Wall clock time and date at job start Wed Apr 1 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47267 * 2 1 4 4 C 1.46495 * 119.99332 * 274.99942 * 3 2 1 5 5 C 1.50699 * 109.47220 * 274.07181 * 4 3 2 6 6 H 1.08003 * 120.00053 * 4.90829 * 5 4 3 7 7 C 1.37881 * 120.00165 * 184.91438 * 5 4 3 8 8 N 1.31508 * 119.99948 * 5.21177 * 7 5 4 9 9 Si 1.86799 * 119.99972 * 185.21072 * 7 5 4 10 10 H 1.48506 * 109.47166 * 64.99663 * 9 7 5 11 11 H 1.48502 * 109.47256 * 184.99581 * 9 7 5 12 12 H 1.48497 * 109.47096 * 305.00001 * 9 7 5 13 13 S 1.65598 * 120.00025 * 94.99380 * 3 2 1 14 14 O 1.42098 * 106.40504 * 341.38621 * 13 3 2 15 15 O 1.42103 * 106.40056 * 208.46425 * 13 3 2 16 16 N 1.65605 * 107.21405 * 94.92829 * 13 3 2 17 17 C 1.46494 * 120.00100 * 86.79330 * 16 13 3 18 18 C 1.46502 * 119.99520 * 266.78840 * 16 13 3 19 19 H 1.09003 * 109.57759 * 4.94690 * 18 16 13 20 20 C 1.53127 * 109.51967 * 125.09946 * 18 16 13 21 21 C 1.53036 * 109.27852 * 177.55892 * 20 18 16 22 22 N 1.46846 * 109.52189 * 300.82042 * 21 20 18 23 23 C 1.46902 * 110.99942 * 185.83814 * 22 21 20 24 24 C 1.53002 * 109.46879 * 66.31674 * 23 22 21 25 25 C 1.46842 * 111.19811 * 61.74456 * 22 21 20 26 26 H 1.08998 * 109.46604 * 58.27504 * 25 22 21 27 27 C 1.53001 * 109.46314 * 178.24200 * 25 22 21 28 28 C 1.53044 * 109.52311 * 298.25559 * 25 22 21 29 29 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47434 * 299.99854 * 1 2 3 31 31 H 1.08995 * 109.47136 * 60.00548 * 1 2 3 32 32 H 1.08999 * 109.47434 * 239.99358 * 2 1 3 33 33 H 1.09007 * 109.46908 * 119.99820 * 2 1 3 34 34 H 1.08990 * 109.47892 * 34.07463 * 4 3 2 35 35 H 1.09004 * 109.47063 * 154.07751 * 4 3 2 36 36 H 0.97002 * 119.99905 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47115 * 269.99398 * 17 16 13 38 38 H 1.08996 * 109.47496 * 30.00138 * 17 16 13 39 39 H 1.09005 * 109.46853 * 149.99653 * 17 16 13 40 40 H 1.09003 * 109.50149 * 57.61276 * 20 18 16 41 41 H 1.09005 * 109.53353 * 297.52022 * 20 18 16 42 42 H 1.09003 * 109.45768 * 180.80611 * 21 20 18 43 43 H 1.08997 * 109.45258 * 60.83221 * 21 20 18 44 44 H 1.09000 * 109.47424 * 186.31364 * 23 22 21 45 45 H 1.08998 * 109.47200 * 306.32114 * 23 22 21 46 46 H 1.09000 * 109.47581 * 300.00097 * 24 23 22 47 47 H 1.09003 * 109.47328 * 59.99687 * 24 23 22 48 48 H 1.09001 * 109.47143 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.47374 * 52.89215 * 27 25 22 50 50 H 1.09001 * 109.47605 * 172.89436 * 27 25 22 51 51 H 1.08998 * 109.46924 * 292.89279 * 27 25 22 52 52 H 1.08997 * 109.50249 * 299.23801 * 28 25 22 53 53 H 1.09002 * 109.53213 * 179.14345 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1085 -1.2639 5 6 3.5040 1.8064 -1.8711 6 1 4.1544 1.0792 -1.4079 7 6 3.9050 2.4584 -3.0179 8 7 3.1598 3.4163 -3.5245 9 14 5.5068 1.9810 -3.8521 10 1 5.4047 0.5894 -4.3604 11 1 5.7688 2.9040 -4.9856 12 1 6.6202 2.0701 -2.8736 13 16 2.4121 2.1202 1.4287 14 8 1.7789 1.3703 2.4562 15 8 2.1940 3.5110 1.2344 16 7 4.0425 1.9285 1.6466 17 6 4.9780 2.8928 1.0627 18 6 4.5492 0.7945 2.4235 19 1 3.7208 0.1427 2.7011 20 6 5.5590 0.0086 1.5825 21 6 6.1300 -1.1382 2.4197 22 7 6.7820 -0.5939 3.6176 23 6 7.4615 -1.6537 4.3747 24 6 8.6277 -2.2019 3.5499 25 6 5.8216 0.1248 4.4647 26 1 5.0158 -0.5500 4.7533 27 6 6.5318 0.6364 5.7196 28 6 5.2414 1.3094 3.6884 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.3716 1.7975 -1.9512 35 1 2.0758 3.1794 -1.0780 36 1 3.4418 3.8747 -4.3315 37 1 5.2581 2.5666 0.0611 38 1 4.5024 3.8720 1.0062 39 1 5.8696 2.9575 1.6864 40 1 6.3676 0.6705 1.2723 41 1 5.0621 -0.3967 0.7010 42 1 6.8599 -1.6911 1.8284 43 1 5.3225 -1.8070 2.7178 44 1 7.8396 -1.2454 5.3119 45 1 6.7568 -2.4577 4.5866 46 1 8.2497 -2.6102 2.6127 47 1 9.3325 -1.3979 3.3379 48 1 9.1322 -2.9880 4.1118 49 1 7.4135 1.2083 5.4305 50 1 5.8540 1.2752 6.2858 51 1 6.8339 -0.2098 6.3365 52 1 6.0451 1.9917 3.4115 53 1 4.5173 1.8340 4.3118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337083721.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:59 Heat of formation + Delta-G solvation = -97.097692 kcal Electronic energy + Delta-G solvation = -31968.246363 eV Core-core repulsion = 28000.633063 eV Total energy + Delta-G solvation = -3967.613301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63238 -38.38434 -37.66953 -37.45146 -36.90080 -34.66822 -33.90619 -33.17242 -31.53408 -30.16815 -28.49855 -28.01720 -27.22799 -24.91090 -24.88229 -23.30313 -22.78324 -21.87399 -20.54756 -19.80150 -18.69356 -18.64689 -18.18452 -17.43282 -17.00506 -16.56033 -16.31239 -15.93094 -15.56939 -15.32442 -15.26455 -14.86753 -14.78484 -14.66505 -14.41340 -14.24219 -13.86939 -13.66085 -13.54789 -13.32821 -13.26114 -13.19315 -13.05101 -12.93623 -12.82925 -12.74990 -12.73377 -12.68837 -12.61128 -12.48713 -12.24303 -12.15006 -12.05516 -11.90559 -11.79576 -11.74317 -11.60462 -11.26669 -11.25682 -10.53287 -9.92199 -9.71827 -9.21211 -8.12678 -6.25140 -0.30988 1.46681 1.47150 1.54865 1.95632 2.45137 2.52995 2.93043 3.19223 3.35911 3.65435 3.82134 3.91725 3.97295 4.08313 4.13873 4.30257 4.36200 4.38714 4.41878 4.46941 4.51891 4.53343 4.61716 4.67114 4.68522 4.73648 4.81327 4.83717 4.88759 4.90380 4.96098 5.03560 5.08811 5.11874 5.13370 5.18387 5.21279 5.25854 5.28558 5.37024 5.38403 5.42586 5.50740 5.52982 5.69826 5.80041 6.02966 6.15138 6.20923 6.25250 6.86437 7.44263 8.95408 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010437 B = 0.004460 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.099196 B = 6277.106903 C = 7567.166904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.262 3.738 5 C -0.532 4.532 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.261 1.261 13 S 2.791 3.209 14 O -1.003 7.003 15 O -1.019 7.019 16 N -0.993 5.993 17 C 0.093 3.907 18 C 0.148 3.852 19 H 0.084 0.916 20 C -0.119 4.119 21 C 0.061 3.939 22 N -0.541 5.541 23 C 0.045 3.955 24 C -0.146 4.146 25 C 0.085 3.915 26 H 0.039 0.961 27 C -0.141 4.141 28 C -0.117 4.117 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.088 0.912 45 H 0.032 0.968 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.080 0.920 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 -11.777 15.307 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.571 4.571 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.186 1.186 13 S 2.801 3.199 14 O -0.987 6.987 15 O -1.003 7.003 16 N -0.833 5.833 17 C -0.052 4.052 18 C 0.043 3.957 19 H 0.102 0.898 20 C -0.159 4.159 21 C -0.068 4.068 22 N -0.267 5.267 23 C -0.082 4.082 24 C -0.203 4.203 25 C -0.024 4.024 26 H 0.057 0.943 27 C -0.199 4.199 28 C -0.156 4.156 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.098 0.902 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.508 -10.837 15.580 20.798 hybrid contribution -0.090 -0.370 -1.071 1.137 sum 8.418 -11.207 14.508 20.173 Atomic orbital electron populations 1.22197 0.95932 1.03306 1.01241 1.21239 0.94611 0.81429 1.03113 1.57712 1.79287 1.23886 1.22848 1.18713 0.96566 0.90687 0.80201 1.21722 1.02439 1.23148 1.09794 0.90828 1.25750 1.00383 0.94377 0.97928 1.70077 1.40476 1.23899 1.22454 0.85663 0.80149 0.78058 0.78173 1.19521 1.21769 1.18584 1.01377 0.73459 0.72396 0.72636 1.93495 1.75055 1.73345 1.56781 1.93507 1.85448 1.34493 1.86841 1.57626 1.24385 1.36012 1.65256 1.21487 0.93964 0.90809 0.98921 1.21043 0.97212 0.86294 0.91198 0.89773 1.21897 0.98486 0.97595 0.97907 1.22069 0.97474 0.95306 0.91938 1.62029 1.29940 1.27476 1.07216 1.22215 0.95989 0.92227 0.97755 1.21781 0.97692 1.00845 0.99996 1.21552 0.93205 0.94395 0.93221 0.94343 1.21872 1.00966 1.01645 0.95405 1.21989 1.00074 0.98401 0.95181 0.88890 0.93749 0.93251 0.89945 0.90031 0.96497 0.96694 0.92703 0.92561 0.92419 0.88716 0.90772 0.91467 0.89212 0.94674 0.89339 0.94974 0.93020 0.92519 0.91095 0.91704 0.91633 0.91256 0.90171 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 10.24 71.98 0.74 -4.46 16 2 C 0.12 4.13 6.08 86.38 0.53 4.66 16 3 N -1.00 -41.66 2.82 -519.86 -1.47 -43.13 16 4 C 0.26 13.21 5.45 85.63 0.47 13.67 16 5 C -0.53 -26.97 8.61 25.60 0.22 -26.75 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.80 5.45 84.66 0.46 1.26 16 8 N -0.93 -53.47 13.29 21.45 0.28 -53.19 16 9 Si 0.95 41.19 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 S 2.79 115.40 6.07 -56.49 -0.34 115.06 16 14 O -1.00 -40.87 15.47 -128.00 -1.98 -42.85 16 15 O -1.02 -50.30 15.47 -128.00 -1.98 -52.29 16 16 N -0.99 -34.08 3.14 -516.11 -1.62 -35.70 16 17 C 0.09 3.18 9.51 127.77 1.21 4.39 16 18 C 0.15 4.15 2.55 45.07 0.11 4.27 16 19 H 0.08 2.44 6.93 -2.39 -0.02 2.43 16 20 C -0.12 -3.02 5.34 30.65 0.16 -2.86 16 21 C 0.06 1.24 5.29 86.33 0.46 1.70 16 22 N -0.54 -10.40 4.49 -871.11 -3.91 -14.31 16 23 C 0.05 0.68 5.41 86.30 0.47 1.15 16 24 C -0.15 -1.99 9.85 71.98 0.71 -1.28 16 25 C 0.09 1.68 2.44 44.94 0.11 1.79 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 C -0.14 -2.18 8.54 71.98 0.61 -1.57 16 28 C -0.12 -2.79 4.75 30.65 0.15 -2.64 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 33 H 0.08 2.45 7.47 -2.38 -0.02 2.43 16 34 H 0.02 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.02 0.87 6.98 -2.39 -0.02 0.85 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.06 2.09 7.27 -2.39 -0.02 2.07 16 38 H 0.06 2.18 7.05 -2.39 -0.02 2.16 16 39 H 0.09 2.55 6.64 -2.38 -0.02 2.54 16 40 H 0.07 1.96 7.47 -2.39 -0.02 1.94 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.09 1.68 6.23 -2.39 -0.01 1.67 16 43 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 1.17 5.79 -2.39 -0.01 1.15 16 45 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 46 H 0.05 0.75 6.45 -2.39 -0.02 0.73 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 51 H 0.07 0.87 6.53 -2.39 -0.02 0.86 16 52 H 0.08 1.89 6.79 -2.39 -0.02 1.87 16 53 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -65.13 412.65 -1.72 -66.85 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.86 Total: 23.02 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.41 Total: -6.66 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -6.71 Total: -146.34 kcal Atomic # 8 Polarization: -91.17 SS G_CDS: -3.96 Total: -95.14 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 115.40 SS G_CDS: -0.34 Total: 115.06 kcal Total: -65.13 -1.72 -66.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337083721.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.250 kcal (2) G-P(sol) polarization free energy of solvation -65.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds