Wall clock time and date at job start Wed Apr 1 2020 04:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47489 * 2 1 4 4 C 1.52998 * 109.47043 * 239.99830 * 2 1 3 5 5 N 1.46504 * 109.47182 * 185.00334 * 4 2 1 6 6 C 1.34784 * 119.99685 * 180.02562 * 5 4 2 7 7 O 1.21346 * 120.00026 * 359.97438 * 6 5 4 8 8 C 1.49449 * 119.99567 * 179.97438 * 6 5 4 9 9 O 1.21356 * 119.99941 * 0.02562 * 8 6 5 10 10 N 1.34779 * 119.99933 * 180.02562 * 8 6 5 11 11 C 1.46496 * 119.99849 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46980 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47338 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46976 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00415 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99739 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99830 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00131 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47292 * 119.99494 * 18 16 14 21 21 H 1.48503 * 109.47122 * 239.99919 * 18 16 14 22 22 N 1.46507 * 109.47246 * 119.99910 * 2 1 3 23 23 C 1.46498 * 119.99962 * 64.78282 * 22 2 1 24 24 C 1.39673 * 119.99968 * 244.78395 * 22 2 1 25 25 C 1.38914 * 120.07308 * 354.25165 * 24 22 2 26 26 C 1.38108 * 119.92379 * 180.02562 * 25 24 22 27 27 C 1.38285 * 120.07521 * 359.97438 * 26 25 24 28 28 C 1.38289 * 120.14936 * 0.27756 * 27 26 25 29 29 C 1.38108 * 120.07388 * 359.44716 * 28 27 26 30 30 H 1.09002 * 109.46878 * 300.00011 * 1 2 3 31 31 H 1.08994 * 109.47294 * 59.99918 * 1 2 3 32 32 H 1.09000 * 109.47167 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47055 * 304.99748 * 4 2 1 34 34 H 1.08998 * 109.47200 * 64.99711 * 4 2 1 35 35 H 0.96999 * 119.99958 * 359.97438 * 5 4 2 36 36 H 0.96999 * 119.99991 * 359.97438 * 10 8 6 37 37 H 1.09006 * 109.47204 * 299.99238 * 11 10 8 38 38 H 1.08998 * 109.47672 * 59.99554 * 11 10 8 39 39 H 1.08998 * 109.47234 * 299.99749 * 12 11 10 40 40 H 1.09007 * 109.47514 * 59.99883 * 12 11 10 41 41 H 1.08991 * 109.47083 * 299.99976 * 13 12 11 42 42 H 1.09003 * 109.46232 * 60.00264 * 13 12 11 43 43 H 0.96995 * 119.99690 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.47153 * 270.00149 * 23 22 2 45 45 H 1.09002 * 109.47095 * 30.00438 * 23 22 2 46 46 H 1.08998 * 109.47312 * 149.99955 * 23 22 2 47 47 H 1.08001 * 120.04009 * 0.04011 * 25 24 22 48 48 H 1.07999 * 119.95935 * 180.02562 * 26 25 24 49 49 H 1.08000 * 119.92649 * 180.02562 * 27 26 25 50 50 H 1.07999 * 119.96367 * 179.70471 * 28 27 26 51 51 H 1.07996 * 120.03817 * 180.27599 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1912 7 8 3.5695 -1.8837 -3.1405 8 6 5.6625 -1.5353 -2.1316 9 8 6.2659 -1.0804 -1.1820 10 7 6.3356 -2.1368 -3.1324 11 6 7.7955 -2.2420 -3.0737 12 6 8.3056 -2.9627 -4.3232 13 6 9.8305 -3.0720 -4.2623 14 6 10.3327 -3.7825 -5.4928 15 1 9.6342 -4.1224 -6.2430 16 6 11.6840 -3.9994 -5.6602 17 7 12.5346 -3.5859 -4.7464 18 14 12.3067 -4.8794 -7.1857 19 1 11.1567 -5.2396 -8.0535 20 1 13.2289 -3.9855 -7.9311 21 1 13.0295 -6.1133 -6.7851 22 7 2.0183 -0.6906 1.1962 23 6 1.7529 -2.1200 1.3765 24 6 2.7370 0.0138 2.1648 25 6 3.0928 1.3379 1.9416 26 6 3.8038 2.0314 2.9013 27 6 4.1612 1.4092 4.0834 28 6 3.8131 0.0896 4.3066 29 6 3.0972 -0.6080 3.3536 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6053 -1.7199 -1.2950 34 1 1.7515 -0.1584 -2.1369 35 1 3.9824 -0.4623 -0.4319 36 1 5.8532 -2.5007 -3.8913 37 1 8.2302 -1.2434 -3.0270 38 1 8.0839 -2.8056 -2.1865 39 1 7.8710 -3.9612 -4.3696 40 1 8.0173 -2.3994 -5.2108 41 1 10.2648 -2.0734 -4.2162 42 1 10.1191 -3.6352 -3.3747 43 1 13.4852 -3.7382 -4.8644 44 1 0.8106 -2.2503 1.9084 45 1 1.6897 -2.6036 0.4016 46 1 2.5610 -2.5698 1.9533 47 1 2.8135 1.8247 1.0189 48 1 4.0804 3.0610 2.7285 49 1 4.7169 1.9539 4.8324 50 1 4.0979 -0.3948 5.2289 51 1 2.8218 -1.6372 3.5304 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283916854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:36 Heat of formation + Delta-G solvation = -65.864050 kcal Electronic energy + Delta-G solvation = -29680.191673 eV Core-core repulsion = 25578.488813 eV Total energy + Delta-G solvation = -4101.702860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81174 -40.70850 -39.68420 -38.18484 -37.18420 -35.63268 -35.08496 -33.09699 -32.99882 -31.80463 -30.25532 -29.15470 -27.91984 -27.12530 -25.70301 -24.00989 -23.57169 -22.61214 -22.38515 -21.41221 -20.84812 -19.46301 -18.90113 -18.52843 -17.97700 -17.30842 -16.94438 -16.68842 -16.55833 -16.36219 -16.28853 -16.03944 -15.51615 -15.39723 -15.05999 -14.87938 -14.62838 -14.40885 -14.28783 -13.87727 -13.79284 -13.77350 -13.52003 -13.47113 -13.16525 -12.99633 -12.82822 -12.79134 -12.77615 -12.55987 -12.38011 -12.19623 -12.00163 -11.71755 -11.57405 -11.51586 -11.22911 -10.82521 -10.69713 -10.56234 -10.39711 -10.29562 -9.77656 -8.20271 -8.20038 -6.31092 0.27567 0.58644 0.74361 1.25256 1.41382 1.41855 1.54940 2.06333 2.11100 2.41071 2.60540 3.03732 3.13728 3.38182 3.54675 3.82675 4.00465 4.06730 4.14506 4.16264 4.24560 4.28872 4.40663 4.50773 4.51305 4.59469 4.66253 4.67700 4.70488 4.83185 4.84817 4.86558 4.89928 4.92617 5.01465 5.07155 5.13696 5.21082 5.21307 5.30920 5.40342 5.50949 5.66608 5.69563 5.80744 5.83721 5.84285 6.00943 6.21592 6.27329 6.33824 6.58133 6.65376 6.86063 6.87824 7.38302 8.91961 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.001797 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.276355 B =15582.074198 C =16819.466919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.105 0.895 4 C 0.103 3.897 5 N -0.684 5.684 6 C 0.515 3.485 7 O -0.538 6.538 8 C 0.498 3.502 9 O -0.549 6.549 10 N -0.685 5.685 11 C 0.127 3.873 12 C -0.105 4.105 13 C 0.024 3.976 14 C -0.540 4.540 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.260 1.260 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.628 5.628 23 C 0.090 3.910 24 C 0.206 3.794 25 C -0.212 4.212 26 C -0.082 4.082 27 C -0.193 4.193 28 C -0.083 4.083 29 C -0.209 4.209 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.419 0.581 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.067 0.933 41 H -0.004 1.004 42 H -0.004 1.004 43 H 0.263 0.737 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.128 0.872 50 H 0.132 0.868 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.224 9.361 15.410 34.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.122 0.878 4 C -0.021 4.021 5 N -0.336 5.336 6 C 0.295 3.705 7 O -0.415 6.415 8 C 0.279 3.721 9 O -0.427 6.427 10 N -0.338 5.338 11 C 0.004 3.996 12 C -0.143 4.143 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.340 5.340 23 C -0.053 4.053 24 C 0.105 3.895 25 C -0.234 4.234 26 C -0.100 4.100 27 C -0.213 4.213 28 C -0.102 4.102 29 C -0.231 4.231 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.251 0.749 36 H 0.257 0.743 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.150 0.850 48 H 0.151 0.849 49 H 0.146 0.854 50 H 0.150 0.850 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -29.176 9.249 15.311 34.223 hybrid contribution 1.015 -0.476 -0.459 1.211 sum -28.161 8.773 14.852 33.024 Atomic orbital electron populations 1.22047 0.92256 1.03357 1.03480 1.21397 0.95933 0.97174 0.82209 0.87768 1.22140 0.77624 1.02734 0.99581 1.45688 1.08748 1.56720 1.22482 1.19871 0.87567 0.79578 0.83503 1.90759 1.69728 1.47617 1.33398 1.20423 0.88943 0.79526 0.83240 1.90770 1.70413 1.47914 1.33637 1.45869 1.08330 1.56517 1.23056 1.21469 0.77629 1.00943 0.99535 1.21639 0.96940 1.00001 0.95732 1.18939 0.91048 0.95476 0.95864 1.21702 0.92594 1.37202 1.06354 0.91719 1.26004 0.97476 0.96699 0.99911 1.70107 1.02814 1.48114 1.36342 0.85378 0.78454 0.78041 0.79037 1.18395 1.20532 1.20547 1.46566 1.58759 1.08626 1.20039 1.21660 1.01211 0.80130 1.02251 1.17967 0.91115 0.91537 0.88887 1.20916 1.06551 0.94041 1.01845 1.21177 0.95582 1.00131 0.93129 1.21185 1.05115 0.95923 0.99065 1.21176 0.95715 0.94494 0.98801 1.20888 1.06585 1.01209 0.94423 0.91778 0.89684 0.91642 0.90201 0.88784 0.74909 0.74312 0.91815 0.91902 0.91420 0.91383 0.98553 0.98598 0.92787 0.92203 0.91223 0.91797 0.84993 0.84853 0.85416 0.84988 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.26 71.98 0.67 -0.29 16 2 C 0.14 1.31 2.75 44.99 0.12 1.44 16 3 H 0.10 0.95 5.31 -2.39 -0.01 0.93 16 4 C 0.10 1.29 4.80 86.38 0.41 1.71 16 5 N -0.68 -12.92 5.38 -464.40 -2.50 -15.42 16 6 C 0.51 12.84 7.89 87.27 0.69 13.53 16 7 O -0.54 -14.89 16.48 -3.23 -0.05 -14.94 16 8 C 0.50 14.82 7.89 87.27 0.69 15.51 16 9 O -0.55 -19.12 16.48 -3.27 -0.05 -19.18 16 10 N -0.69 -20.23 5.55 -464.41 -2.58 -22.80 16 11 C 0.13 4.41 5.67 86.38 0.49 4.90 16 12 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 13 C 0.02 1.26 4.97 29.85 0.15 1.41 16 14 C -0.54 -30.18 9.11 25.60 0.23 -29.94 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 18 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 N -0.63 -7.87 2.34 -698.08 -1.63 -9.50 16 23 C 0.09 0.98 9.30 127.77 1.19 2.17 16 24 C 0.21 3.36 6.54 38.21 0.25 3.61 16 25 C -0.21 -3.38 9.31 22.40 0.21 -3.18 16 26 C -0.08 -1.33 10.04 22.25 0.22 -1.10 16 27 C -0.19 -3.21 10.04 22.29 0.22 -2.99 16 28 C -0.08 -1.38 10.04 22.25 0.22 -1.16 16 29 C -0.21 -3.52 9.16 22.40 0.21 -3.32 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.40 7.79 -2.39 -0.02 0.38 16 33 H 0.08 1.02 6.77 -2.38 -0.02 1.00 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.41 8.31 7.61 -92.71 -0.71 7.60 16 36 H 0.42 11.00 7.94 -92.71 -0.74 10.26 16 37 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.74 6.30 -2.39 -0.02 0.72 16 46 H 0.06 0.78 6.46 -2.39 -0.02 0.76 16 47 H 0.13 1.68 5.74 -2.91 -0.02 1.66 16 48 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 49 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 50 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 51 H 0.13 1.84 6.31 -2.91 -0.02 1.82 16 Total: -1.00 -70.10 419.75 1.60 -68.49 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.49 Total: 25.12 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.60 Total: -1.33 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -6.42 Total: -104.15 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.11 Total: -34.12 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.10 1.60 -68.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283916854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.629 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds