.97438 * 25 24 7 45 45 H 1.08995 * 109.47184 * 175.58228 * 26 3 2 46 46 H 1.08999 * 109.47322 * 60.00007 * 27 26 3 47 47 H 1.09005 * 109.46961 * 179.97438 * 27 26 3 48 48 H 1.09005 * 109.47375 * 299.99694 * 27 26 3 49 49 H 1.08997 * 109.47073 * 60.00019 * 28 26 3 50 50 H 1.09000 * 109.46742 * 179.97438 * 28 26 3 51 51 H 1.08999 * 109.47005 * 300.00036 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2513 2.0404 -1.2110 5 6 1.9105 1.4295 -2.4111 6 6 2.1353 2.0825 -3.6062 7 6 2.7133 3.3459 -3.6094 8 7 2.9473 4.0050 -4.8210 9 6 3.1846 3.2931 -5.9405 10 8 3.3169 2.0881 -5.8770 11 6 3.2847 3.9867 -7.2591 12 8 3.2261 5.1977 -7.3138 13 7 3.4404 3.2679 -8.3885 14 6 3.4890 1.8050 -8.3249 15 6 3.5608 3.9494 -9.6797 16 6 5.0129 4.2369 -9.9624 17 1 5.7702 3.9418 -9.2512 18 6 5.3745 4.8775 -11.1286 19 7 4.4522 5.2372 -11.9944 20 14 7.1743 5.2345 -11.4786 21 1 8.0060 4.7329 -10.3553 22 1 7.5782 4.5553 -12.7360 23 1 7.3694 6.6995 -11.6228 24 6 3.0594 3.9544 -2.4093 25 6 2.8294 3.3037 -1.2141 26 6 2.2625 2.0718 1.2688 27 6 0.9410 2.2373 2.0218 28 6 3.2340 1.2497 2.1181 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.4658 0.4453 -2.4089 35 1 1.8662 1.6094 -4.5390 36 1 2.9387 4.9743 -4.8552 37 1 2.4740 1.4083 -8.3043 38 1 4.0117 1.4205 -9.2007 39 1 4.0175 1.4980 -7.4225 40 1 3.1569 3.3118 -10.4661 41 1 3.0041 4.8860 -9.6495 42 1 4.7066 5.6876 -12.8150 43 1 3.5091 4.9363 -2.4118 44 1 3.0988 3.7766 -0.2812 45 1 2.6935 3.0532 1.0712 46 1 0.5100 1.2559 2.2194 47 1 1.1227 2.7507 2.9661 48 1 0.2489 2.8230 1.4168 49 1 4.1754 1.1317 1.5816 50 1 3.4160 1.7638 3.0619 51 1 2.8030 0.2683 2.3157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283335699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:56 Heat of formation + Delta-G solvation = -14.360164 kcal Electronic energy + Delta-G solvation = -30301.776374 eV Core-core repulsion = 26202.306891 eV Total energy + Delta-G solvation = -4099.469483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78607 -39.79087 -38.29391 -37.19160 -35.41512 -34.23792 -33.20789 -32.55680 -31.14576 -30.64211 -28.21111 -27.82415 -27.47566 -26.07008 -24.47978 -24.01460 -23.03751 -21.92406 -21.49853 -19.91432 -19.36632 -18.22765 -17.33070 -16.97068 -16.59169 -16.07247 -15.68326 -15.52001 -14.99407 -14.85070 -14.67661 -14.39128 -14.31061 -14.17413 -13.84087 -13.63459 -13.41589 -13.19995 -13.07012 -12.99325 -12.74342 -12.54041 -12.38633 -12.24813 -12.11271 -12.07975 -11.87811 -11.66077 -11.42617 -11.28489 -11.14615 -10.96864 -10.83843 -10.72014 -10.54082 -10.42919 -10.20184 -9.64188 -9.16776 -9.00634 -8.66553 -8.47749 -7.76527 -7.11943 -6.08873 -4.14015 1.30123 1.39990 2.08379 2.78154 2.88510 3.28885 3.36220 3.41328 3.68474 3.93676 4.11725 4.32998 4.42375 4.55389 4.65851 4.73565 4.81555 4.89433 4.99273 5.02331 5.04981 5.13920 5.17562 5.25918 5.30532 5.34506 5.37168 5.44871 5.52309 5.52885 5.57729 5.69398 5.84058 5.93232 5.96231 6.02826 6.03502 6.14320 6.17527 6.36264 6.41649 6.63080 6.82597 6.91404 7.13259 7.30890 7.31042 7.39235 7.42310 7.85593 8.01555 8.14908 8.25335 8.66675 8.91661 9.50955 10.99335 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.001916 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.157249 B =14610.855482 C =14962.780704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 N -0.624 5.624 4 C 0.201 3.799 5 C -0.175 4.175 6 C -0.075 4.075 7 C 0.093 3.907 8 N -0.647 5.647 9 C 0.508 3.492 10 O -0.506 6.506 11 C 0.494 3.506 12 O -0.526 6.526 13 N -0.562 5.562 14 C 0.065 3.935 15 C 0.241 3.759 16 C -0.529 4.529 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.096 4.096 25 C -0.180 4.180 26 C 0.141 3.859 27 C -0.166 4.166 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.420 0.580 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.264 0.736 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -9.500 28.733 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.004 4.004 3 N -0.337 5.337 4 C 0.100 3.900 5 C -0.198 4.198 6 C -0.095 4.095 7 C -0.002 4.002 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.381 6.381 11 C 0.274 3.726 12 O -0.404 6.404 13 N -0.293 5.293 14 C -0.078 4.078 15 C 0.122 3.878 16 C -0.567 4.567 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.117 4.117 25 C -0.202 4.202 26 C 0.037 3.963 27 C -0.225 4.225 28 C -0.223 4.223 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.559 -9.724 28.600 31.139 hybrid contribution 0.964 0.644 -0.356 1.212 sum -6.595 -9.080 28.244 30.392 Atomic orbital electron populations 1.22425 0.96635 1.01837 1.02902 1.21317 0.93873 0.82762 1.02492 1.46601 1.71990 1.12818 1.02251 1.17808 0.94692 0.91756 0.85694 1.20546 1.07535 1.01203 0.90475 1.21019 0.96097 0.93766 0.98655 1.17587 1.02938 0.94906 0.84756 1.43212 1.68616 1.11325 1.06128 1.20897 0.76463 0.87409 0.86030 1.90602 1.46949 1.14244 1.86299 1.19563 0.80924 0.87437 0.84632 1.90733 1.50343 1.13131 1.86196 1.48113 1.65837 1.07447 1.07894 1.22277 1.01454 0.79570 1.04494 1.19524 0.97880 0.93613 0.76779 1.21433 0.92129 1.38617 1.04566 0.92184 1.24943 0.98021 0.95245 0.95875 1.69943 1.32775 1.40243 1.10226 0.86394 0.84543 0.78109 0.78116 1.19727 1.20881 1.20810 1.20638 1.00048 1.00399 0.90643 1.20426 1.06822 0.95259 0.97742 1.20994 0.95152 0.96635 0.83470 1.22339 0.97745 1.02235 1.00137 1.22195 0.99636 1.00607 0.99842 0.92167 0.92156 0.91980 0.90956 0.90776 0.85832 0.84401 0.74282 0.93545 0.91164 0.88481 0.94200 0.93387 0.92654 0.85655 0.85758 0.89150 0.92052 0.91964 0.92218 0.92117 0.91678 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.94 37.15 0.37 -0.74 16 2 C 0.12 0.79 5.29 -4.05 -0.02 0.77 16 3 N -0.62 -4.97 2.54 -164.13 -0.42 -5.38 16 4 C 0.20 2.07 6.54 -83.70 -0.55 1.53 16 5 C -0.17 -1.98 9.09 -39.41 -0.36 -2.34 16 6 C -0.07 -1.01 8.67 -39.40 -0.34 -1.35 16 7 C 0.09 1.26 6.35 -83.66 -0.53 0.73 16 8 N -0.65 -9.64 5.34 -10.26 -0.05 -9.69 16 9 C 0.51 9.06 7.54 -11.64 -0.09 8.97 16 10 O -0.51 -9.12 10.57 5.46 0.06 -9.06 16 11 C 0.49 10.61 7.73 -11.64 -0.09 10.52 16 12 O -0.53 -12.60 16.06 5.48 0.09 -12.52 16 13 N -0.56 -12.53 2.86 -183.52 -0.52 -13.06 16 14 C 0.07 1.20 9.58 59.85 0.57 1.77 16 15 C 0.24 6.32 5.14 -5.19 -0.03 6.29 16 16 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 17 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.10 -1.09 9.94 -39.40 -0.39 -1.48 16 25 C -0.18 -1.83 9.31 -39.41 -0.37 -2.20 16 26 C 0.14 0.89 3.20 -67.93 -0.22 0.68 16 27 C -0.17 -0.90 8.41 37.16 0.31 -0.59 16 28 C -0.16 -0.88 9.08 37.16 0.34 -0.54 16 29 H 0.06 0.46 8.00 -51.93 -0.42 0.04 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 5.42 -51.93 -0.28 0.09 16 32 H 0.07 0.40 6.20 -51.93 -0.32 0.07 16 33 H 0.07 0.52 6.45 -51.93 -0.33 0.19 16 34 H 0.12 1.21 6.18 -52.48 -0.32 0.89 16 35 H 0.14 2.01 6.14 -52.49 -0.32 1.69 16 36 H 0.42 5.73 8.28 -40.82 -0.34 5.39 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.27 8.02 -51.93 -0.42 0.86 16 39 H 0.10 1.76 5.30 -51.99 -0.28 1.48 16 40 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.05 1.38 7.41 -51.93 -0.38 1.00 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.01 5.74 -52.49 -0.30 0.71 16 45 H 0.09 0.58 5.31 -51.93 -0.28 0.30 16 46 H 0.06 0.32 6.02 -51.93 -0.31 0.01 16 47 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.06 0.29 6.53 -51.93 -0.34 -0.05 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -32.28 404.26 -8.42 -40.69 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.57 Total: 3.36 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -1.81 Total: 8.32 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.26 Total: -53.71 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.15 Total: -21.57 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.28 -8.42 -40.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283335699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds