Wall clock time and date at job start Wed Apr 1 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46892 * 109.47231 * 2 1 4 4 C 1.46963 * 111.00230 * 190.00179 * 3 2 1 5 5 C 1.53042 * 109.36727 * 183.18904 * 4 3 2 6 6 N 1.46962 * 109.36701 * 301.60000 * 5 4 3 7 7 C 1.46900 * 111.00105 * 183.18851 * 6 5 4 8 8 C 1.53006 * 109.46687 * 169.99959 * 7 6 5 9 9 C 1.50701 * 109.46697 * 179.97438 * 8 7 6 10 10 O 1.21289 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.39925 * 120.00418 * 185.20942 * 11 9 8 13 13 C 1.38959 * 120.03499 * 213.75550 * 12 11 9 14 14 C 1.38153 * 120.06691 * 179.97438 * 13 12 11 15 15 C 1.38165 * 120.13775 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.07446 * 0.02562 * 15 14 13 17 17 O 1.35744 * 120.03562 * 180.02562 * 16 15 14 18 18 C 1.34835 * 117.00110 * 5.87714 * 17 16 15 19 19 H 1.07995 * 119.99947 * 5.40390 * 18 17 16 20 20 C 1.38652 * 119.99983 * 185.39975 * 18 17 16 21 21 N 1.31561 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47186 * 120.00374 * 22 20 18 25 25 H 1.48501 * 109.47202 * 239.99890 * 22 20 18 26 26 C 1.38713 * 120.03219 * 33.72893 * 12 11 9 27 27 C 1.46957 * 110.87868 * 59.31985 * 6 5 4 28 28 C 1.46952 * 111.00218 * 313.79919 * 3 2 1 29 29 H 1.09006 * 109.47176 * 299.99373 * 1 2 3 30 30 H 1.08997 * 109.47404 * 59.99760 * 1 2 3 31 31 H 1.09005 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46929 * 239.99901 * 2 1 3 33 33 H 1.08997 * 109.47404 * 120.00240 * 2 1 3 34 34 H 1.09000 * 109.48616 * 63.22029 * 4 3 2 35 35 H 1.08999 * 109.48771 * 303.16023 * 4 3 2 36 36 H 1.09006 * 109.49291 * 181.63282 * 5 4 3 37 37 H 1.09004 * 109.49047 * 61.56703 * 5 4 3 38 38 H 1.08999 * 109.47180 * 49.99789 * 7 6 5 39 39 H 1.09001 * 109.47158 * 289.99756 * 7 6 5 40 40 H 1.08996 * 109.46960 * 59.99859 * 8 7 6 41 41 H 1.09001 * 109.47156 * 299.99798 * 8 7 6 42 42 H 0.97007 * 119.99426 * 5.20543 * 11 9 8 43 43 H 1.08004 * 119.96571 * 359.97208 * 13 12 11 44 44 H 1.07995 * 119.93252 * 180.02562 * 14 13 12 45 45 H 1.08003 * 119.96563 * 179.97438 * 15 14 13 46 46 H 0.97003 * 119.99848 * 180.02562 * 21 20 18 47 47 H 1.07995 * 120.07160 * 359.74558 * 26 12 11 48 48 H 1.08996 * 109.49308 * 60.64816 * 27 6 5 49 49 H 1.09001 * 109.49070 * 180.71645 * 27 6 5 50 50 H 1.08996 * 109.49235 * 296.78484 * 28 3 2 51 51 H 1.09001 * 109.48826 * 56.84760 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4691 1.4311 -0.2383 5 6 3.9517 2.8808 -0.1517 6 7 3.2319 3.6940 -1.1419 7 6 3.7217 5.0790 -1.1419 8 6 3.1350 5.8273 -2.3406 9 6 3.6369 7.2483 -2.3402 10 8 4.3893 7.6255 -1.4669 11 7 3.2489 8.1003 -3.3097 12 6 3.7983 9.3856 -3.3727 13 6 3.0240 10.4522 -3.8131 14 6 3.5657 11.7216 -3.8751 15 6 4.8783 11.9348 -3.5002 16 6 5.6578 10.8727 -3.0601 17 8 6.9472 11.0831 -2.6914 18 6 7.3738 12.3618 -2.6593 19 1 6.6770 13.1680 -2.8348 20 6 8.7070 12.6416 -2.4009 21 7 9.5559 11.6594 -2.1876 22 14 9.2981 14.4130 -2.3572 23 1 8.1560 15.3228 -2.6273 24 1 9.8634 14.7133 -1.0172 25 1 10.3449 14.6113 -3.3917 26 6 5.1163 9.5966 -2.9951 27 6 1.7825 3.6479 -0.9036 28 6 1.3000 2.1980 -0.9902 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.6874 1.0337 -1.2295 35 1 3.9807 0.8319 0.5149 36 1 5.0215 2.9209 -0.3568 37 1 3.7579 3.2696 0.8480 38 1 4.8095 5.0797 -1.2100 39 1 3.4150 5.5728 -0.2198 40 1 2.0472 5.8265 -2.2724 41 1 3.4416 5.3335 -3.2627 42 1 2.5887 7.8224 -3.9639 43 1 1.9978 10.2886 -4.1073 44 1 2.9618 12.5490 -4.2173 45 1 5.2990 12.9283 -3.5501 46 1 10.4885 11.8551 -2.0065 47 1 5.7187 8.7701 -2.6482 48 1 1.5641 4.0453 0.0875 49 1 1.2709 4.2470 -1.6568 50 1 1.4936 1.8093 -1.9899 51 1 0.2301 2.1580 -0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299635595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:06 Heat of formation + Delta-G solvation = -18.106755 kcal Electronic energy + Delta-G solvation = -29617.132829 eV Core-core repulsion = 25517.500881 eV Total energy + Delta-G solvation = -4099.631948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.28458 -39.64992 -38.59553 -36.75738 -36.23787 -34.05768 -32.54450 -32.22636 -31.18793 -30.38017 -29.35881 -28.35524 -26.36228 -25.26751 -24.30616 -23.26739 -22.06893 -21.72585 -21.18012 -20.04044 -19.95237 -18.19780 -17.53261 -17.05166 -16.33827 -16.00513 -15.60727 -15.43546 -15.15285 -15.09558 -15.01919 -14.83254 -14.69072 -14.23883 -14.11248 -13.72980 -13.54904 -13.43746 -13.12222 -12.83855 -12.60137 -12.51192 -12.44254 -12.11549 -11.85299 -11.71867 -11.65721 -11.55869 -11.52419 -11.27909 -11.16641 -11.03071 -10.95584 -10.82085 -10.71915 -10.42379 -9.79495 -9.69307 -9.20733 -8.80184 -8.75908 -8.55873 -7.66738 -7.17145 -6.40747 -3.99684 2.00716 2.35661 2.90048 3.11743 3.15763 3.17360 3.22283 3.50215 3.73307 4.00646 4.48304 4.55025 4.59303 4.64079 4.70837 4.80192 4.85941 4.96059 5.03432 5.05476 5.10838 5.14284 5.14856 5.16592 5.31643 5.36583 5.43047 5.47790 5.54421 5.60199 5.63544 5.64862 5.66810 5.75743 5.79997 5.83633 5.86635 6.12393 6.24282 6.38665 6.59435 6.62411 6.70980 6.81468 6.82829 6.89841 7.04883 7.09913 7.35956 7.48874 7.70601 7.81336 8.04252 8.37672 9.04403 9.75819 10.77311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.001752 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.256688 B =15981.312668 C =17226.600706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.057 3.943 6 N -0.541 5.541 7 C 0.070 3.930 8 C -0.134 4.134 9 C 0.506 3.494 10 O -0.511 6.511 11 N -0.671 5.671 12 C 0.177 3.823 13 C -0.237 4.237 14 C -0.058 4.058 15 C -0.245 4.245 16 C 0.167 3.833 17 O -0.174 6.174 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.188 4.188 27 C 0.051 3.949 28 C 0.053 3.947 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.405 0.595 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.269 0.731 47 H 0.128 0.872 48 H 0.044 0.956 49 H 0.081 0.919 50 H 0.041 0.959 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 -20.100 -0.012 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.070 4.070 5 C -0.071 4.071 6 N -0.266 5.266 7 C -0.058 4.058 8 C -0.174 4.174 9 C 0.293 3.707 10 O -0.385 6.385 11 N -0.316 5.316 12 C 0.084 3.916 13 C -0.258 4.258 14 C -0.077 4.077 15 C -0.265 4.265 16 C 0.113 3.887 17 O -0.077 6.077 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.209 4.209 27 C -0.077 4.077 28 C -0.075 4.075 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.240 0.760 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.146 0.854 46 H 0.079 0.921 47 H 0.146 0.854 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.060 0.940 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.333 -20.080 0.770 26.537 hybrid contribution -0.098 0.804 -0.401 0.904 sum -17.431 -19.275 0.369 25.991 Atomic orbital electron populations 1.21936 0.94984 1.01948 1.02546 1.22071 0.95792 0.89012 1.00802 1.62244 1.04213 1.10805 1.49531 1.22159 0.87874 0.96630 1.00329 1.22140 0.98419 0.92437 0.94085 1.62140 1.03936 1.11073 1.49494 1.21801 1.00973 0.86489 0.96529 1.21607 1.02136 0.91845 1.01807 1.20726 0.81390 0.87429 0.81192 1.90810 1.34418 1.77626 1.35610 1.43442 1.44072 1.12836 1.31285 1.17177 0.91442 0.83302 0.99685 1.20264 0.98993 0.92289 1.14236 1.20505 0.94522 0.95490 0.97212 1.21182 0.95314 1.00037 1.09966 1.19133 0.85937 0.92613 0.91064 1.84002 1.20516 1.29718 1.73485 1.21387 0.94163 0.80729 1.50388 0.88976 1.25308 0.94729 0.99975 0.96592 1.70065 1.03971 1.31507 1.44003 0.85637 0.79066 0.80388 0.78256 1.19082 1.20164 1.20171 1.20009 0.93823 0.96442 1.10614 1.22254 0.88613 0.96306 1.00569 1.22266 0.98570 0.92896 0.93798 0.91755 0.92297 0.92163 0.94881 0.90697 0.93894 0.90277 0.89886 0.93716 0.89495 0.93543 0.89027 0.87867 0.75965 0.87415 0.87063 0.85450 0.92088 0.85367 0.93821 0.90087 0.94041 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.83 9.17 37.15 0.34 -0.49 16 2 C 0.05 0.33 6.00 -3.83 -0.02 0.31 16 3 N -0.54 -4.38 4.86 -234.48 -1.14 -5.52 16 4 C 0.06 0.47 5.58 -3.77 -0.02 0.45 16 5 C 0.06 0.53 5.61 -3.77 -0.02 0.50 16 6 N -0.54 -5.19 4.71 -234.46 -1.10 -6.30 16 7 C 0.07 0.78 4.25 -3.82 -0.02 0.76 16 8 C -0.13 -1.33 5.64 -27.88 -0.16 -1.49 16 9 C 0.51 7.52 7.56 -10.99 -0.08 7.43 16 10 O -0.51 -10.22 13.69 5.55 0.08 -10.14 16 11 N -0.67 -9.52 5.34 -9.88 -0.05 -9.57 16 12 C 0.18 3.32 6.27 -83.72 -0.52 2.80 16 13 C -0.24 -4.08 9.96 -39.35 -0.39 -4.47 16 14 C -0.06 -1.08 10.03 -39.64 -0.40 -1.47 16 15 C -0.25 -5.47 9.13 -39.36 -0.36 -5.83 16 16 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 17 O -0.17 -5.20 9.76 0.05 0.00 -5.20 16 18 C -0.39 -11.21 9.44 30.89 0.29 -10.92 16 19 H 0.09 2.44 5.29 -52.49 -0.28 2.16 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.19 -4.35 8.60 -39.21 -0.34 -4.69 16 27 C 0.05 0.42 5.41 -3.76 -0.02 0.40 16 28 C 0.05 0.40 4.93 -3.77 -0.02 0.38 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 6.26 -51.93 -0.33 -0.02 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.03 0.21 8.08 -51.92 -0.42 -0.21 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.09 7.98 -51.93 -0.41 0.68 16 39 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.09 0.70 6.49 -51.93 -0.34 0.36 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.41 3.97 8.82 -40.82 -0.36 3.61 16 43 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.13 2.82 5.71 -52.48 -0.30 2.52 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.13 3.17 6.43 -52.49 -0.34 2.84 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 50 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.54 5.99 -51.93 -0.31 0.23 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -34.61 403.87 -10.53 -45.14 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.04 Total: 6.11 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -2.10 Total: -11.35 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -1.54 Total: -46.53 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.61 -10.53 -45.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.029 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds