Wall clock time and date at job start Wed Apr 1 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46892 * 109.47231 * 2 1 4 4 C 1.46963 * 111.00230 * 190.00179 * 3 2 1 5 5 C 1.53042 * 109.36727 * 183.18904 * 4 3 2 6 6 N 1.46962 * 109.36701 * 301.60000 * 5 4 3 7 7 C 1.46900 * 111.00105 * 183.18851 * 6 5 4 8 8 C 1.53006 * 109.46687 * 169.99959 * 7 6 5 9 9 C 1.50701 * 109.46697 * 179.97438 * 8 7 6 10 10 O 1.21289 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00146 * 180.02562 * 9 8 7 12 12 C 1.39925 * 120.00418 * 185.20942 * 11 9 8 13 13 C 1.38959 * 120.03499 * 213.75550 * 12 11 9 14 14 C 1.38153 * 120.06691 * 179.97438 * 13 12 11 15 15 C 1.38165 * 120.13775 * 0.02562 * 14 13 12 16 16 C 1.38912 * 120.07446 * 0.02562 * 15 14 13 17 17 O 1.35744 * 120.03562 * 180.02562 * 16 15 14 18 18 C 1.34835 * 117.00110 * 5.87714 * 17 16 15 19 19 H 1.07995 * 119.99947 * 5.40390 * 18 17 16 20 20 C 1.38652 * 119.99983 * 185.39975 * 18 17 16 21 21 N 1.31561 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47186 * 120.00374 * 22 20 18 25 25 H 1.48501 * 109.47202 * 239.99890 * 22 20 18 26 26 C 1.38713 * 120.03219 * 33.72893 * 12 11 9 27 27 C 1.46957 * 110.87868 * 59.31985 * 6 5 4 28 28 C 1.46952 * 111.00218 * 313.79919 * 3 2 1 29 29 H 1.09006 * 109.47176 * 299.99373 * 1 2 3 30 30 H 1.08997 * 109.47404 * 59.99760 * 1 2 3 31 31 H 1.09005 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46929 * 239.99901 * 2 1 3 33 33 H 1.08997 * 109.47404 * 120.00240 * 2 1 3 34 34 H 1.09000 * 109.48616 * 63.22029 * 4 3 2 35 35 H 1.08999 * 109.48771 * 303.16023 * 4 3 2 36 36 H 1.09006 * 109.49291 * 181.63282 * 5 4 3 37 37 H 1.09004 * 109.49047 * 61.56703 * 5 4 3 38 38 H 1.08999 * 109.47180 * 49.99789 * 7 6 5 39 39 H 1.09001 * 109.47158 * 289.99756 * 7 6 5 40 40 H 1.08996 * 109.46960 * 59.99859 * 8 7 6 41 41 H 1.09001 * 109.47156 * 299.99798 * 8 7 6 42 42 H 0.97007 * 119.99426 * 5.20543 * 11 9 8 43 43 H 1.08004 * 119.96571 * 359.97208 * 13 12 11 44 44 H 1.07995 * 119.93252 * 180.02562 * 14 13 12 45 45 H 1.08003 * 119.96563 * 179.97438 * 15 14 13 46 46 H 0.97003 * 119.99848 * 180.02562 * 21 20 18 47 47 H 1.07995 * 120.07160 * 359.74558 * 26 12 11 48 48 H 1.08996 * 109.49308 * 60.64816 * 27 6 5 49 49 H 1.09001 * 109.49070 * 180.71645 * 27 6 5 50 50 H 1.08996 * 109.49235 * 296.78484 * 28 3 2 51 51 H 1.09001 * 109.48826 * 56.84760 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4691 1.4311 -0.2383 5 6 3.9517 2.8808 -0.1517 6 7 3.2319 3.6940 -1.1419 7 6 3.7217 5.0790 -1.1419 8 6 3.1350 5.8273 -2.3406 9 6 3.6369 7.2483 -2.3402 10 8 4.3893 7.6255 -1.4669 11 7 3.2489 8.1003 -3.3097 12 6 3.7983 9.3856 -3.3727 13 6 3.0240 10.4522 -3.8131 14 6 3.5657 11.7216 -3.8751 15 6 4.8783 11.9348 -3.5002 16 6 5.6578 10.8727 -3.0601 17 8 6.9472 11.0831 -2.6914 18 6 7.3738 12.3618 -2.6593 19 1 6.6770 13.1680 -2.8348 20 6 8.7070 12.6416 -2.4009 21 7 9.5559 11.6594 -2.1876 22 14 9.2981 14.4130 -2.3572 23 1 8.1560 15.3228 -2.6273 24 1 9.8634 14.7133 -1.0172 25 1 10.3449 14.6113 -3.3917 26 6 5.1163 9.5966 -2.9951 27 6 1.7825 3.6479 -0.9036 28 6 1.3000 2.1980 -0.9902 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.6874 1.0337 -1.2295 35 1 3.9807 0.8319 0.5149 36 1 5.0215 2.9209 -0.3568 37 1 3.7579 3.2696 0.8480 38 1 4.8095 5.0797 -1.2100 39 1 3.4150 5.5728 -0.2198 40 1 2.0472 5.8265 -2.2724 41 1 3.4416 5.3335 -3.2627 42 1 2.5887 7.8224 -3.9639 43 1 1.9978 10.2886 -4.1073 44 1 2.9618 12.5490 -4.2173 45 1 5.2990 12.9283 -3.5501 46 1 10.4885 11.8551 -2.0065 47 1 5.7187 8.7701 -2.6482 48 1 1.5641 4.0453 0.0875 49 1 1.2709 4.2470 -1.6568 50 1 1.4936 1.8093 -1.9899 51 1 0.2301 2.1580 -0.7851 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299635595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:05 Heat of formation + Delta-G solvation = -44.763388 kcal Electronic energy + Delta-G solvation = -29618.288747 eV Core-core repulsion = 25517.500881 eV Total energy + Delta-G solvation = -4100.787866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61337 -40.55977 -40.16881 -38.28660 -37.13900 -35.53525 -34.26994 -33.32825 -31.90063 -31.35383 -30.83867 -29.79033 -27.41192 -27.04775 -25.00518 -24.41699 -23.37504 -22.80801 -22.36862 -21.24034 -20.69548 -19.96263 -19.14232 -18.33118 -17.25353 -17.12961 -16.99975 -16.73953 -16.23423 -16.05344 -16.01235 -15.87461 -15.74025 -15.51398 -15.50416 -15.36585 -14.74234 -14.48843 -14.34473 -14.16110 -13.87423 -13.58820 -13.30896 -13.24063 -13.18715 -12.92045 -12.71361 -12.62544 -12.56975 -12.34939 -12.29447 -12.19996 -12.09441 -11.95944 -11.62279 -11.49361 -11.43973 -11.28830 -10.80247 -10.78043 -9.47976 -9.33254 -9.25060 -8.87240 -8.47690 -6.17142 0.41316 0.70032 1.33980 1.42811 1.53741 1.63332 1.97432 2.18639 2.83127 2.86043 2.94168 3.17051 3.46541 3.71399 3.83675 3.92541 4.03971 4.09627 4.13468 4.18744 4.26127 4.36463 4.38832 4.42091 4.45781 4.46902 4.51432 4.59616 4.61326 4.71596 4.73574 4.81485 4.83814 4.88351 4.91070 4.94138 5.01840 5.05823 5.09947 5.12395 5.15744 5.32000 5.40909 5.46707 5.63192 5.74111 5.87211 5.95553 6.02295 6.13744 6.16458 6.20749 6.48919 6.96168 7.20849 7.78839 8.76432 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.001752 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.256688 B =15981.312668 C =17226.600706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 N -0.556 5.556 4 C 0.064 3.936 5 C 0.055 3.945 6 N -0.537 5.537 7 C 0.074 3.926 8 C -0.115 4.115 9 C 0.503 3.497 10 O -0.569 6.569 11 N -0.654 5.654 12 C 0.185 3.815 13 C -0.205 4.205 14 C -0.049 4.049 15 C -0.256 4.256 16 C 0.125 3.875 17 O -0.236 6.236 18 C -0.413 4.413 19 H 0.105 0.895 20 C -0.028 4.028 21 N -0.924 5.924 22 Si 1.024 2.976 23 H -0.247 1.247 24 H -0.270 1.270 25 H -0.267 1.267 26 C -0.214 4.214 27 C 0.048 3.952 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.433 0.567 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.122 0.878 46 H 0.272 0.728 47 H 0.096 0.904 48 H 0.031 0.969 49 H 0.102 0.898 50 H 0.041 0.959 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.844 -20.049 -1.884 30.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 N -0.282 5.282 4 C -0.064 4.064 5 C -0.073 4.073 6 N -0.262 5.262 7 C -0.054 4.054 8 C -0.155 4.155 9 C 0.292 3.708 10 O -0.447 6.447 11 N -0.302 5.302 12 C 0.090 3.910 13 C -0.225 4.225 14 C -0.067 4.067 15 C -0.276 4.276 16 C 0.074 3.926 17 O -0.143 6.143 18 C -0.489 4.489 19 H 0.123 0.877 20 C -0.224 4.224 21 N -0.562 5.562 22 Si 0.843 3.157 23 H -0.170 1.170 24 H -0.195 1.195 25 H -0.192 1.192 26 C -0.236 4.236 27 C -0.079 4.079 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.273 0.727 43 H 0.183 0.817 44 H 0.177 0.823 45 H 0.140 0.860 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.049 0.951 49 H 0.120 0.880 50 H 0.060 0.940 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.950 -20.079 -1.152 29.771 hybrid contribution 0.970 0.580 0.141 1.139 sum -20.980 -19.499 -1.012 28.660 Atomic orbital electron populations 1.21904 0.93975 1.02693 1.02403 1.22117 0.96613 0.88074 1.00918 1.62263 1.04069 1.11913 1.49940 1.22092 0.88319 0.95529 1.00486 1.22170 0.98495 0.93343 0.93337 1.62194 1.04904 1.09691 1.49421 1.21658 0.99757 0.87608 0.96418 1.21569 1.03976 0.87903 1.02026 1.21658 0.80026 0.89028 0.80071 1.90814 1.36975 1.78846 1.38069 1.43362 1.44023 1.11078 1.31728 1.17341 0.89826 0.86003 0.97813 1.20910 1.00839 0.90722 1.10041 1.21051 0.92879 0.97702 0.95102 1.21327 0.97025 0.98819 1.10445 1.19691 0.85356 0.94595 0.92919 1.83961 1.23109 1.30464 1.76758 1.21929 0.95050 0.81107 1.50786 0.87741 1.26715 0.94465 1.05458 0.95807 1.70229 1.04511 1.34568 1.46930 0.84459 0.78913 0.73795 0.78539 1.17035 1.19540 1.19155 1.20050 0.95988 0.94990 1.12549 1.22377 0.87617 0.97398 1.00547 1.22277 0.99234 0.92056 0.93626 0.92325 0.91907 0.91044 0.94756 0.90588 0.94074 0.89494 0.90188 0.95064 0.91912 0.95590 0.85258 0.85475 0.72713 0.81702 0.82276 0.86006 0.91886 0.88599 0.95106 0.88018 0.94050 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.17 71.98 0.66 -0.65 16 2 C 0.05 0.57 6.00 86.30 0.52 1.08 16 3 N -0.56 -8.25 4.86 -895.75 -4.35 -12.60 16 4 C 0.06 0.99 5.58 86.31 0.48 1.47 16 5 C 0.05 1.02 5.61 86.31 0.48 1.51 16 6 N -0.54 -9.85 4.71 -895.68 -4.22 -14.07 16 7 C 0.07 1.66 4.25 86.31 0.37 2.02 16 8 C -0.12 -2.02 5.64 29.85 0.17 -1.85 16 9 C 0.50 14.47 7.56 87.66 0.66 15.13 16 10 O -0.57 -23.87 13.69 -3.06 -0.04 -23.91 16 11 N -0.65 -16.67 5.34 -303.56 -1.62 -18.29 16 12 C 0.18 6.59 6.27 38.14 0.24 6.83 16 13 C -0.20 -6.03 9.96 22.42 0.22 -5.81 16 14 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 15 C -0.26 -11.43 9.13 22.41 0.20 -11.23 16 16 C 0.13 6.75 6.64 22.56 0.15 6.90 16 17 O -0.24 -15.30 9.76 -22.73 -0.22 -15.53 16 18 C -0.41 -25.18 9.44 67.92 0.64 -24.54 16 19 H 0.11 5.78 5.29 -2.91 -0.02 5.77 16 20 C -0.03 -1.64 5.49 84.83 0.47 -1.17 16 21 N -0.92 -59.50 13.67 21.61 0.30 -59.20 16 22 Si 1.02 44.34 29.55 68.60 2.03 46.37 16 23 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 C -0.21 -10.40 8.60 22.51 0.19 -10.21 16 27 C 0.05 0.71 5.41 86.31 0.47 1.18 16 28 C 0.06 0.72 4.93 86.31 0.43 1.15 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.49 6.26 -2.39 -0.01 0.48 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.03 0.38 8.08 -2.38 -0.02 0.37 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.50 8.07 -2.38 -0.02 1.48 16 37 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 1.69 7.98 -2.39 -0.02 1.68 16 39 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 40 H 0.13 1.37 6.49 -2.39 -0.02 1.36 16 41 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.43 6.24 8.82 -92.70 -0.82 5.42 16 43 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 45 H 0.12 5.46 5.71 -2.91 -0.02 5.45 16 46 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 47 H 0.10 5.20 6.43 -2.91 -0.02 5.18 16 48 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.10 1.05 6.34 -2.39 -0.02 1.03 16 50 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.10 0.99 5.99 -2.39 -0.01 0.98 16 Total: -1.00 -86.31 403.87 -1.43 -87.75 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.12 Total: 29.06 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 6.57 Total: -19.57 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -9.90 Total: -104.16 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.26 Total: -39.44 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -86.31 -1.43 -87.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299635595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.983 kcal (2) G-P(sol) polarization free energy of solvation -86.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds