Wall clock time and date at job start Wed Apr 1 2020 04:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47489 * 2 1 4 4 C 1.52998 * 109.47043 * 239.99830 * 2 1 3 5 5 N 1.46504 * 109.47182 * 185.00334 * 4 2 1 6 6 C 1.34784 * 119.99685 * 180.02562 * 5 4 2 7 7 O 1.21346 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.49449 * 119.99567 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99941 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99933 * 180.02562 * 8 6 5 11 11 C 1.46496 * 119.99849 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46980 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47338 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46976 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00415 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99830 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00131 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47292 * 119.99494 * 18 16 14 21 21 H 1.48503 * 109.47122 * 239.99919 * 18 16 14 22 22 N 1.46507 * 109.47246 * 119.99910 * 2 1 3 23 23 C 1.46498 * 119.99962 * 64.78282 * 22 2 1 24 24 C 1.39673 * 119.99968 * 244.78395 * 22 2 1 25 25 C 1.38914 * 120.07308 * 354.25165 * 24 22 2 26 26 C 1.38108 * 119.92379 * 180.02562 * 25 24 22 27 27 C 1.38285 * 120.07521 * 359.97438 * 26 25 24 28 28 C 1.38289 * 120.14936 * 0.27756 * 27 26 25 29 29 C 1.38108 * 120.07388 * 359.44716 * 28 27 26 30 30 H 1.09002 * 109.46878 * 300.00011 * 1 2 3 31 31 H 1.08994 * 109.47294 * 59.99918 * 1 2 3 32 32 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47055 * 304.99748 * 4 2 1 34 34 H 1.08998 * 109.47200 * 64.99711 * 4 2 1 35 35 H 0.96999 * 119.99958 * 359.97438 * 5 4 2 36 36 H 0.96999 * 119.99991 * 359.97438 * 10 8 6 37 37 H 1.09006 * 109.47204 * 299.99238 * 11 10 8 38 38 H 1.08998 * 109.47672 * 59.99554 * 11 10 8 39 39 H 1.08998 * 109.47234 * 299.99749 * 12 11 10 40 40 H 1.09007 * 109.47514 * 59.99883 * 12 11 10 41 41 H 1.08991 * 109.47083 * 299.99976 * 13 12 11 42 42 H 1.09003 * 109.46232 * 60.00264 * 13 12 11 43 43 H 0.96995 * 119.99690 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.47153 * 270.00149 * 23 22 2 45 45 H 1.09002 * 109.47095 * 30.00438 * 23 22 2 46 46 H 1.08998 * 109.47312 * 149.99955 * 23 22 2 47 47 H 1.08001 * 120.04009 * 0.04011 * 25 24 22 48 48 H 1.07999 * 119.95935 * 180.02562 * 26 25 24 49 49 H 1.08000 * 119.92649 * 180.02562 * 27 26 25 50 50 H 1.07999 * 119.96367 * 179.70471 * 28 27 26 51 51 H 1.07996 * 120.03817 * 180.27599 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1912 7 8 3.5695 -1.8837 -3.1405 8 6 5.6625 -1.5353 -2.1316 9 8 6.2659 -1.0804 -1.1820 10 7 6.3356 -2.1368 -3.1324 11 6 7.7955 -2.2420 -3.0737 12 6 8.3056 -2.9627 -4.3232 13 6 9.8305 -3.0720 -4.2623 14 6 10.3327 -3.7825 -5.4928 15 1 9.6342 -4.1224 -6.2430 16 6 11.6840 -3.9994 -5.6602 17 7 12.5346 -3.5859 -4.7464 18 14 12.3067 -4.8794 -7.1857 19 1 11.1567 -5.2396 -8.0535 20 1 13.2289 -3.9855 -7.9311 21 1 13.0295 -6.1133 -6.7851 22 7 2.0183 -0.6906 1.1962 23 6 1.7529 -2.1200 1.3765 24 6 2.7370 0.0138 2.1648 25 6 3.0928 1.3379 1.9416 26 6 3.8038 2.0314 2.9013 27 6 4.1612 1.4092 4.0834 28 6 3.8131 0.0896 4.3066 29 6 3.0972 -0.6080 3.3536 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7515 -0.1584 -2.1369 35 1 3.9824 -0.4623 -0.4319 36 1 5.8532 -2.5007 -3.8913 37 1 8.2302 -1.2434 -3.0270 38 1 8.0839 -2.8056 -2.1865 39 1 7.8710 -3.9612 -4.3696 40 1 8.0173 -2.3994 -5.2108 41 1 10.2648 -2.0734 -4.2162 42 1 10.1191 -3.6352 -3.3747 43 1 13.4852 -3.7382 -4.8644 44 1 0.8106 -2.2503 1.9084 45 1 1.6897 -2.6036 0.4016 46 1 2.5610 -2.5698 1.9533 47 1 2.8135 1.8247 1.0189 48 1 4.0804 3.0610 2.7285 49 1 4.7169 1.9539 4.8324 50 1 4.0979 -0.3948 5.2289 51 1 2.8218 -1.6372 3.5304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283916854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:37 Heat of formation + Delta-G solvation = -45.299570 kcal Electronic energy + Delta-G solvation = -29679.299930 eV Core-core repulsion = 25578.488813 eV Total energy + Delta-G solvation = -4100.811117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77421 -40.01193 -38.59149 -37.51247 -35.73083 -34.63134 -33.32694 -32.44086 -31.24694 -31.21014 -29.70285 -27.78192 -26.79007 -26.56309 -24.24960 -23.13104 -22.40997 -21.99175 -20.77647 -20.51734 -19.93249 -18.35441 -18.34347 -16.97653 -16.40341 -16.35522 -16.03500 -15.84283 -15.59951 -15.30321 -14.93638 -14.84677 -14.54252 -14.43162 -14.14726 -13.92969 -13.75037 -13.64064 -13.38298 -13.02325 -12.94981 -12.68085 -12.41872 -12.32095 -12.31033 -11.88863 -11.79660 -11.68695 -11.63191 -11.49864 -10.96677 -10.93472 -10.76593 -10.58507 -10.21285 -9.90993 -9.79400 -9.51696 -9.38079 -9.15156 -9.12309 -8.97670 -8.38737 -7.63226 -6.03229 -4.06142 1.21037 1.36588 1.41436 2.30002 2.64593 3.22467 3.29756 3.37323 3.41189 3.64154 3.67333 4.07910 4.34148 4.43312 4.50650 4.54510 4.63592 4.77327 4.82466 4.97246 5.01151 5.07868 5.14861 5.17729 5.24072 5.31378 5.32795 5.35329 5.42567 5.52450 5.59352 5.61378 5.69015 5.78700 5.93063 6.00181 6.07924 6.27002 6.27367 6.42649 6.53757 6.59422 6.68838 6.87159 6.90318 6.94806 7.16294 7.39714 7.61592 7.70976 7.73022 7.95319 8.05566 8.36515 9.00626 9.58230 11.08099 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.001797 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.276355 B =15582.074198 C =16819.466919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 H 0.101 0.899 4 C 0.104 3.896 5 N -0.698 5.698 6 C 0.508 3.492 7 O -0.522 6.522 8 C 0.499 3.501 9 O -0.524 6.524 10 N -0.691 5.691 11 C 0.114 3.886 12 C -0.122 4.122 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.628 5.628 23 C 0.091 3.909 24 C 0.214 3.786 25 C -0.200 4.200 26 C -0.070 4.070 27 C -0.178 4.178 28 C -0.072 4.072 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.415 0.585 36 H 0.411 0.589 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.385 9.514 16.339 33.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.118 0.882 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.289 3.711 7 O -0.398 6.398 8 C 0.278 3.722 9 O -0.400 6.400 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.160 4.160 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.340 5.340 23 C -0.051 4.051 24 C 0.114 3.886 25 C -0.222 4.222 26 C -0.089 4.089 27 C -0.198 4.198 28 C -0.091 4.091 29 C -0.216 4.216 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.252 0.748 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.137 0.863 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -27.283 9.399 16.240 33.113 hybrid contribution 0.469 -0.554 -0.816 1.093 sum -26.814 8.845 15.424 32.173 Atomic orbital electron populations 1.22101 0.93806 1.03004 1.02935 1.21339 0.94930 0.97417 0.83439 0.88152 1.21901 0.79735 1.02084 0.98313 1.45653 1.07521 1.58411 1.23681 1.20363 0.88833 0.78975 0.82946 1.90758 1.69947 1.46409 1.32660 1.20005 0.87792 0.80420 0.83968 1.90779 1.69587 1.46927 1.32730 1.46062 1.09353 1.56406 1.22510 1.21841 0.76178 1.01814 1.00982 1.21928 1.00922 0.98886 0.94310 1.19039 0.87191 0.97567 0.97568 1.21238 0.92042 1.37235 1.05488 0.92515 1.25037 0.97078 0.95854 0.96560 1.69974 1.02408 1.46738 1.34164 0.86515 0.78857 0.79399 0.83101 1.19729 1.20994 1.21002 1.46466 1.59081 1.08361 1.20091 1.21615 1.00855 0.80577 1.02099 1.17820 0.91009 0.91263 0.88545 1.20707 1.06369 0.93861 1.01279 1.20902 0.95633 0.99306 0.93075 1.20936 1.04689 0.95606 0.98519 1.20916 0.95748 0.94250 0.98173 1.20682 1.06155 1.00655 0.94069 0.91510 0.91071 0.91891 0.90546 0.89786 0.74826 0.75358 0.91097 0.91128 0.92446 0.92433 0.96181 0.96200 0.92969 0.93342 0.91398 0.91210 0.86138 0.86210 0.86515 0.86275 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 9.26 37.16 0.34 -0.34 16 2 C 0.13 0.77 2.75 -67.93 -0.19 0.58 16 3 H 0.10 0.56 5.31 -51.93 -0.28 0.28 16 4 C 0.10 0.76 4.80 -4.04 -0.02 0.75 16 5 N -0.70 -7.11 5.38 -60.73 -0.33 -7.43 16 6 C 0.51 6.67 7.89 -11.58 -0.09 6.58 16 7 O -0.52 -7.67 16.48 5.50 0.09 -7.58 16 8 C 0.50 7.60 7.89 -11.58 -0.09 7.51 16 9 O -0.52 -9.18 16.48 5.49 0.09 -9.09 16 10 N -0.69 -10.51 5.55 -60.73 -0.34 -10.85 16 11 C 0.11 1.98 5.67 -4.05 -0.02 1.96 16 12 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 N -0.63 -4.35 2.34 -172.00 -0.40 -4.75 16 23 C 0.09 0.56 9.30 59.85 0.56 1.11 16 24 C 0.21 1.83 6.54 -83.79 -0.55 1.28 16 25 C -0.20 -1.68 9.31 -39.38 -0.37 -2.05 16 26 C -0.07 -0.59 10.04 -39.61 -0.40 -0.99 16 27 C -0.18 -1.51 10.04 -39.55 -0.40 -1.90 16 28 C -0.07 -0.61 10.04 -39.61 -0.40 -1.01 16 29 C -0.19 -1.67 9.16 -39.38 -0.36 -2.03 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.27 7.79 -51.93 -0.40 -0.14 16 33 H 0.08 0.57 6.77 -51.93 -0.35 0.22 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 4.40 7.61 -40.82 -0.31 4.09 16 36 H 0.41 5.69 7.94 -40.82 -0.32 5.36 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.41 6.30 -51.93 -0.33 0.08 16 46 H 0.07 0.45 6.46 -51.93 -0.34 0.11 16 47 H 0.12 0.84 5.74 -52.49 -0.30 0.54 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 50 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.89 6.31 -52.49 -0.33 0.56 16 LS Contribution 419.75 15.07 6.33 6.33 Total: -1.00 -32.82 419.75 -9.51 -42.33 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.00 Total: 4.52 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.67 Total: -3.98 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.33 Total: -49.04 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.18 Total: -16.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.82 -9.51 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283916854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.970 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds