Wall clock time and date at job start Wed Apr 1 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47462 * 2 1 4 4 N 1.46502 * 109.47391 * 120.00586 * 2 1 3 5 5 C 1.34770 * 119.99774 * 274.99973 * 4 2 1 6 6 O 1.21282 * 120.00424 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47000 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46865 * 300.00037 * 7 5 4 10 10 C 1.52993 * 109.46962 * 59.99755 * 7 5 4 11 11 C 1.50710 * 109.47163 * 240.00638 * 2 1 3 12 12 O 1.21280 * 119.99353 * 259.46828 * 11 2 1 13 13 N 1.34769 * 120.00088 * 79.46100 * 11 2 1 14 14 C 1.46500 * 120.00031 * 354.95313 * 13 11 2 15 15 C 1.50700 * 109.47398 * 86.38717 * 14 13 11 16 16 H 1.07998 * 120.00125 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99741 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00434 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99871 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46976 * 60.00155 * 19 17 15 21 21 H 1.48499 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46902 * 300.00290 * 19 17 15 23 23 C 1.46497 * 120.00103 * 174.66770 * 13 11 2 24 24 C 1.50707 * 109.46947 * 90.00433 * 23 13 11 25 25 C 1.38675 * 120.41533 * 269.72288 * 24 23 13 26 26 C 1.38629 * 118.41826 * 179.78099 * 25 24 23 27 27 C 1.38235 * 119.15736 * 0.51599 * 26 25 24 28 28 N 1.31846 * 120.76409 * 359.72472 * 27 26 25 29 29 C 1.31888 * 121.72869 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.46854 * 307.79712 * 1 2 3 31 31 H 1.09001 * 109.47236 * 67.79605 * 1 2 3 32 32 H 1.09001 * 109.47285 * 187.79486 * 1 2 3 33 33 H 0.96998 * 119.99742 * 94.99344 * 4 2 1 34 34 H 1.09003 * 109.46952 * 60.00485 * 8 7 5 35 35 H 1.08997 * 109.46664 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47230 * 299.99739 * 8 7 5 37 37 H 1.09007 * 109.47293 * 60.00116 * 9 7 5 38 38 H 1.09006 * 109.47236 * 179.97438 * 9 7 5 39 39 H 1.08998 * 109.47287 * 299.99723 * 9 7 5 40 40 H 1.09008 * 109.47186 * 60.00532 * 10 7 5 41 41 H 1.08997 * 109.47176 * 179.97438 * 10 7 5 42 42 H 1.09001 * 109.47771 * 300.00350 * 10 7 5 43 43 H 1.09006 * 109.46774 * 206.39073 * 14 13 11 44 44 H 1.09003 * 109.47141 * 326.38231 * 14 13 11 45 45 H 0.96990 * 120.00211 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.47808 * 210.00635 * 23 13 11 47 47 H 1.08998 * 109.47254 * 330.00795 * 23 13 11 48 48 H 1.07994 * 120.79198 * 0.02562 * 25 24 23 49 49 H 1.07998 * 120.42480 * 180.22185 * 26 25 24 50 50 H 1.08000 * 119.61496 * 179.74724 * 27 26 25 51 51 H 1.07998 * 119.61875 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3570 6 8 1.8591 1.1584 2.4116 7 6 2.6490 -0.7291 3.5876 8 6 2.7000 0.2538 4.7590 9 6 1.7044 -1.8827 3.9312 10 6 4.0513 -1.2801 3.3220 11 6 2.0323 -0.7103 -1.2306 12 8 2.4154 -1.8585 -1.1540 13 7 2.0557 -0.0697 -2.4161 14 6 1.4911 1.2771 -2.5322 15 6 2.5383 2.2947 -2.1591 16 1 3.5257 1.9706 -1.8654 17 6 2.2360 3.6395 -2.1938 18 7 1.0339 4.0343 -2.5530 19 14 3.5337 4.9008 -1.7307 20 1 4.6979 4.7711 -2.6434 21 1 2.9614 6.2659 -1.8485 22 1 3.9733 4.6678 -0.3315 23 6 2.6513 -0.7177 -3.5872 24 6 1.5936 -1.5038 -4.3185 25 6 1.3615 -2.8334 -4.0004 26 6 0.3756 -3.5158 -4.6961 27 6 -0.3310 -2.8559 -5.6841 28 7 -0.0797 -1.5921 -5.9632 29 6 0.8473 -0.9105 -5.3186 30 1 -0.3633 0.6298 0.8120 31 1 -0.3634 0.3884 -0.9515 32 1 -0.3634 -1.0182 0.1394 33 1 2.2490 -1.6319 1.1524 34 1 1.7006 0.6459 4.9481 35 1 3.0625 -0.2603 5.6491 36 1 3.3726 1.0759 4.5145 37 1 1.6677 -2.5831 3.0967 38 1 2.0676 -2.3970 4.8210 39 1 0.7053 -1.4902 4.1204 40 1 4.7243 -0.4583 3.0773 41 1 4.4145 -1.7937 4.2122 42 1 4.0146 -1.9805 2.4876 43 1 1.1677 1.4482 -3.5590 44 1 0.6370 1.3721 -1.8616 45 1 0.8212 4.9802 -2.5771 46 1 3.0643 0.0412 -4.2517 47 1 3.4463 -1.3903 -3.2653 48 1 1.9325 -3.3245 -3.2264 49 1 0.1653 -4.5512 -4.4723 50 1 -1.0979 -3.3816 -6.2335 51 1 1.0245 0.1236 -5.5748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299558013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:19 Heat of formation + Delta-G solvation = -51.619566 kcal Electronic energy + Delta-G solvation = -31961.465102 eV Core-core repulsion = 27860.379930 eV Total energy + Delta-G solvation = -4101.085172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38212 -39.93009 -38.95121 -35.65544 -35.43858 -34.63467 -33.05761 -32.18681 -31.46990 -30.10792 -27.59454 -27.43251 -27.12605 -26.19242 -24.37141 -23.46128 -22.93762 -22.41572 -21.31590 -19.45331 -18.59628 -17.01752 -16.97650 -16.53555 -16.36720 -16.12846 -15.43999 -15.26197 -15.09570 -14.97988 -14.47307 -14.27433 -14.02323 -13.88744 -13.47258 -13.43771 -13.15905 -12.89437 -12.76641 -12.60155 -12.40135 -12.30472 -12.17684 -11.96833 -11.85262 -11.76636 -11.76448 -11.50905 -11.25706 -11.13688 -10.99974 -10.98060 -10.91424 -10.66969 -10.21400 -9.87523 -9.64933 -9.41768 -9.29357 -9.26824 -8.85521 -8.70657 -8.55192 -7.93757 -6.21302 -4.29592 1.25695 1.48685 2.89584 3.07198 3.26404 3.31295 3.32530 3.35479 3.81145 4.16281 4.33569 4.62956 4.65686 4.73776 4.83841 4.96097 5.07177 5.09726 5.14587 5.21036 5.25065 5.29888 5.46053 5.52544 5.56901 5.60696 5.64274 5.72320 5.74595 5.81641 5.83069 5.86964 5.98302 6.00547 6.05533 6.08404 6.15511 6.28160 6.30928 6.38112 6.44175 6.53396 6.61216 6.72056 6.89446 7.13718 7.33917 7.71194 7.82907 7.97530 8.08611 8.15329 8.53617 8.65236 8.80590 9.39151 10.85429 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.004429 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.310094 B = 6320.417899 C = 9112.480882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.124 3.876 3 H 0.134 0.866 4 N -0.711 5.711 5 C 0.520 3.480 6 O -0.532 6.532 7 C -0.085 4.085 8 C -0.126 4.126 9 C -0.140 4.140 10 C -0.141 4.141 11 C 0.520 3.480 12 O -0.573 6.573 13 N -0.583 5.583 14 C 0.229 3.771 15 C -0.545 4.545 16 H 0.061 0.939 17 C 0.071 3.929 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.161 3.839 24 C -0.146 4.146 25 C -0.054 4.054 26 C -0.182 4.182 27 C 0.090 3.910 28 N -0.489 5.489 29 C 0.115 3.885 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.047 0.953 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.129 0.871 50 H 0.150 0.850 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -13.999 5.381 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.152 0.848 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.407 6.407 7 C -0.089 4.089 8 C -0.184 4.184 9 C -0.197 4.197 10 C -0.199 4.199 11 C 0.308 3.692 12 O -0.455 6.455 13 N -0.312 5.312 14 C 0.110 3.890 15 C -0.583 4.583 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.037 3.963 24 C -0.149 4.149 25 C -0.081 4.081 26 C -0.202 4.202 27 C -0.067 4.067 28 N -0.197 5.197 29 C -0.042 4.042 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.239 0.761 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.156 0.844 49 H 0.147 0.853 50 H 0.167 0.833 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.299 -13.104 4.734 13.936 hybrid contribution 1.151 -0.009 0.768 1.384 sum 1.450 -13.113 5.501 14.294 Atomic orbital electron populations 1.22102 0.93453 1.01738 1.03937 1.20882 0.95374 0.99547 0.82590 0.84823 1.45818 1.67278 1.14411 1.08915 1.20501 0.77548 0.87188 0.84250 1.90738 1.49441 1.15733 1.84828 1.20797 0.97059 0.96926 0.94086 1.21651 1.03097 0.98237 0.95423 1.21861 0.99009 0.96747 1.02090 1.21868 0.94407 1.01343 1.02240 1.20431 0.77762 0.85984 0.85055 1.90536 1.51013 1.17779 1.86174 1.48205 1.57572 1.18558 1.06885 1.19710 0.94655 0.75606 0.99079 1.21361 0.98457 0.90839 1.47692 0.92118 1.24898 0.95545 0.98415 0.94440 1.69893 1.19474 1.16567 1.46409 0.86587 0.81532 0.80235 0.79413 1.20142 1.21058 1.19860 1.20178 0.92589 0.96181 0.87315 1.21403 1.00352 0.95210 0.97958 1.21657 0.95615 0.93833 0.96961 1.22107 0.98242 1.01362 0.98486 1.22702 0.97906 0.90896 0.95201 1.67706 1.16439 1.08258 1.27328 1.22813 0.90249 0.99753 0.91416 0.91243 0.90295 0.92872 0.76061 0.91930 0.92290 0.91840 0.92060 0.91560 0.92054 0.91959 0.91581 0.91928 0.94214 0.93560 0.92309 0.88859 0.89868 0.84428 0.85293 0.83301 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.14 37.16 0.34 -2.35 16 2 C 0.12 2.33 2.17 -69.08 -0.15 2.18 16 3 H 0.13 3.02 6.06 -51.93 -0.31 2.70 16 4 N -0.71 -11.54 4.83 -54.93 -0.27 -11.80 16 5 C 0.52 8.56 6.45 -10.99 -0.07 8.49 16 6 O -0.53 -11.02 15.64 5.56 0.09 -10.93 16 7 C -0.09 -1.03 0.87 -155.66 -0.14 -1.17 16 8 C -0.13 -1.48 7.76 37.16 0.29 -1.19 16 9 C -0.14 -1.35 8.37 37.16 0.31 -1.04 16 10 C -0.14 -1.49 8.37 37.15 0.31 -1.18 16 11 C 0.52 9.95 6.89 -10.98 -0.08 9.87 16 12 O -0.57 -10.94 14.87 5.56 0.08 -10.86 16 13 N -0.58 -11.28 2.45 -176.43 -0.43 -11.71 16 14 C 0.23 5.12 4.79 -5.19 -0.02 5.10 16 15 C -0.55 -13.69 8.33 -34.44 -0.29 -13.98 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -24.10 13.29 55.43 0.74 -23.37 16 19 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 2.70 5.51 -5.19 -0.03 2.67 16 24 C -0.15 -2.30 5.48 -104.48 -0.57 -2.87 16 25 C -0.05 -0.78 9.74 -39.28 -0.38 -1.17 16 26 C -0.18 -2.30 10.11 -39.44 -0.40 -2.70 16 27 C 0.09 1.20 11.18 -17.55 -0.20 1.00 16 28 N -0.49 -7.76 10.36 -13.25 -0.14 -7.90 16 29 C 0.11 1.84 10.86 -17.55 -0.19 1.65 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.45 5.94 -51.93 -0.31 1.14 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 5.88 6.57 -40.82 -0.27 5.61 16 34 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 43 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 44 H 0.05 1.09 4.77 -51.93 -0.25 0.84 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.09 1.51 8.02 -51.93 -0.42 1.10 16 47 H 0.08 1.35 7.45 -51.93 -0.39 0.97 16 48 H 0.14 1.98 7.49 -52.49 -0.39 1.59 16 49 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 51 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 416.74 15.07 6.28 6.28 Total: -1.00 -29.96 416.74 -8.18 -38.14 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -8.15 Total: 11.29 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.36 Total: 5.09 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.10 Total: -54.78 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.96 -8.18 -38.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299558013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.477 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds