Wall clock time and date at job start Wed Apr 1 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47462 * 2 1 4 4 N 1.46502 * 109.47391 * 120.00586 * 2 1 3 5 5 C 1.34770 * 119.99774 * 274.99973 * 4 2 1 6 6 O 1.21282 * 120.00424 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99950 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47000 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46865 * 300.00037 * 7 5 4 10 10 C 1.52993 * 109.46962 * 59.99755 * 7 5 4 11 11 C 1.50710 * 109.47163 * 240.00638 * 2 1 3 12 12 O 1.21280 * 119.99353 * 259.46828 * 11 2 1 13 13 N 1.34769 * 120.00088 * 79.46100 * 11 2 1 14 14 C 1.46500 * 120.00031 * 354.95313 * 13 11 2 15 15 C 1.50700 * 109.47398 * 86.38717 * 14 13 11 16 16 H 1.07998 * 120.00125 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99741 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00434 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99871 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46976 * 60.00155 * 19 17 15 21 21 H 1.48499 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46902 * 300.00290 * 19 17 15 23 23 C 1.46497 * 120.00103 * 174.66770 * 13 11 2 24 24 C 1.50707 * 109.46947 * 90.00433 * 23 13 11 25 25 C 1.38675 * 120.41533 * 269.72288 * 24 23 13 26 26 C 1.38629 * 118.41826 * 179.78099 * 25 24 23 27 27 C 1.38235 * 119.15736 * 0.51599 * 26 25 24 28 28 N 1.31846 * 120.76409 * 359.72472 * 27 26 25 29 29 C 1.31888 * 121.72869 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.46854 * 307.79712 * 1 2 3 31 31 H 1.09001 * 109.47236 * 67.79605 * 1 2 3 32 32 H 1.09001 * 109.47285 * 187.79486 * 1 2 3 33 33 H 0.96998 * 119.99742 * 94.99344 * 4 2 1 34 34 H 1.09003 * 109.46952 * 60.00485 * 8 7 5 35 35 H 1.08997 * 109.46664 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47230 * 299.99739 * 8 7 5 37 37 H 1.09007 * 109.47293 * 60.00116 * 9 7 5 38 38 H 1.09006 * 109.47236 * 179.97438 * 9 7 5 39 39 H 1.08998 * 109.47287 * 299.99723 * 9 7 5 40 40 H 1.09008 * 109.47186 * 60.00532 * 10 7 5 41 41 H 1.08997 * 109.47176 * 179.97438 * 10 7 5 42 42 H 1.09001 * 109.47771 * 300.00350 * 10 7 5 43 43 H 1.09006 * 109.46774 * 206.39073 * 14 13 11 44 44 H 1.09003 * 109.47141 * 326.38231 * 14 13 11 45 45 H 0.96990 * 120.00211 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.47808 * 210.00635 * 23 13 11 47 47 H 1.08998 * 109.47254 * 330.00795 * 23 13 11 48 48 H 1.07994 * 120.79198 * 0.02562 * 25 24 23 49 49 H 1.07998 * 120.42480 * 180.22185 * 26 25 24 50 50 H 1.08000 * 119.61496 * 179.74724 * 27 26 25 51 51 H 1.07998 * 119.61875 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3570 6 8 1.8591 1.1584 2.4116 7 6 2.6490 -0.7291 3.5876 8 6 2.7000 0.2538 4.7590 9 6 1.7044 -1.8827 3.9312 10 6 4.0513 -1.2801 3.3220 11 6 2.0323 -0.7103 -1.2306 12 8 2.4154 -1.8585 -1.1540 13 7 2.0557 -0.0697 -2.4161 14 6 1.4911 1.2771 -2.5322 15 6 2.5383 2.2947 -2.1591 16 1 3.5257 1.9706 -1.8654 17 6 2.2360 3.6395 -2.1938 18 7 1.0339 4.0343 -2.5530 19 14 3.5337 4.9008 -1.7307 20 1 4.6979 4.7711 -2.6434 21 1 2.9614 6.2659 -1.8485 22 1 3.9733 4.6678 -0.3315 23 6 2.6513 -0.7177 -3.5872 24 6 1.5936 -1.5038 -4.3185 25 6 1.3615 -2.8334 -4.0004 26 6 0.3756 -3.5158 -4.6961 27 6 -0.3310 -2.8559 -5.6841 28 7 -0.0797 -1.5921 -5.9632 29 6 0.8473 -0.9105 -5.3186 30 1 -0.3633 0.6298 0.8120 31 1 -0.3634 0.3884 -0.9515 32 1 -0.3634 -1.0182 0.1394 33 1 2.2490 -1.6319 1.1524 34 1 1.7006 0.6459 4.9481 35 1 3.0625 -0.2603 5.6491 36 1 3.3726 1.0759 4.5145 37 1 1.6677 -2.5831 3.0967 38 1 2.0676 -2.3970 4.8210 39 1 0.7053 -1.4902 4.1204 40 1 4.7243 -0.4583 3.0773 41 1 4.4145 -1.7937 4.2122 42 1 4.0146 -1.9805 2.4876 43 1 1.1677 1.4482 -3.5590 44 1 0.6370 1.3721 -1.8616 45 1 0.8212 4.9802 -2.5771 46 1 3.0643 0.0412 -4.2517 47 1 3.4463 -1.3903 -3.2653 48 1 1.9325 -3.3245 -3.2264 49 1 0.1653 -4.5512 -4.4723 50 1 -1.0979 -3.3816 -6.2335 51 1 1.0245 0.1236 -5.5748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299558013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:18 Heat of formation + Delta-G solvation = -69.206823 kcal Electronic energy + Delta-G solvation = -31962.227743 eV Core-core repulsion = 27860.379930 eV Total energy + Delta-G solvation = -4101.847813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77434 -41.12820 -40.33948 -37.06180 -36.69542 -36.12452 -34.80344 -33.61546 -32.66825 -31.48542 -29.38732 -28.22235 -28.04018 -27.61159 -25.86009 -24.92132 -24.32531 -23.67513 -22.59835 -20.83476 -20.01882 -18.75982 -18.22262 -17.96371 -17.80442 -17.35945 -16.88408 -16.62903 -16.53324 -16.20326 -16.18815 -15.60095 -15.33365 -14.84926 -14.70244 -14.64666 -14.48331 -14.27651 -14.23332 -13.91220 -13.82627 -13.54325 -13.32083 -13.17053 -13.15425 -13.05042 -12.89652 -12.86302 -12.70438 -12.63343 -12.59534 -12.39219 -12.06543 -11.90951 -11.86280 -11.76260 -10.98439 -10.74887 -10.70018 -10.55886 -10.44353 -10.20648 -9.95005 -9.56394 -8.23736 -6.36660 0.12962 0.35692 1.36923 1.40644 1.44376 1.49269 1.66217 1.92424 2.33939 2.47804 2.95501 3.07969 3.46329 3.55223 3.60445 3.84027 3.87906 3.92802 3.93006 4.09924 4.11768 4.12166 4.22022 4.27869 4.46447 4.54717 4.66173 4.70537 4.72842 4.73798 4.79510 4.82442 4.84042 4.87213 4.94088 4.94754 4.99521 5.02069 5.18736 5.21391 5.23953 5.32945 5.34196 5.36961 5.40244 5.59294 5.73193 5.79482 6.00631 6.41204 6.52950 6.74539 7.03016 7.10940 7.25067 7.35078 8.81719 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007646 B = 0.004429 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.310094 B = 6320.417899 C = 9112.480882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.093 0.907 4 N -0.701 5.701 5 C 0.513 3.487 6 O -0.582 6.582 7 C -0.080 4.080 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.138 4.138 11 C 0.521 3.479 12 O -0.569 6.569 13 N -0.585 5.585 14 C 0.246 3.754 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.027 3.973 18 N -0.914 5.914 19 Si 0.946 3.054 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.283 1.283 23 C 0.162 3.838 24 C -0.156 4.156 25 C -0.060 4.060 26 C -0.169 4.169 27 C 0.089 3.911 28 N -0.512 5.512 29 C 0.099 3.901 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.029 0.971 44 H 0.034 0.966 45 H 0.267 0.733 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.140 0.860 49 H 0.167 0.833 50 H 0.184 0.816 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -17.040 6.220 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 H 0.111 0.889 4 N -0.355 5.355 5 C 0.301 3.699 6 O -0.461 6.461 7 C -0.083 4.083 8 C -0.183 4.183 9 C -0.193 4.193 10 C -0.196 4.196 11 C 0.309 3.691 12 O -0.450 6.450 13 N -0.314 5.314 14 C 0.125 3.875 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.209 1.209 23 C 0.039 3.961 24 C -0.159 4.159 25 C -0.087 4.087 26 C -0.189 4.189 27 C -0.068 4.068 28 N -0.221 5.221 29 C -0.057 4.057 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.158 0.842 49 H 0.184 0.816 50 H 0.201 0.799 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.653 -16.188 5.559 17.129 hybrid contribution 1.032 0.840 0.494 1.420 sum 1.686 -15.348 6.053 16.584 Atomic orbital electron populations 1.21988 0.92536 1.02801 1.02870 1.20626 0.96113 0.97723 0.83744 0.88933 1.45758 1.66908 1.14726 1.08138 1.21496 0.76315 0.86786 0.85313 1.90714 1.51638 1.18132 1.85634 1.20883 0.98467 0.97452 0.91520 1.21672 1.02011 0.97955 0.96666 1.21876 0.98018 0.95730 1.03673 1.21888 0.92840 1.00932 1.03919 1.20411 0.77712 0.86032 0.84950 1.90525 1.50918 1.17436 1.86149 1.48115 1.57673 1.17588 1.07991 1.19288 0.93647 0.76746 0.97777 1.21576 0.98545 0.91586 1.46717 0.92981 1.25538 0.97053 1.00100 0.94698 1.69975 1.20782 1.16780 1.47743 0.85786 0.79926 0.78524 0.78568 1.18974 1.20554 1.20866 1.20255 0.93128 0.96256 0.86475 1.21229 1.00451 0.95921 0.98280 1.21780 0.96305 0.93292 0.97315 1.22473 0.96546 1.02819 0.97036 1.23336 0.98213 0.90044 0.95238 1.67709 1.16649 1.09773 1.27945 1.22725 0.91075 0.99738 0.92180 0.92046 0.91571 0.90591 0.74784 0.93231 0.88777 0.93927 0.91439 0.88556 0.92740 0.93630 0.88351 0.91647 0.95307 0.94798 0.92348 0.89053 0.89219 0.84220 0.81593 0.79884 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 9.14 71.98 0.66 -4.46 16 2 C 0.13 4.88 2.17 44.25 0.10 4.98 16 3 H 0.09 4.42 6.06 -2.39 -0.01 4.40 16 4 N -0.70 -22.72 4.83 -446.09 -2.15 -24.87 16 5 C 0.51 17.07 6.45 87.66 0.56 17.63 16 6 O -0.58 -25.21 15.64 -3.04 -0.05 -25.26 16 7 C -0.08 -1.81 0.87 -52.93 -0.05 -1.86 16 8 C -0.13 -2.80 7.76 71.98 0.56 -2.25 16 9 C -0.14 -2.24 8.37 71.98 0.60 -1.64 16 10 C -0.14 -2.61 8.37 71.98 0.60 -2.00 16 11 C 0.52 20.02 6.89 87.66 0.60 20.63 16 12 O -0.57 -21.05 14.87 -3.03 -0.05 -21.10 16 13 N -0.58 -23.09 2.45 -830.49 -2.03 -25.13 16 14 C 0.25 11.48 4.79 85.63 0.41 11.89 16 15 C -0.55 -28.38 8.33 25.60 0.21 -28.16 16 16 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 17 C 0.03 1.47 5.46 84.65 0.46 1.93 16 18 N -0.91 -51.22 13.29 21.45 0.28 -50.94 16 19 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 C 0.16 5.47 5.51 85.64 0.47 5.95 16 24 C -0.16 -4.85 5.48 -19.77 -0.11 -4.96 16 25 C -0.06 -1.64 9.74 22.47 0.22 -1.42 16 26 C -0.17 -3.73 10.11 22.36 0.23 -3.50 16 27 C 0.09 2.12 11.18 84.69 0.95 3.07 16 28 N -0.51 -15.83 10.36 -195.85 -2.03 -17.86 16 29 C 0.10 3.22 10.86 84.67 0.92 4.14 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.52 5.94 -2.39 -0.01 2.51 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.41 11.55 6.57 -92.71 -0.61 10.94 16 34 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.07 1.04 7.57 -2.38 -0.02 1.02 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.19 7.56 -2.39 -0.02 1.18 16 43 H 0.03 1.41 8.05 -2.38 -0.02 1.39 16 44 H 0.03 1.69 4.77 -2.39 -0.01 1.67 16 45 H 0.27 14.37 8.31 -92.72 -0.77 13.60 16 46 H 0.09 3.06 8.02 -2.39 -0.02 3.05 16 47 H 0.09 2.89 7.45 -2.39 -0.02 2.87 16 48 H 0.14 3.72 7.49 -2.91 -0.02 3.70 16 49 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 50 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 51 H 0.15 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -67.11 416.74 3.73 -63.38 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: 0.32 Total: 36.20 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 7.40 Total: 19.96 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -5.93 Total: -118.79 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.09 Total: -46.36 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -67.11 3.73 -63.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299558013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.822 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds