Wall clock time and date at job start Wed Apr 1 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47524 * 2 1 4 4 C 1.46505 * 120.00253 * 279.12892 * 3 2 1 5 5 C 1.50695 * 109.47327 * 275.00220 * 4 3 2 6 6 H 1.08008 * 119.99784 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00193 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47217 * 119.99979 * 9 7 5 12 12 H 1.48504 * 109.46904 * 239.99597 * 9 7 5 13 13 S 1.65600 * 120.00084 * 99.13104 * 3 2 1 14 14 O 1.42098 * 106.40367 * 151.60057 * 13 3 2 15 15 O 1.42098 * 106.40030 * 18.67308 * 13 3 2 16 16 N 1.65606 * 107.21733 * 265.13824 * 13 3 2 17 17 C 1.46504 * 119.99760 * 276.89588 * 16 13 3 18 18 C 1.46502 * 120.00170 * 96.89031 * 16 13 3 19 19 H 1.09002 * 109.51886 * 302.05809 * 18 16 13 20 20 C 1.53112 * 109.52459 * 181.86590 * 18 16 13 21 21 C 1.53045 * 109.27796 * 297.75250 * 20 18 16 22 22 N 1.46823 * 109.51340 * 300.81908 * 21 20 18 23 23 C 1.46909 * 110.98280 * 185.84330 * 22 21 20 24 24 C 1.53000 * 109.46839 * 45.78608 * 23 22 21 25 25 C 1.46846 * 111.21158 * 61.75215 * 22 21 20 26 26 H 1.09001 * 109.46068 * 58.26068 * 25 22 21 27 27 C 1.53001 * 109.46214 * 178.23586 * 25 22 21 28 28 C 1.53038 * 109.51419 * 298.25113 * 25 22 21 29 29 H 1.09003 * 109.46527 * 305.03342 * 1 2 3 30 30 H 1.09000 * 109.46913 * 65.02769 * 1 2 3 31 31 H 1.08998 * 109.47074 * 185.03342 * 1 2 3 32 32 H 1.09004 * 109.46934 * 239.99716 * 2 1 3 33 33 H 1.09000 * 109.47108 * 120.00425 * 2 1 3 34 34 H 1.09006 * 109.46517 * 34.99665 * 4 3 2 35 35 H 1.09001 * 109.47316 * 154.99593 * 4 3 2 36 36 H 0.96991 * 120.00297 * 179.97438 * 8 7 5 37 37 H 1.09006 * 109.46727 * 275.69955 * 17 16 13 38 38 H 1.08996 * 109.47323 * 35.69938 * 17 16 13 39 39 H 1.09001 * 109.47040 * 155.70422 * 17 16 13 40 40 H 1.09002 * 109.50649 * 57.68688 * 20 18 16 41 41 H 1.08993 * 109.50810 * 177.76956 * 20 18 16 42 42 H 1.08999 * 109.46381 * 60.83501 * 21 20 18 43 43 H 1.09002 * 109.45796 * 180.80274 * 21 20 18 44 44 H 1.09000 * 109.46797 * 165.78602 * 23 22 21 45 45 H 1.09000 * 109.47159 * 285.79092 * 23 22 21 46 46 H 1.09002 * 109.47305 * 179.97438 * 24 23 22 47 47 H 1.08994 * 109.47578 * 300.00029 * 24 23 22 48 48 H 1.09003 * 109.47330 * 60.00136 * 24 23 22 49 49 H 1.08998 * 109.46889 * 180.02562 * 27 25 22 50 50 H 1.08995 * 109.47366 * 300.01805 * 27 25 22 51 51 H 1.09001 * 109.46814 * 60.02402 * 27 25 22 52 52 H 1.08995 * 109.50055 * 179.11402 * 28 25 22 53 53 H 1.09003 * 109.49879 * 299.19148 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0729 2.1389 -1.2527 5 6 3.3640 1.8350 -1.9679 6 1 4.0733 1.1465 -1.5327 7 6 3.6403 2.4366 -3.1774 8 7 2.7768 3.2752 -3.7071 9 14 5.2410 2.0604 -4.0636 10 1 6.0342 1.0930 -3.2635 11 1 4.9436 1.4754 -5.3958 12 1 6.0179 3.3142 -4.2359 13 16 2.5091 2.0859 1.4160 14 8 3.4880 3.0540 1.0642 15 8 2.7579 1.0244 2.3273 16 7 1.2158 2.9263 2.0190 17 6 0.9276 4.2770 1.5300 18 6 0.3600 2.3192 3.0414 19 1 -0.0528 1.3843 2.6625 20 6 -0.7805 3.2795 3.3902 21 6 -0.1958 4.5663 3.9772 22 7 0.5840 4.2468 5.1795 23 6 1.0453 5.4709 5.8481 24 6 -0.1110 6.4688 5.9392 25 6 1.7133 3.3637 4.8612 26 1 2.3518 3.8436 4.1195 27 6 2.5222 3.0925 6.1313 28 6 1.1856 2.0411 4.3005 29 1 -0.3632 0.5900 0.8415 30 1 -0.3633 0.4339 -0.9316 31 1 -0.3633 -1.0237 0.0902 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.2317 1.8557 -1.8854 35 1 2.0206 3.2056 -1.0346 36 1 2.9713 3.6987 -4.5577 37 1 1.5330 4.9988 2.0784 38 1 1.1640 4.3370 0.4677 39 1 -0.1287 4.5001 1.6804 40 1 -1.3464 3.5151 2.4889 41 1 -1.4393 2.8117 4.1216 42 1 0.4517 5.0405 3.2397 43 1 -1.0061 5.2465 4.2398 44 1 1.3949 5.2272 6.8513 45 1 1.8615 5.9119 5.2759 46 1 0.2311 7.3769 6.4357 47 1 -0.4607 6.7124 4.9361 48 1 -0.9272 6.0278 6.5114 49 1 3.3606 2.4374 5.8950 50 1 2.8984 4.0344 6.5304 51 1 1.8838 2.6126 6.8730 52 1 2.0244 1.3918 4.0496 53 1 0.5587 1.5536 5.0472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337083723.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:06 Heat of formation + Delta-G solvation = -71.432577 kcal Electronic energy + Delta-G solvation = -32361.256466 eV Core-core repulsion = 28394.756088 eV Total energy + Delta-G solvation = -3966.500378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07760 -38.38672 -37.70749 -37.26246 -36.86633 -34.73625 -34.19062 -32.72454 -31.54997 -30.62280 -28.57166 -28.51759 -26.74521 -25.15823 -24.99230 -23.23210 -22.65179 -21.97041 -20.90769 -19.68596 -18.83204 -18.42483 -18.15489 -17.41099 -17.08342 -16.70542 -16.31270 -16.01673 -15.62804 -15.52649 -15.41286 -14.96079 -14.76875 -14.71033 -14.66268 -14.12237 -13.82586 -13.69836 -13.53675 -13.39845 -13.22489 -13.11894 -13.06104 -13.01334 -12.82901 -12.73613 -12.70701 -12.65951 -12.59234 -12.46216 -12.33508 -12.20158 -11.94417 -11.91707 -11.76766 -11.74286 -11.63924 -11.31195 -10.91877 -10.61324 -9.97097 -9.77859 -9.13094 -8.22692 -6.33868 -0.35390 1.35364 1.37971 1.49510 1.99615 2.37303 2.52592 2.96173 3.07808 3.37078 3.63758 3.78723 3.87641 3.96466 4.08142 4.19919 4.28718 4.30661 4.37467 4.40735 4.45499 4.47108 4.52795 4.56923 4.62945 4.67788 4.73679 4.77157 4.79185 4.82769 4.86870 4.99075 5.01366 5.02302 5.09494 5.13441 5.14899 5.15559 5.20989 5.24686 5.28103 5.37697 5.42980 5.45303 5.52046 5.68891 5.72769 5.99356 6.10100 6.19350 6.24779 6.73830 7.34671 8.84834 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003611 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.207782 B = 7752.482379 C = 8041.932921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.998 5.998 4 C 0.276 3.724 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.267 1.267 12 H -0.279 1.279 13 S 2.787 3.213 14 O -1.016 7.016 15 O -0.996 6.996 16 N -0.998 5.998 17 C 0.087 3.913 18 C 0.148 3.852 19 H 0.086 0.914 20 C -0.108 4.108 21 C 0.017 3.983 22 N -0.526 5.526 23 C 0.045 3.955 24 C -0.149 4.149 25 C 0.082 3.918 26 H 0.007 0.993 27 C -0.145 4.145 28 C -0.153 4.153 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.016 0.984 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.076 0.924 52 H 0.084 0.916 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 1.180 18.298 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.018 4.018 3 N -0.839 5.839 4 C 0.153 3.847 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.204 1.204 13 S 2.798 3.202 14 O -1.000 7.000 15 O -0.980 6.980 16 N -0.839 5.839 17 C -0.057 4.057 18 C 0.043 3.957 19 H 0.103 0.897 20 C -0.147 4.147 21 C -0.110 4.110 22 N -0.252 5.252 23 C -0.083 4.083 24 C -0.206 4.206 25 C -0.027 4.027 26 H 0.025 0.975 27 C -0.203 4.203 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.034 0.966 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.102 0.898 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.235 0.982 18.845 21.962 hybrid contribution 1.538 0.503 -1.695 2.343 sum -9.698 1.485 17.150 19.758 Atomic orbital electron populations 1.22151 0.94254 1.03257 1.02095 1.21383 0.95763 0.81406 1.03218 1.57709 1.81039 1.22389 1.22775 1.18557 0.95997 0.89538 0.80622 1.21847 1.04964 1.26557 1.05429 0.93492 1.25691 1.00189 0.94700 0.97929 1.69993 1.36920 1.29792 1.19421 0.85590 0.79744 0.78232 0.78667 1.19687 1.19242 1.20435 1.01619 0.73723 0.72602 0.72289 1.93549 1.58782 1.63296 1.84343 1.93423 1.85095 1.56792 1.62679 1.57836 1.48182 1.25949 1.51977 1.21902 1.04167 0.81943 0.97717 1.21158 0.91114 0.97038 0.86376 0.89656 1.21810 0.95998 0.94960 1.01907 1.22935 0.98664 0.97900 0.91494 1.62132 1.21977 1.15421 1.25656 1.22187 0.97083 0.89773 0.99250 1.21893 0.98134 0.98184 1.02394 1.21514 0.91218 0.93852 0.96080 0.97452 1.21883 0.99460 1.01933 0.97021 1.22552 1.02070 0.97163 0.97448 0.91969 0.93194 0.89316 0.91237 0.89516 0.95375 0.96815 0.92337 0.93106 0.93595 0.86463 0.89150 0.88125 0.93271 0.88186 0.90047 0.96582 0.91437 0.92178 0.91371 0.92973 0.92014 0.90477 0.89773 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.23 10.20 71.98 0.73 -3.50 16 2 C 0.11 3.74 6.41 86.38 0.55 4.30 16 3 N -1.00 -42.32 2.83 -519.84 -1.47 -43.79 16 4 C 0.28 14.16 5.08 85.63 0.43 14.59 16 5 C -0.55 -31.73 9.38 25.60 0.24 -31.49 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.01 0.83 5.46 84.66 0.46 1.30 16 8 N -0.92 -54.05 13.29 21.45 0.28 -53.76 16 9 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 S 2.79 114.80 5.88 -56.49 -0.33 114.47 16 14 O -1.02 -52.06 16.67 -128.00 -2.13 -54.20 16 15 O -1.00 -40.35 12.97 -128.00 -1.66 -42.01 16 16 N -1.00 -30.64 2.68 -516.09 -1.38 -32.03 16 17 C 0.09 2.49 8.16 127.77 1.04 3.53 16 18 C 0.15 3.53 3.08 45.07 0.14 3.67 16 19 H 0.09 1.88 6.67 -2.39 -0.02 1.86 16 20 C -0.11 -1.86 5.08 30.65 0.16 -1.70 16 21 C 0.02 0.31 4.19 86.33 0.36 0.68 16 22 N -0.53 -10.71 4.64 -871.13 -4.04 -14.75 16 23 C 0.04 0.81 5.08 86.30 0.44 1.25 16 24 C -0.15 -2.04 9.16 71.98 0.66 -1.38 16 25 C 0.08 2.06 2.26 44.94 0.10 2.16 16 26 H 0.01 0.23 7.69 -2.39 -0.02 0.22 16 27 C -0.15 -3.19 8.78 71.98 0.63 -2.55 16 28 C -0.15 -3.87 4.74 30.65 0.15 -3.72 16 29 H 0.06 1.48 6.67 -2.39 -0.02 1.46 16 30 H 0.05 1.45 7.92 -2.39 -0.02 1.43 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.55 8.13 -2.39 -0.02 2.53 16 33 H 0.09 2.82 6.80 -2.39 -0.02 2.81 16 34 H 0.03 1.46 7.88 -2.38 -0.02 1.44 16 35 H 0.01 0.76 6.49 -2.39 -0.02 0.74 16 36 H 0.27 14.70 8.31 -92.72 -0.77 13.93 16 37 H 0.05 1.46 6.84 -2.38 -0.02 1.45 16 38 H 0.05 1.55 6.83 -2.39 -0.02 1.54 16 39 H 0.12 2.39 4.83 -2.39 -0.01 2.38 16 40 H 0.09 1.33 6.88 -2.39 -0.02 1.31 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.05 3.81 -2.39 -0.01 1.04 16 43 H 0.10 1.45 5.81 -2.39 -0.01 1.44 16 44 H 0.08 1.37 6.84 -2.39 -0.02 1.36 16 45 H 0.02 0.34 8.08 -2.39 -0.02 0.32 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.81 6.21 -2.39 -0.01 0.80 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.23 6.55 -2.39 -0.02 1.21 16 51 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.08 2.61 5.12 -2.39 -0.01 2.60 16 53 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.40 396.06 -1.72 -73.13 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.89 Total: 18.51 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 6.10 Total: -12.87 kcal Atomic # 7 Polarization: -137.73 SS G_CDS: -6.62 Total: -144.34 kcal Atomic # 8 Polarization: -92.41 SS G_CDS: -3.79 Total: -96.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 114.80 SS G_CDS: -0.33 Total: 114.47 kcal Total: -71.40 -1.72 -73.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337083723.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.696 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds