Wall clock time and date at job start Wed Apr 1 2020 04:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46901 * 2 1 4 4 C 1.53003 * 109.47595 * 120.00152 * 2 1 3 5 5 N 1.46499 * 109.46877 * 295.00112 * 4 2 1 6 6 S 1.65598 * 119.99829 * 164.99730 * 5 4 2 7 7 O 1.42091 * 106.40392 * 311.45998 * 6 5 4 8 8 O 1.42103 * 106.40094 * 178.53668 * 6 5 4 9 9 N 1.65602 * 107.21875 * 65.00172 * 6 5 4 10 10 C 1.46502 * 119.99788 * 270.00081 * 9 6 5 11 11 C 1.46503 * 120.00204 * 89.99363 * 9 6 5 12 12 H 1.08999 * 109.46832 * 0.02562 * 11 9 6 13 13 C 1.52994 * 109.47295 * 240.00080 * 11 9 6 14 14 C 1.50701 * 109.46610 * 120.00079 * 11 9 6 15 15 H 1.08001 * 120.00270 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99564 * 180.02562 * 14 11 9 17 17 N 1.31521 * 119.99515 * 180.02562 * 16 14 11 18 18 Si 1.86793 * 120.00199 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.46986 * 269.99956 * 18 16 14 20 20 H 1.48497 * 109.47199 * 29.99781 * 18 16 14 21 21 H 1.48495 * 109.47097 * 149.99779 * 18 16 14 22 22 C 1.53002 * 109.46997 * 240.00238 * 2 1 3 23 23 N 1.46897 * 109.47136 * 65.06328 * 22 2 1 24 24 C 1.46844 * 111.00044 * 199.97852 * 23 22 2 25 25 C 1.53037 * 109.52352 * 174.16262 * 24 23 22 26 26 C 1.53122 * 109.28109 * 59.18155 * 25 24 23 27 27 C 1.53116 * 109.15682 * 302.34772 * 26 25 24 28 28 C 1.46854 * 111.00037 * 75.77451 * 23 22 2 29 29 H 1.08998 * 109.47155 * 304.87170 * 1 2 3 30 30 H 1.08993 * 109.47771 * 64.87347 * 1 2 3 31 31 H 1.09004 * 109.47175 * 184.87380 * 1 2 3 32 32 H 1.08996 * 109.47402 * 175.00079 * 4 2 1 33 33 H 1.08995 * 109.46709 * 54.99930 * 4 2 1 34 34 H 0.96999 * 120.00170 * 344.99984 * 5 4 2 35 35 H 1.08997 * 109.46672 * 269.99866 * 10 9 6 36 36 H 1.09001 * 109.47223 * 29.99719 * 10 9 6 37 37 H 1.08998 * 109.46890 * 149.99999 * 10 9 6 38 38 H 1.08997 * 109.46902 * 60.00434 * 13 11 9 39 39 H 1.09000 * 109.47048 * 180.02562 * 13 11 9 40 40 H 1.08996 * 109.47193 * 300.00023 * 13 11 9 41 41 H 0.96995 * 119.99637 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.47168 * 185.06606 * 22 2 1 43 43 H 1.08997 * 109.46773 * 305.06430 * 22 2 1 44 44 H 1.09005 * 109.46461 * 294.17650 * 24 23 22 45 45 H 1.09004 * 109.46402 * 54.14732 * 24 23 22 46 46 H 1.08997 * 109.50374 * 299.23610 * 25 24 23 47 47 H 1.09008 * 109.50647 * 179.12127 * 25 24 23 48 48 H 1.08993 * 109.52380 * 182.43773 * 26 25 24 49 49 H 1.09007 * 109.57358 * 62.28014 * 26 25 24 50 50 H 1.09001 * 109.50428 * 297.71028 * 27 26 25 51 51 H 1.09003 * 109.50466 * 177.59229 * 27 26 25 52 52 H 1.09001 * 109.45883 * 305.85263 * 28 23 22 53 53 H 1.08999 * 109.46075 * 65.81978 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 16 1.7357 -0.6746 3.9361 7 8 1.0964 -1.9379 3.8162 8 8 1.3328 0.3145 4.8735 9 7 3.3330 -0.9861 4.2426 10 6 3.9195 -2.2672 3.8414 11 6 4.1596 0.0195 4.9148 12 1 3.5546 0.8992 5.1344 13 6 5.3234 0.4149 4.0037 14 6 4.6997 -0.5520 6.2003 15 1 4.4524 -1.5633 6.4877 16 6 5.5097 0.2162 7.0096 17 7 5.9814 -0.2828 8.1313 18 14 5.9369 1.9655 6.5130 19 1 7.1783 1.9594 5.6980 20 1 4.8237 2.5393 5.7151 21 1 6.1483 2.7882 7.7310 22 6 2.0399 -0.7212 -1.2493 23 7 1.6526 0.0383 -2.4455 24 6 1.6890 -0.8111 -3.6428 25 6 1.1425 -0.0306 -4.8404 26 6 1.9925 1.2246 -5.0564 27 6 1.9771 2.0678 -3.7784 28 6 2.4995 1.2265 -2.6116 29 1 -0.3633 0.5875 0.8431 30 1 -0.3634 0.4363 -0.9303 31 1 -0.3634 -1.0240 0.0873 32 1 3.1263 -0.7995 1.2055 33 1 1.6055 -1.7198 1.2951 34 1 1.3471 0.9521 2.3574 35 1 3.8118 -2.9862 4.6535 36 1 3.4060 -2.6403 2.9553 37 1 4.9771 -2.1282 3.6171 38 1 4.9327 0.8283 3.0739 39 1 5.9386 1.1627 4.5040 40 1 5.9282 -0.4649 3.7844 41 1 6.5515 0.2574 8.7005 42 1 3.1262 -0.8005 -1.2051 43 1 1.6044 -1.7193 -1.2958 44 1 2.7173 -1.1116 -3.8439 45 1 1.0773 -1.6981 -3.4777 46 1 0.1097 0.2583 -4.6459 47 1 1.1842 -0.6561 -5.7322 48 1 1.5807 1.8058 -5.8813 49 1 3.0173 0.9359 -5.2900 50 1 0.9574 2.3898 -3.5670 51 1 2.6151 2.9416 -3.9112 52 1 2.4764 1.8195 -1.6973 53 1 3.5239 0.9164 -2.8174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330410916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:32 Heat of formation + Delta-G solvation = -106.306148 kcal Electronic energy + Delta-G solvation = -30384.906716 eV Core-core repulsion = 26416.894107 eV Total energy + Delta-G solvation = -3968.012609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.11579 -38.40858 -38.11128 -37.71063 -36.90108 -34.76875 -34.52210 -32.28399 -31.78194 -31.65527 -27.58602 -27.33336 -26.95635 -26.39212 -24.04535 -23.60381 -22.69956 -21.15193 -20.54173 -20.15153 -18.98692 -18.75533 -18.15071 -17.52440 -17.16952 -16.52867 -16.27968 -15.93012 -15.65518 -15.41578 -15.30229 -15.14699 -15.01298 -14.53932 -14.37898 -14.17973 -14.13411 -13.97375 -13.82894 -13.60233 -13.46525 -13.23848 -13.18575 -13.12648 -13.00906 -12.91094 -12.76650 -12.72167 -12.15904 -12.09397 -12.07882 -11.99433 -11.86874 -11.65608 -11.51471 -11.45256 -11.30819 -11.19838 -11.08596 -10.75735 -10.41646 -9.75755 -9.18654 -8.29341 -6.34343 -0.36346 1.30352 1.39811 1.47924 2.01156 2.32473 2.61967 2.95659 3.05517 3.42018 3.83721 3.89283 3.95504 4.00286 4.02911 4.09774 4.19258 4.36407 4.45566 4.49394 4.56486 4.58884 4.62453 4.63116 4.68351 4.71708 4.74843 4.78565 4.80119 4.86577 4.89415 4.96542 5.00424 5.04718 5.11283 5.11989 5.13711 5.22658 5.24488 5.27818 5.34350 5.41339 5.50327 5.51973 5.54130 5.61857 5.83162 6.14999 6.20882 6.24477 6.35461 6.70375 7.30244 8.87530 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002683 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.928384 B =10435.489868 C =11295.445644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 H 0.082 0.918 4 C 0.116 3.884 5 N -1.113 6.113 6 S 2.798 3.202 7 O -1.008 7.008 8 O -1.017 7.017 9 N -0.991 5.991 10 C 0.102 3.898 11 C 0.242 3.758 12 H 0.044 0.956 13 C -0.156 4.156 14 C -0.526 4.526 15 H 0.039 0.961 16 C 0.013 3.987 17 N -0.946 5.946 18 Si 0.943 3.057 19 H -0.252 1.252 20 H -0.246 1.246 21 H -0.301 1.301 22 C 0.062 3.938 23 N -0.541 5.541 24 C 0.055 3.945 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.116 4.116 28 C 0.052 3.948 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.422 0.578 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.266 0.734 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.030 0.970 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.075 0.925 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 2.801 -30.273 31.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.010 4.010 5 N -0.877 5.877 6 S 2.807 3.193 7 O -0.991 6.991 8 O -1.001 7.001 9 N -0.832 5.832 10 C -0.043 4.043 11 C 0.136 3.864 12 H 0.062 0.938 13 C -0.215 4.215 14 C -0.566 4.566 15 H 0.057 0.943 16 C -0.185 4.185 17 N -0.586 5.586 18 Si 0.769 3.231 19 H -0.177 1.177 20 H -0.170 1.170 21 H -0.229 1.229 22 C -0.067 4.067 23 N -0.265 5.265 24 C -0.073 4.073 25 C -0.152 4.152 26 C -0.159 4.159 27 C -0.153 4.153 28 C -0.076 4.076 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.258 0.742 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.093 0.907 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.723 2.557 -29.486 30.587 hybrid contribution 1.371 0.625 0.511 1.591 sum -6.352 3.182 -28.974 29.833 Atomic orbital electron populations 1.21702 0.94380 1.01539 1.01826 1.21209 0.96969 1.00127 0.91876 0.89960 1.21519 1.00393 0.95241 0.83862 1.55671 1.82882 1.26697 1.22417 1.01177 0.72711 0.72460 0.72992 1.93522 1.74192 1.44112 1.87255 1.93548 1.82344 1.62327 1.61917 1.57367 1.29217 1.24438 1.72200 1.21383 1.00811 0.83105 0.98996 1.18842 0.89985 0.87230 0.90365 0.93792 1.22354 0.98804 1.01163 0.99178 1.21480 1.29598 1.00582 1.04908 0.94297 1.25817 0.95482 1.02629 0.94567 1.70041 1.35407 1.39158 1.13987 0.85965 0.80351 0.79545 0.77268 1.17747 1.17035 1.22889 1.22056 0.98521 0.97158 0.88969 1.61831 1.54002 1.07925 1.02778 1.22132 0.99422 0.95785 0.89980 1.21570 0.99852 0.96729 0.97077 1.21579 0.99984 0.96688 0.97622 1.21569 1.01806 0.97829 0.94129 1.22165 0.93890 0.92159 0.99378 0.93614 0.91181 0.93334 0.90333 0.90625 0.74157 0.95082 0.89475 0.89821 0.90822 0.94187 0.91346 0.92454 0.93778 0.90087 0.95124 0.90467 0.91709 0.90686 0.91286 0.92393 0.91720 0.91024 0.90694 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.96 71.98 0.65 -1.64 16 2 C -0.08 -1.23 2.47 -10.79 -0.03 -1.26 16 3 H 0.08 1.20 6.70 -2.39 -0.02 1.19 16 4 C 0.12 2.17 5.64 86.38 0.49 2.66 16 5 N -1.11 -26.98 5.65 -187.50 -1.06 -28.04 16 6 S 2.80 101.23 6.09 -56.49 -0.34 100.88 16 7 O -1.01 -39.57 16.68 -128.00 -2.14 -41.71 16 8 O -1.02 -45.41 16.70 -128.00 -2.14 -47.55 16 9 N -0.99 -37.88 3.12 -520.45 -1.62 -39.50 16 10 C 0.10 3.35 9.53 127.77 1.22 4.56 16 11 C 0.24 10.81 2.21 44.24 0.10 10.91 16 12 H 0.04 2.09 5.97 -2.39 -0.01 2.08 16 13 C -0.16 -5.72 8.65 71.98 0.62 -5.09 16 14 C -0.53 -29.55 8.95 25.60 0.23 -29.32 16 15 H 0.04 2.44 7.89 -2.91 -0.02 2.42 16 16 C 0.01 0.75 5.45 84.66 0.46 1.21 16 17 N -0.95 -58.83 13.96 21.45 0.30 -58.54 16 18 Si 0.94 43.48 24.38 68.60 1.67 45.15 16 19 H -0.25 -10.55 6.87 99.48 0.68 -9.87 16 20 H -0.25 -10.56 6.53 99.48 0.65 -9.92 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 C 0.06 0.82 4.39 86.30 0.38 1.20 16 23 N -0.54 -7.24 3.96 -896.34 -3.55 -10.79 16 24 C 0.05 0.64 5.43 86.33 0.47 1.11 16 25 C -0.11 -1.18 6.09 30.65 0.19 -0.99 16 26 C -0.12 -1.22 6.00 30.67 0.18 -1.03 16 27 C -0.12 -1.30 6.09 30.64 0.19 -1.11 16 28 C 0.05 0.67 5.29 86.32 0.46 1.12 16 29 H 0.04 0.81 7.67 -2.39 -0.02 0.79 16 30 H 0.07 1.15 7.62 -2.39 -0.02 1.13 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.47 7.75 -2.39 -0.02 1.45 16 34 H 0.42 8.78 8.39 -96.75 -0.81 7.97 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 2.17 7.79 -2.39 -0.02 2.15 16 37 H 0.08 2.52 6.43 -2.39 -0.02 2.50 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 40 H 0.07 2.36 6.66 -2.39 -0.02 2.35 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.04 0.57 8.00 -2.38 -0.02 0.55 16 43 H 0.08 1.03 7.79 -2.39 -0.02 1.01 16 44 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 45 H 0.08 0.86 7.93 -2.38 -0.02 0.84 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 52 H 0.07 0.98 6.65 -2.39 -0.02 0.97 16 53 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -74.02 408.73 -3.30 -77.32 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.01 Total: 20.46 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 5.60 Total: -17.69 kcal Atomic # 7 Polarization: -130.93 SS G_CDS: -5.93 Total: -136.87 kcal Atomic # 8 Polarization: -84.98 SS G_CDS: -4.27 Total: -89.26 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.15 kcal Atomic # 16 Polarization: 101.23 SS G_CDS: -0.34 Total: 100.88 kcal Total: -74.02 -3.30 -77.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330410916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.987 kcal (2) G-P(sol) polarization free energy of solvation -74.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds