Wall clock time and date at job start Wed Apr 1 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47011 * 2 1 4 4 C 1.46502 * 120.00131 * 275.00027 * 3 2 1 5 5 C 1.50702 * 109.47036 * 275.00130 * 4 3 2 6 6 H 1.07998 * 119.99857 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99893 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00092 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00022 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47351 * 90.00315 * 9 7 5 11 11 H 1.48502 * 109.47292 * 210.00096 * 9 7 5 12 12 H 1.48500 * 109.47193 * 329.99944 * 9 7 5 13 13 S 1.65596 * 120.00156 * 94.99900 * 3 2 1 14 14 O 1.42098 * 106.40345 * 336.46084 * 13 3 2 15 15 O 1.42094 * 106.40745 * 203.53916 * 13 3 2 16 16 N 1.65606 * 107.21969 * 89.99975 * 13 3 2 17 17 C 1.46499 * 120.00003 * 89.99706 * 16 13 3 18 18 C 1.46502 * 119.99935 * 270.00204 * 16 13 3 19 19 H 1.08999 * 109.52296 * 0.12382 * 18 16 13 20 20 C 1.53108 * 109.52456 * 239.99656 * 18 16 13 21 21 C 1.53041 * 109.28096 * 182.44389 * 20 18 16 22 22 N 1.46839 * 109.52231 * 59.17833 * 21 20 18 23 23 C 1.46905 * 110.99744 * 174.16474 * 22 21 20 24 24 C 1.52998 * 109.47108 * 66.04523 * 23 22 21 25 25 C 1.46850 * 111.19889 * 298.25724 * 22 21 20 26 26 H 1.08996 * 109.46206 * 301.73714 * 25 22 21 27 27 C 1.53002 * 109.46223 * 181.75837 * 25 22 21 28 28 C 1.53034 * 109.51834 * 61.74675 * 25 22 21 29 29 H 1.08992 * 109.47241 * 60.00277 * 1 2 3 30 30 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46863 * 299.99795 * 1 2 3 32 32 H 1.09002 * 109.46713 * 239.99681 * 2 1 3 33 33 H 1.09003 * 109.46772 * 119.99719 * 2 1 3 34 34 H 1.09006 * 109.46973 * 34.99949 * 4 3 2 35 35 H 1.08996 * 109.47498 * 155.00006 * 4 3 2 36 36 H 0.96996 * 120.00240 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47391 * 270.00374 * 17 16 13 38 38 H 1.09001 * 109.46813 * 150.00430 * 17 16 13 39 39 H 1.09004 * 109.47041 * 30.00557 * 17 16 13 40 40 H 1.09004 * 109.50530 * 302.38273 * 20 18 16 41 41 H 1.08998 * 109.50269 * 62.49897 * 20 18 16 42 42 H 1.09001 * 109.46074 * 179.19626 * 21 20 18 43 43 H 1.08994 * 109.45622 * 299.17169 * 21 20 18 44 44 H 1.09001 * 109.47098 * 186.04750 * 23 22 21 45 45 H 1.09000 * 109.46966 * 306.04313 * 23 22 21 46 46 H 1.09000 * 109.46767 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47126 * 299.99651 * 24 23 22 48 48 H 1.08994 * 109.47208 * 60.00425 * 24 23 22 49 49 H 1.09008 * 109.46515 * 60.00467 * 27 25 22 50 50 H 1.08993 * 109.47106 * 179.97438 * 27 25 22 51 51 H 1.08994 * 109.47365 * 300.00428 * 27 25 22 52 52 H 1.09001 * 109.49843 * 180.88050 * 28 25 22 53 53 H 1.08999 * 109.50542 * 60.76570 * 28 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7888 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8525 2.3606 -3.0848 8 7 5.0187 2.0811 -3.6248 9 14 2.6802 3.5312 -3.9478 10 1 2.9434 4.9200 -3.4930 11 1 2.8852 3.4440 -5.4161 12 1 1.2801 3.1601 -3.6206 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5185 1.1999 16 7 4.0144 1.8137 1.7137 17 6 5.0373 2.7325 1.2078 18 6 4.4090 0.6238 2.4718 19 1 3.5193 0.0646 2.7611 20 6 5.1772 1.0479 3.7265 21 6 5.6393 -0.2002 4.4821 22 7 6.4991 -1.0111 3.6107 23 6 7.0731 -2.1459 4.3461 24 6 5.9553 -3.1084 4.7521 25 6 5.7689 -1.4696 2.4220 26 1 4.8992 -2.0492 2.7312 27 6 6.6867 -2.3447 1.5660 28 6 5.3108 -0.2594 1.6050 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3617 1.8097 -1.9453 35 1 2.0922 3.1802 -1.0756 36 1 5.2702 2.4830 -4.4710 37 1 5.3432 2.4213 0.2090 38 1 5.9004 2.7174 1.8734 39 1 4.6292 3.7424 1.1647 40 1 6.0452 1.6412 3.4387 41 1 4.5264 1.6417 4.3683 42 1 6.1989 0.0984 5.3686 43 1 4.7702 -0.7859 4.7814 44 1 7.7880 -2.6672 3.7095 45 1 7.5806 -1.7809 5.2390 46 1 6.3812 -3.9502 5.2982 47 1 5.2405 -2.5871 5.3888 48 1 5.4479 -3.4734 3.8592 49 1 7.0123 -3.2072 2.1476 50 1 6.1447 -2.6854 0.6839 51 1 7.5567 -1.7654 1.2570 52 1 4.7554 -0.5996 0.7310 53 1 6.1809 0.3133 1.2837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337083725.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:10 Heat of formation + Delta-G solvation = -92.416288 kcal Electronic energy + Delta-G solvation = -32180.554328 eV Core-core repulsion = 28213.144028 eV Total energy + Delta-G solvation = -3967.410300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77044 -38.42604 -37.76544 -37.57904 -36.93788 -34.63143 -33.61595 -33.31018 -31.81358 -29.95250 -28.92913 -28.06350 -27.21792 -24.92616 -24.57144 -23.46274 -23.15019 -21.86961 -20.11967 -19.78808 -19.05702 -18.64767 -18.36064 -17.47438 -16.91656 -16.55773 -16.38205 -16.03534 -15.79613 -15.43705 -15.14244 -14.95809 -14.65863 -14.52318 -14.44922 -14.16988 -13.83246 -13.74076 -13.65178 -13.51338 -13.50447 -13.22537 -13.12109 -13.09329 -12.95526 -12.83553 -12.78843 -12.62914 -12.55701 -12.52424 -12.22819 -12.14291 -12.09898 -11.89394 -11.79053 -11.65893 -11.57327 -11.40601 -11.16622 -10.72846 -9.95055 -9.73249 -9.14044 -8.24153 -6.26673 -0.35381 1.37116 1.41275 1.47326 1.89054 2.36993 2.48458 2.98740 3.10401 3.30441 3.63273 3.81936 3.91475 3.92444 4.07136 4.12614 4.30898 4.34744 4.36194 4.38692 4.42938 4.48151 4.53174 4.58031 4.64981 4.65843 4.73198 4.77106 4.84378 4.87589 4.92179 4.93901 4.96221 4.97258 5.01607 5.09601 5.11102 5.15652 5.21666 5.26378 5.31818 5.35540 5.40736 5.43553 5.50943 5.53178 5.63909 5.89418 6.22097 6.27192 6.36341 6.78372 7.36906 8.90350 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.004162 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.846592 B = 6726.465314 C = 7408.127464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.992 5.992 4 C 0.222 3.778 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.028 3.972 8 N -0.933 5.933 9 Si 0.916 3.084 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.247 1.247 13 S 2.790 3.210 14 O -0.998 6.998 15 O -1.012 7.012 16 N -0.995 5.995 17 C 0.095 3.905 18 C 0.148 3.852 19 H 0.086 0.914 20 C -0.122 4.122 21 C 0.061 3.939 22 N -0.541 5.541 23 C 0.048 3.952 24 C -0.190 4.190 25 C 0.088 3.912 26 H 0.047 0.953 27 C -0.143 4.143 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.057 0.943 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -9.578 15.433 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.832 5.832 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.171 1.171 13 S 2.800 3.200 14 O -0.982 6.982 15 O -0.997 6.997 16 N -0.834 5.834 17 C -0.051 4.051 18 C 0.043 3.957 19 H 0.104 0.896 20 C -0.161 4.161 21 C -0.067 4.067 22 N -0.266 5.266 23 C -0.079 4.079 24 C -0.249 4.249 25 C -0.021 4.021 26 H 0.065 0.935 27 C -0.200 4.200 28 C -0.153 4.153 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.057 0.943 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.075 0.925 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.178 -8.709 15.648 17.947 hybrid contribution -0.666 0.112 -1.057 1.254 sum 0.512 -8.597 14.592 16.943 Atomic orbital electron populations 1.22202 0.95270 1.03456 1.01704 1.21243 0.94957 0.81163 1.03005 1.57558 1.79307 1.24031 1.22269 1.19310 0.96850 0.91783 0.82307 1.21565 1.01487 1.27681 1.05752 0.92287 1.25504 0.96198 0.97610 0.97813 1.70000 1.22299 1.45517 1.19511 0.86189 0.81354 0.80237 0.78187 1.19931 1.20721 1.17068 1.01448 0.73280 0.72548 0.72683 1.93514 1.71247 1.76209 1.57254 1.93498 1.86697 1.33047 1.86428 1.57651 1.24240 1.34163 1.67354 1.21457 0.92117 0.91914 0.99584 1.21048 0.98398 0.84720 0.91579 0.89581 1.21936 1.00342 0.98501 0.95338 1.22046 0.95781 0.93303 0.95602 1.62169 1.35402 1.21831 1.07152 1.22251 0.96904 0.90357 0.98429 1.22407 1.00089 1.00725 1.01653 1.21513 0.95503 0.94254 0.90843 0.93539 1.21858 0.99549 0.99298 0.99301 1.21925 0.99459 0.96310 0.97611 0.92639 0.89056 0.93299 0.90234 0.90389 0.93839 0.95219 0.92580 0.93520 0.88721 0.91660 0.90298 0.90977 0.88754 0.94280 0.89932 0.89834 0.90956 0.92836 0.92935 0.90804 0.92490 0.92585 0.92458 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 10.24 71.98 0.74 -4.03 16 2 C 0.12 4.00 6.06 86.38 0.52 4.52 16 3 N -0.99 -39.51 2.82 -519.83 -1.47 -40.98 16 4 C 0.22 10.21 4.50 85.63 0.39 10.59 16 5 C -0.53 -27.42 9.77 25.60 0.25 -27.17 16 6 H 0.06 3.31 7.95 -2.91 -0.02 3.29 16 7 C 0.03 1.53 5.47 84.65 0.46 1.99 16 8 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 9 Si 0.92 42.20 27.47 68.60 1.88 44.09 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.25 -10.60 6.54 99.48 0.65 -9.94 16 13 S 2.79 110.39 6.06 -56.49 -0.34 110.05 16 14 O -1.00 -39.07 15.68 -128.00 -2.01 -41.08 16 15 O -1.01 -46.37 15.29 -128.00 -1.96 -48.33 16 16 N -0.99 -34.17 3.14 -516.10 -1.62 -35.79 16 17 C 0.09 3.27 9.67 127.77 1.24 4.50 16 18 C 0.15 4.25 2.58 45.07 0.12 4.37 16 19 H 0.09 2.51 6.92 -2.39 -0.02 2.49 16 20 C -0.12 -2.86 5.40 30.64 0.17 -2.70 16 21 C 0.06 1.18 5.05 86.33 0.44 1.61 16 22 N -0.54 -10.82 4.69 -871.12 -4.09 -14.91 16 23 C 0.05 0.73 5.51 86.30 0.48 1.21 16 24 C -0.19 -2.67 9.11 71.98 0.66 -2.01 16 25 C 0.09 1.97 1.84 44.94 0.08 2.05 16 26 H 0.05 1.03 6.61 -2.39 -0.02 1.01 16 27 C -0.14 -2.97 8.68 71.98 0.63 -2.34 16 28 C -0.11 -3.21 4.69 30.65 0.14 -3.06 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 33 H 0.08 2.30 7.61 -2.39 -0.02 2.29 16 34 H 0.04 1.93 7.16 -2.38 -0.02 1.91 16 35 H 0.03 1.44 6.34 -2.39 -0.02 1.43 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.05 1.88 7.86 -2.39 -0.02 1.86 16 38 H 0.09 2.64 6.39 -2.39 -0.02 2.63 16 39 H 0.06 2.37 7.02 -2.38 -0.02 2.35 16 40 H 0.08 1.86 6.58 -2.39 -0.02 1.85 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 43 H 0.04 0.75 6.75 -2.39 -0.02 0.73 16 44 H 0.08 1.22 6.32 -2.39 -0.02 1.20 16 45 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 0.79 6.68 -2.39 -0.02 0.77 16 48 H 0.05 0.82 6.23 -2.39 -0.01 0.81 16 49 H 0.07 1.24 6.07 -2.38 -0.01 1.23 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.07 2.06 7.59 -2.39 -0.02 2.04 16 Total: -1.00 -64.52 406.21 -2.19 -66.71 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.81 Total: 24.77 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 6.29 Total: -10.45 kcal Atomic # 7 Polarization: -138.87 SS G_CDS: -6.88 Total: -145.75 kcal Atomic # 8 Polarization: -85.45 SS G_CDS: -3.96 Total: -89.41 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.09 kcal Atomic # 16 Polarization: 110.39 SS G_CDS: -0.34 Total: 110.05 kcal Total: -64.52 -2.19 -66.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337083725.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.705 kcal (2) G-P(sol) polarization free energy of solvation -64.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds