Wall clock time and date at job start Wed Apr 1 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47164 * 2 1 4 4 C 1.39835 * 120.00086 * 269.99997 * 3 2 1 5 5 C 1.38911 * 120.00010 * 5.61646 * 4 3 2 6 6 C 1.38027 * 120.00355 * 179.72417 * 5 4 3 7 7 C 1.38932 * 119.99584 * 0.56853 * 6 5 4 8 8 N 1.39894 * 120.00292 * 179.68194 * 7 6 5 9 9 C 1.34777 * 119.99689 * 330.87344 * 8 7 6 10 10 O 1.21391 * 120.00325 * 353.25516 * 9 8 7 11 11 C 1.49324 * 119.99851 * 173.25879 * 9 8 7 12 12 O 1.21364 * 120.00048 * 4.05368 * 11 9 8 13 13 N 1.34778 * 120.00104 * 184.05034 * 11 9 8 14 14 C 1.46503 * 119.99876 * 1.01199 * 13 11 9 15 15 C 1.46497 * 119.99876 * 181.00896 * 13 11 9 16 16 C 1.50700 * 109.46839 * 90.00573 * 15 13 11 17 17 H 1.08001 * 120.00317 * 359.97438 * 16 15 13 18 18 C 1.37883 * 119.99777 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99784 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99873 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46975 * 119.99998 * 20 18 16 23 23 H 1.48493 * 109.46948 * 239.99691 * 20 18 16 24 24 C 1.38936 * 119.99659 * 359.70219 * 7 6 5 25 25 C 1.38022 * 120.00016 * 0.02562 * 24 7 6 26 26 C 1.46507 * 119.99831 * 90.00283 * 3 2 1 27 27 C 1.52998 * 109.46698 * 295.57767 * 26 3 2 28 28 C 1.53000 * 109.47084 * 55.57817 * 26 3 2 29 29 H 1.09001 * 109.47633 * 59.99648 * 1 2 3 30 30 H 1.09003 * 109.47151 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47212 * 299.99813 * 1 2 3 32 32 H 1.08997 * 109.47145 * 120.00366 * 2 1 3 33 33 H 1.09003 * 109.47079 * 239.99868 * 2 1 3 34 34 H 1.08003 * 119.99996 * 359.97438 * 5 4 3 35 35 H 1.07994 * 120.00373 * 180.27279 * 6 5 4 36 36 H 0.96993 * 119.99943 * 150.86729 * 8 7 6 37 37 H 1.09003 * 109.47205 * 83.25082 * 14 13 11 38 38 H 1.08994 * 109.47078 * 203.25338 * 14 13 11 39 39 H 1.08998 * 109.46811 * 323.25348 * 14 13 11 40 40 H 1.09003 * 109.46798 * 209.99933 * 15 13 11 41 41 H 1.08997 * 109.47197 * 330.00086 * 15 13 11 42 42 H 0.97002 * 119.99672 * 180.02562 * 19 18 16 43 43 H 1.08002 * 119.99756 * 179.97438 * 24 7 6 44 44 H 1.08000 * 120.00127 * 179.97438 * 25 24 7 45 45 H 1.08995 * 109.47184 * 175.58228 * 26 3 2 46 46 H 1.08999 * 109.47322 * 60.00007 * 27 26 3 47 47 H 1.09005 * 109.46961 * 179.97438 * 27 26 3 48 48 H 1.09005 * 109.47375 * 299.99694 * 27 26 3 49 49 H 1.08997 * 109.47073 * 60.00019 * 28 26 3 50 50 H 1.09000 * 109.46742 * 179.97438 * 28 26 3 51 51 H 1.08999 * 109.47005 * 300.00036 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2513 2.0404 -1.2110 5 6 1.9105 1.4295 -2.4111 6 6 2.1353 2.0825 -3.6062 7 6 2.7133 3.3459 -3.6094 8 7 2.9473 4.0050 -4.8210 9 6 3.1846 3.2931 -5.9405 10 8 3.3169 2.0881 -5.8770 11 6 3.2847 3.9867 -7.2591 12 8 3.2261 5.1977 -7.3138 13 7 3.4404 3.2679 -8.3885 14 6 3.4890 1.8050 -8.3249 15 6 3.5608 3.9494 -9.6797 16 6 5.0129 4.2369 -9.9624 17 1 5.7702 3.9418 -9.2512 18 6 5.3745 4.8775 -11.1286 19 7 4.4522 5.2372 -11.9944 20 14 7.1743 5.2345 -11.4786 21 1 8.0060 4.7329 -10.3553 22 1 7.5782 4.5553 -12.7360 23 1 7.3694 6.6995 -11.6228 24 6 3.0594 3.9544 -2.4093 25 6 2.8294 3.3037 -1.2141 26 6 2.2625 2.0718 1.2688 27 6 0.9410 2.2373 2.0218 28 6 3.2340 1.2497 2.1181 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.4658 0.4453 -2.4089 35 1 1.8662 1.6094 -4.5390 36 1 2.9387 4.9743 -4.8552 37 1 2.4740 1.4083 -8.3043 38 1 4.0117 1.4205 -9.2007 39 1 4.0175 1.4980 -7.4225 40 1 3.1569 3.3118 -10.4661 41 1 3.0041 4.8860 -9.6495 42 1 4.7066 5.6876 -12.8150 43 1 3.5091 4.9363 -2.4118 44 1 3.0988 3.7766 -0.2812 45 1 2.6935 3.0532 1.0712 46 1 0.5100 1.2559 2.2194 47 1 1.1227 2.7507 2.9661 48 1 0.2489 2.8230 1.4168 49 1 4.1754 1.1317 1.5816 50 1 3.4160 1.7638 3.0619 51 1 2.8030 0.2683 2.3157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283335699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:55 Heat of formation + Delta-G solvation = -33.223489 kcal Electronic energy + Delta-G solvation = -30302.594349 eV Core-core repulsion = 26202.306891 eV Total energy + Delta-G solvation = -4100.287459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10424 -40.78177 -39.65955 -38.23908 -37.01817 -35.53904 -34.64966 -33.79507 -31.97416 -31.44744 -30.09896 -28.74414 -28.06361 -27.58627 -26.18156 -24.72991 -24.37731 -22.96635 -22.51017 -20.98987 -20.45704 -19.15871 -18.76177 -18.61320 -18.17522 -17.29972 -17.09050 -16.80223 -16.60953 -16.06759 -15.74128 -15.40526 -15.26252 -14.98981 -14.88228 -14.75795 -14.45408 -14.24934 -14.13198 -13.84720 -13.82233 -13.72564 -13.58470 -13.43792 -13.27033 -13.06853 -12.95816 -12.80308 -12.64954 -12.62006 -12.25887 -12.24374 -12.14507 -12.06686 -11.72188 -11.66017 -11.62282 -11.24602 -10.66854 -10.32833 -10.06364 -9.85344 -9.58918 -8.25999 -7.94340 -6.40637 0.09963 0.50521 0.82348 1.36673 1.38347 1.40542 1.52674 2.16474 2.20384 2.37035 2.65198 2.95603 3.04521 3.32585 3.78686 3.91166 4.07915 4.19549 4.20957 4.35342 4.43682 4.44973 4.47248 4.51177 4.53305 4.61213 4.68424 4.78061 4.78606 4.81768 4.86343 4.91643 5.00194 5.02011 5.08072 5.13397 5.17178 5.18117 5.26647 5.31701 5.41186 5.41296 5.45208 5.49561 5.55898 5.69460 5.89758 5.98082 6.09394 6.42260 6.48000 6.61524 6.65283 6.79244 7.00299 7.29921 8.81989 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.001916 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.157249 B =14610.855482 C =14962.780704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 N -0.621 5.621 4 C 0.208 3.792 5 C -0.183 4.183 6 C -0.086 4.086 7 C 0.060 3.940 8 N -0.630 5.630 9 C 0.516 3.484 10 O -0.510 6.510 11 C 0.488 3.512 12 O -0.559 6.559 13 N -0.572 5.572 14 C 0.069 3.931 15 C 0.254 3.746 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.278 1.278 24 C -0.089 4.089 25 C -0.182 4.182 26 C 0.135 3.865 27 C -0.161 4.161 28 C -0.160 4.160 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.424 0.576 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.034 0.966 41 H 0.013 0.987 42 H 0.269 0.731 43 H 0.144 0.856 44 H 0.149 0.851 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.047 0.953 49 H 0.049 0.951 50 H 0.079 0.921 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -10.283 31.639 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.331 5.331 4 C 0.105 3.895 5 C -0.205 4.205 6 C -0.107 4.107 7 C -0.034 4.034 8 N -0.276 5.276 9 C 0.299 3.701 10 O -0.387 6.387 11 C 0.270 3.730 12 O -0.439 6.439 13 N -0.302 5.302 14 C -0.073 4.073 15 C 0.134 3.866 16 C -0.586 4.586 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.194 1.194 23 H -0.203 1.203 24 C -0.109 4.109 25 C -0.204 4.204 26 C 0.032 3.968 27 C -0.219 4.219 28 C -0.218 4.218 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.263 0.737 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.052 0.948 41 H 0.031 0.969 42 H 0.078 0.922 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.098 0.902 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.791 -10.544 31.579 33.978 hybrid contribution 0.623 0.839 -1.064 1.491 sum -6.168 -9.704 30.515 32.609 Atomic orbital electron populations 1.22365 0.96154 1.02495 1.02216 1.21457 0.94209 0.82112 1.03108 1.46840 1.70935 1.13257 1.02095 1.17961 0.93428 0.91830 0.86288 1.20623 1.07937 1.01711 0.90277 1.20969 0.96887 0.94047 0.98805 1.17759 1.05547 0.95587 0.84549 1.43038 1.67244 1.11442 1.05861 1.20021 0.77634 0.87168 0.85319 1.90593 1.47902 1.14038 1.86130 1.20225 0.79705 0.87218 0.85857 1.90697 1.51558 1.14656 1.86996 1.48110 1.66127 1.08959 1.07034 1.22405 1.02889 0.77214 1.04783 1.19060 0.96547 0.92327 0.78669 1.21651 0.92845 1.39232 1.04834 0.92898 1.25842 1.02734 0.94756 0.95542 1.70046 1.34970 1.40600 1.10703 0.85325 0.78836 0.78042 0.78353 1.19360 1.19411 1.20336 1.20856 0.99075 1.00983 0.90033 1.20712 1.06249 0.95168 0.98285 1.21190 0.96011 0.96753 0.82851 1.22282 0.96800 1.02427 1.00399 1.22150 0.98681 1.00862 1.00072 0.93823 0.90900 0.91614 0.89261 0.91268 0.84806 0.86123 0.73741 0.91504 0.91130 0.87806 0.94842 0.96879 0.92177 0.83840 0.83349 0.89034 0.91699 0.90499 0.93415 0.93196 0.90218 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.94 71.98 0.72 -1.11 16 2 C 0.11 1.27 5.29 86.38 0.46 1.73 16 3 N -0.62 -8.49 2.54 -673.20 -1.71 -10.20 16 4 C 0.21 3.93 6.54 38.19 0.25 4.18 16 5 C -0.18 -4.00 9.09 22.38 0.20 -3.80 16 6 C -0.09 -2.33 8.67 22.39 0.19 -2.13 16 7 C 0.06 1.60 6.35 38.19 0.24 1.84 16 8 N -0.63 -18.91 5.34 -304.71 -1.63 -20.54 16 9 C 0.52 18.70 7.54 87.23 0.66 19.36 16 10 O -0.51 -18.52 10.57 -3.38 -0.04 -18.56 16 11 C 0.49 21.63 7.73 87.23 0.67 22.31 16 12 O -0.56 -27.89 16.06 -3.29 -0.05 -27.94 16 13 N -0.57 -26.29 2.86 -852.88 -2.44 -28.72 16 14 C 0.07 2.55 9.58 127.77 1.22 3.77 16 15 C 0.25 13.91 5.14 85.63 0.44 14.35 16 16 C -0.55 -31.83 9.39 25.60 0.24 -31.59 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C 0.01 0.62 5.46 84.66 0.46 1.09 16 19 N -0.92 -55.33 13.29 21.45 0.28 -55.04 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 C -0.09 -1.87 9.94 22.39 0.22 -1.65 16 25 C -0.18 -3.30 9.31 22.38 0.21 -3.09 16 26 C 0.13 1.33 3.20 44.99 0.14 1.47 16 27 C -0.16 -1.30 8.41 71.98 0.61 -0.70 16 28 C -0.16 -1.23 9.08 71.98 0.65 -0.58 16 29 H 0.04 0.61 8.00 -2.39 -0.02 0.59 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.64 5.42 -2.39 -0.01 0.63 16 32 H 0.09 0.72 6.20 -2.39 -0.01 0.71 16 33 H 0.07 0.86 6.45 -2.39 -0.02 0.85 16 34 H 0.13 2.55 6.18 -2.91 -0.02 2.53 16 35 H 0.12 3.62 6.14 -2.91 -0.02 3.60 16 36 H 0.42 11.70 8.28 -92.71 -0.77 10.94 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.58 8.02 -2.39 -0.02 2.56 16 39 H 0.10 3.75 5.30 -3.28 -0.02 3.73 16 40 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 41 H 0.01 0.80 7.41 -2.39 -0.02 0.78 16 42 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 44 H 0.15 1.95 5.74 -2.91 -0.02 1.93 16 45 H 0.09 0.89 5.31 -2.39 -0.01 0.87 16 46 H 0.06 0.49 6.02 -2.39 -0.01 0.47 16 47 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 48 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 49 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.06 0.44 6.53 -2.39 -0.02 0.42 16 Total: -1.00 -70.67 404.26 4.23 -66.44 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.19 Total: 22.15 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 7.60 Total: 25.45 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -5.49 Total: -114.51 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -0.09 Total: -46.50 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.67 4.23 -66.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283335699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.216 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds