Wall clock time and date at job start Wed Apr 1 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.46497 * 120.00293 * 60.00238 * 12 2 1 14 14 S 1.65602 * 119.99856 * 239.99526 * 12 2 1 15 15 O 1.42101 * 106.40175 * 203.54475 * 14 12 2 16 16 O 1.42098 * 106.40534 * 336.46506 * 14 12 2 17 17 N 1.65602 * 107.21891 * 90.00572 * 14 12 2 18 18 C 1.46499 * 120.00018 * 64.99352 * 17 14 12 19 19 C 1.52995 * 109.47101 * 165.00224 * 18 17 14 20 20 H 1.09001 * 109.47290 * 305.00764 * 19 18 17 21 21 C 1.53002 * 109.46925 * 65.00477 * 19 18 17 22 22 C 1.52995 * 109.47410 * 185.00389 * 19 18 17 23 23 N 1.46903 * 109.47540 * 175.00278 * 22 19 18 24 24 C 1.46849 * 110.99491 * 294.21030 * 23 22 19 25 25 C 1.53044 * 109.51798 * 174.16055 * 24 23 22 26 26 C 1.53112 * 109.27972 * 59.18030 * 25 24 23 27 27 C 1.53124 * 109.16113 * 302.34364 * 26 25 24 28 28 C 1.46849 * 110.99921 * 170.00244 * 23 22 19 29 29 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 30 30 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 31 31 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47299 * 89.99680 * 13 12 2 34 34 H 1.09003 * 109.47539 * 209.99447 * 13 12 2 35 35 H 1.08994 * 109.47071 * 329.99887 * 13 12 2 36 36 H 0.97001 * 120.00106 * 245.00798 * 17 14 12 37 37 H 1.08996 * 109.47589 * 285.00912 * 18 17 14 38 38 H 1.09005 * 109.46587 * 45.00637 * 18 17 14 39 39 H 1.09005 * 109.47216 * 179.97438 * 21 19 18 40 40 H 1.08990 * 109.47097 * 299.99800 * 21 19 18 41 41 H 1.09001 * 109.46903 * 60.00049 * 21 19 18 42 42 H 1.08999 * 109.47447 * 295.00641 * 22 19 18 43 43 H 1.09006 * 109.46851 * 55.00075 * 22 19 18 44 44 H 1.08998 * 109.46316 * 294.16910 * 24 23 22 45 45 H 1.08992 * 109.46436 * 54.14484 * 24 23 22 46 46 H 1.09000 * 109.50307 * 299.23587 * 25 24 23 47 47 H 1.09003 * 109.50271 * 179.12381 * 25 24 23 48 48 H 1.09003 * 109.52385 * 182.43742 * 26 25 24 49 49 H 1.08998 * 109.52604 * 62.25097 * 26 25 24 50 50 H 1.08993 * 109.50060 * 297.71532 * 27 26 25 51 51 H 1.09004 * 109.50313 * 177.59686 * 27 26 25 52 52 H 1.08990 * 109.46285 * 305.85153 * 28 23 22 53 53 H 1.08998 * 109.46368 * 65.82341 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 7 1.9606 0.8093 3.3998 18 6 1.1507 -0.0349 4.2817 19 6 0.6085 0.8079 5.4377 20 1 1.4363 1.3008 5.9476 21 6 -0.3548 1.8635 4.8911 22 6 -0.1325 -0.0964 6.4245 23 7 -0.5494 0.6910 7.5925 24 6 0.6155 1.1643 8.3510 25 6 0.1512 2.0978 9.4714 26 6 -0.8091 1.3419 10.3938 27 6 -1.9890 0.8181 9.5703 28 6 -1.4627 -0.0783 8.4471 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7173 1.1669 -3.4844 33 1 2.4156 -2.7377 0.9720 34 1 1.6236 -2.2851 2.5004 35 1 0.6904 -2.3001 0.9848 36 1 1.9053 1.7753 3.4681 37 1 0.3187 -0.4564 3.7178 38 1 1.7667 -0.8421 4.6782 39 1 -0.7415 2.4637 5.7148 40 1 0.1730 2.5078 4.1882 41 1 -1.1826 1.3706 4.3813 42 1 -1.0117 -0.5202 5.9394 43 1 0.5284 -0.9015 6.7462 44 1 1.1389 0.3112 8.7827 45 1 1.2883 1.7037 7.6844 46 1 -0.3602 2.9582 9.0398 47 1 1.0147 2.4367 10.0440 48 1 -1.1760 2.0154 11.1684 49 1 -0.2868 0.5042 10.8558 50 1 -2.5341 1.6582 9.1403 51 1 -2.6547 0.2425 10.2136 52 1 -2.2993 -0.4415 7.8502 53 1 -0.9295 -0.9256 8.8782 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330410917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:35 Heat of formation + Delta-G solvation = -111.223950 kcal Electronic energy + Delta-G solvation = -30294.545884 eV Core-core repulsion = 26326.320022 eV Total energy + Delta-G solvation = -3968.225861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.16798 -38.35249 -37.94285 -37.69233 -36.87122 -34.77109 -34.50746 -32.28814 -31.62194 -30.89417 -27.63523 -27.26756 -26.99142 -26.40571 -24.09153 -23.60316 -22.59182 -21.04547 -20.51853 -20.17960 -18.78628 -18.54692 -18.15606 -17.58489 -16.99551 -16.50523 -16.21891 -15.85850 -15.76754 -15.33634 -15.18908 -15.06769 -14.79415 -14.56362 -14.46662 -14.11950 -13.97344 -13.77948 -13.67361 -13.37937 -13.20943 -13.16659 -13.13567 -13.00895 -12.95942 -12.77162 -12.73436 -12.56661 -12.25277 -12.15095 -12.09101 -12.04089 -11.92898 -11.78930 -11.71431 -11.52623 -11.20934 -11.12141 -11.04550 -10.50572 -10.41775 -9.64985 -9.19802 -8.10647 -6.23854 -0.29552 1.42120 1.44430 1.53756 2.06604 2.44065 2.66025 2.95055 3.17579 3.46628 3.83120 3.89753 3.97561 3.98841 4.08866 4.10528 4.14249 4.36018 4.47299 4.50955 4.55864 4.64907 4.67194 4.70598 4.73897 4.79575 4.85095 4.87917 4.90541 5.00010 5.01383 5.04222 5.07327 5.10865 5.11134 5.17323 5.21463 5.23252 5.27507 5.33957 5.40091 5.51513 5.53567 5.63303 5.73246 5.90003 6.07558 6.18305 6.21790 6.24058 6.32604 6.83828 7.44976 8.93390 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.002356 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.875272 B =11882.855090 C =12255.444397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.537 4.537 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.996 5.996 13 C 0.103 3.897 14 S 2.797 3.203 15 O -1.011 7.011 16 O -1.020 7.020 17 N -1.117 6.117 18 C 0.118 3.882 19 C -0.086 4.086 20 H 0.078 0.922 21 C -0.134 4.134 22 C 0.063 3.937 23 N -0.539 5.539 24 C 0.048 3.952 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.114 4.114 28 C 0.054 3.946 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.420 0.580 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.076 0.924 52 H 0.078 0.922 53 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -0.934 24.861 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.838 5.838 13 C -0.043 4.043 14 S 2.806 3.194 15 O -0.994 6.994 16 O -1.004 7.004 17 N -0.880 5.880 18 C -0.008 4.008 19 C -0.106 4.106 20 H 0.096 0.904 21 C -0.192 4.192 22 C -0.066 4.066 23 N -0.264 5.264 24 C -0.079 4.079 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.074 4.074 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.255 0.745 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.096 0.904 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.163 -0.585 24.551 25.581 hybrid contribution 0.553 -0.548 -0.930 1.213 sum -6.610 -1.133 23.621 24.554 Atomic orbital electron populations 1.21893 0.96680 1.00234 1.00492 1.18393 0.92332 0.91267 0.81114 0.95807 1.21653 1.31618 1.12871 0.91543 0.92680 1.25630 0.95317 0.95715 1.01636 1.69973 1.37401 1.23577 1.24297 0.85611 0.78747 0.78427 0.79151 1.19436 1.20985 1.20109 1.57544 1.69967 1.21023 1.35251 1.21361 1.01716 0.80380 1.00837 1.01171 0.73609 0.72289 0.72325 1.93508 1.69925 1.61317 1.74623 1.93547 1.75986 1.57461 1.73389 1.55755 1.62156 1.18039 1.52086 1.21459 0.94770 0.93097 0.91470 1.21266 0.98590 0.96551 0.94179 0.90352 1.21678 0.98561 0.98256 1.00664 1.22055 0.99573 0.93911 0.91023 1.61880 1.16569 1.39715 1.08235 1.22193 0.92108 0.98006 0.95622 1.21569 0.99534 0.98252 0.95926 1.21581 0.96502 0.99925 0.97836 1.21569 0.97720 0.99650 0.96250 1.22126 0.96063 0.94547 0.94637 0.94447 0.91668 0.93759 0.92672 0.94223 0.90152 0.90230 0.74451 0.90674 0.90661 0.91291 0.93607 0.92751 0.89620 0.94432 0.95354 0.90736 0.91660 0.90993 0.91143 0.92400 0.91665 0.90562 0.90354 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.95 71.98 0.64 -5.23 16 2 C 0.27 13.36 2.62 44.25 0.12 13.48 16 3 H 0.02 1.34 6.91 -2.39 -0.02 1.32 16 4 C -0.54 -29.17 8.37 25.60 0.21 -28.96 16 5 H 0.05 2.99 7.65 -2.91 -0.02 2.96 16 6 C 0.02 0.92 5.31 84.65 0.45 1.37 16 7 N -0.91 -51.37 11.33 21.45 0.24 -51.13 16 8 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 N -1.00 -40.27 3.12 -520.45 -1.62 -41.90 16 13 C 0.10 3.44 9.53 127.77 1.22 4.65 16 14 S 2.80 107.87 6.09 -56.49 -0.34 107.53 16 15 O -1.01 -40.87 16.68 -128.00 -2.14 -43.00 16 16 O -1.02 -48.57 16.70 -128.00 -2.14 -50.70 16 17 N -1.12 -31.05 5.93 -187.50 -1.11 -32.16 16 18 C 0.12 2.58 5.64 86.38 0.49 3.07 16 19 C -0.09 -1.52 2.42 -10.80 -0.03 -1.55 16 20 H 0.08 1.41 6.22 -2.39 -0.01 1.40 16 21 C -0.13 -2.47 8.95 71.98 0.64 -1.83 16 22 C 0.06 0.98 4.35 86.30 0.38 1.35 16 23 N -0.54 -8.19 4.11 -896.36 -3.68 -11.88 16 24 C 0.05 0.72 5.30 86.33 0.46 1.17 16 25 C -0.12 -1.45 6.09 30.65 0.19 -1.26 16 26 C -0.12 -1.33 6.00 30.67 0.18 -1.15 16 27 C -0.11 -1.29 6.09 30.65 0.19 -1.10 16 28 C 0.05 0.71 5.46 86.33 0.47 1.18 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 3.26 6.08 -2.38 -0.01 3.24 16 31 H 0.04 1.81 6.66 -2.39 -0.02 1.79 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.13 7.79 -2.39 -0.02 2.11 16 35 H 0.08 2.53 6.43 -2.39 -0.02 2.51 16 36 H 0.42 10.56 7.41 -96.74 -0.72 9.84 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.63 7.75 -2.38 -0.02 1.61 16 39 H 0.07 1.25 7.75 -2.38 -0.02 1.23 16 40 H 0.04 0.90 6.90 -2.39 -0.02 0.88 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 1.24 7.99 -2.39 -0.02 1.22 16 43 H 0.04 0.58 8.12 -2.38 -0.02 0.56 16 44 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 1.16 6.12 -2.39 -0.01 1.14 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 52 H 0.08 0.96 8.01 -2.39 -0.02 0.95 16 53 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -67.84 413.71 -3.00 -70.84 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.16 Total: 21.65 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 5.61 Total: -14.81 kcal Atomic # 7 Polarization: -130.89 SS G_CDS: -6.18 Total: -137.06 kcal Atomic # 8 Polarization: -89.44 SS G_CDS: -4.27 Total: -93.71 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 107.87 SS G_CDS: -0.34 Total: 107.53 kcal Total: -67.84 -3.00 -70.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330410917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.384 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds