Wall clock time and date at job start Wed Apr 1 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.47247 * 2 1 4 4 C 1.46846 * 110.99642 * 66.28393 * 3 2 1 5 5 C 1.53035 * 109.52168 * 185.83924 * 4 3 2 6 6 C 1.53126 * 109.27749 * 300.81689 * 5 4 3 7 7 H 1.09000 * 109.52442 * 297.75497 * 6 5 4 8 8 N 1.46500 * 109.52431 * 177.55905 * 6 5 4 9 9 C 1.46498 * 119.99969 * 300.00582 * 8 6 5 10 10 S 1.65600 * 120.00058 * 120.00053 * 8 6 5 11 11 O 1.42098 * 106.40403 * 203.54332 * 10 8 6 12 12 O 1.42106 * 106.40330 * 336.46410 * 10 8 6 13 13 N 1.65596 * 107.21665 * 89.99861 * 10 8 6 14 14 C 1.46506 * 119.99717 * 89.99989 * 13 10 8 15 15 C 1.46497 * 120.00649 * 270.00376 * 13 10 8 16 16 H 1.09004 * 109.46668 * 359.97438 * 15 13 10 17 17 C 1.52999 * 109.47586 * 119.99699 * 15 13 10 18 18 C 1.50700 * 109.47139 * 240.00224 * 15 13 10 19 19 H 1.08000 * 120.00154 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99725 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00456 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99604 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.47043 * 90.00240 * 22 20 18 24 24 H 1.48500 * 109.47026 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47631 * 330.00094 * 22 20 18 26 26 C 1.53119 * 109.15720 * 57.65348 * 6 5 4 27 27 C 1.46847 * 110.99671 * 190.48839 * 3 2 1 28 28 H 1.08999 * 109.46704 * 294.17949 * 27 3 2 29 29 C 1.53002 * 109.46006 * 54.15137 * 27 3 2 30 30 H 1.09003 * 109.46605 * 300.00053 * 1 2 3 31 31 H 1.09002 * 109.47107 * 59.99109 * 1 2 3 32 32 H 1.09000 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46984 * 240.00332 * 2 1 3 34 34 H 1.08997 * 109.46678 * 120.00298 * 2 1 3 35 35 H 1.09002 * 109.46412 * 305.85500 * 4 3 2 36 36 H 1.08998 * 109.46437 * 65.83020 * 4 3 2 37 37 H 1.08993 * 109.50654 * 60.76273 * 5 4 3 38 38 H 1.09002 * 109.50527 * 180.88207 * 5 4 3 39 39 H 1.08997 * 109.47266 * 89.99756 * 9 8 6 40 40 H 1.09006 * 109.46922 * 209.99657 * 9 8 6 41 41 H 1.09005 * 109.47141 * 329.99459 * 9 8 6 42 42 H 1.09003 * 109.46969 * 90.00328 * 14 13 10 43 43 H 1.08998 * 109.47398 * 209.99688 * 14 13 10 44 44 H 1.08992 * 109.47170 * 330.00499 * 14 13 10 45 45 H 1.09002 * 109.47112 * 180.02562 * 17 15 13 46 46 H 1.08999 * 109.47206 * 300.00296 * 17 15 13 47 47 H 1.08999 * 109.46674 * 60.00248 * 17 15 13 48 48 H 0.96994 * 120.00465 * 179.97438 * 21 20 18 49 49 H 1.09006 * 109.50022 * 62.29201 * 26 6 5 50 50 H 1.08998 * 109.50575 * 182.35988 * 26 6 5 51 51 H 1.08993 * 109.47142 * 52.49677 * 29 27 3 52 52 H 1.09003 * 109.46619 * 172.49217 * 29 27 3 53 53 H 1.08995 * 109.47269 * 292.49065 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6753 2.0649 1.2552 5 6 2.0702 3.5405 1.1626 6 6 3.5751 3.6456 0.8998 7 1 4.1221 3.2080 1.7349 8 7 3.9491 5.0543 0.7522 9 6 3.3477 5.8644 -0.3100 10 16 5.0517 5.7309 1.7860 11 8 4.8036 7.1301 1.7776 12 8 5.0276 4.9444 2.9693 13 7 6.5497 5.5175 1.1133 14 6 7.0987 6.5326 0.2107 15 6 7.3260 4.3137 1.4205 16 1 6.7596 3.6807 2.1036 17 6 7.6084 3.5452 0.1280 18 6 8.6297 4.7077 2.0657 19 1 8.8573 5.7506 2.2301 20 6 9.5317 3.7368 2.4461 21 7 9.2543 2.4669 2.2464 22 14 11.1479 4.2253 3.2453 23 1 10.9725 4.2882 4.7186 24 1 12.1883 3.2191 2.9132 25 1 11.5678 5.5569 2.7395 26 6 3.9145 2.8884 -0.3871 27 6 3.4661 1.4317 -0.2496 28 1 3.9936 0.9664 0.5831 29 6 3.7852 0.6760 -1.5411 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6019 1.9863 1.4281 36 1 2.2113 1.5967 2.0808 37 1 1.5243 4.0128 0.3459 38 1 1.8287 4.0414 2.1001 39 1 2.4374 6.3341 0.0625 40 1 4.0526 6.6351 -0.6223 41 1 3.1059 5.2269 -1.1605 42 1 7.6631 7.2649 0.7879 43 1 7.7579 6.0556 -0.5146 44 1 6.2837 7.0324 -0.3126 45 1 8.1856 2.6493 0.3567 46 1 6.6655 3.2602 -0.3387 47 1 8.1749 4.1784 -0.5548 48 1 9.8890 1.7839 2.5137 49 1 3.3976 3.3505 -1.2282 50 1 4.9905 2.9241 -0.5573 51 1 3.1577 1.0545 -2.3480 52 1 4.8344 0.8221 -1.7977 53 1 3.5908 -0.3869 -1.3976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337977131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:14 Heat of formation + Delta-G solvation = -89.622559 kcal Electronic energy + Delta-G solvation = -32063.036767 eV Core-core repulsion = 28095.747612 eV Total energy + Delta-G solvation = -3967.289154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.65681 -38.40733 -37.90490 -37.49657 -36.90435 -34.53958 -33.91665 -33.23346 -30.94690 -30.16311 -28.01992 -27.46174 -27.24664 -26.92136 -24.89562 -22.85965 -22.61143 -21.82368 -20.56457 -19.83739 -18.82614 -18.60201 -18.15962 -17.44538 -16.96488 -16.63981 -16.32528 -15.76634 -15.60229 -15.38331 -15.15540 -14.95230 -14.87991 -14.63137 -14.48114 -14.17459 -13.76467 -13.62006 -13.38226 -13.31439 -13.24969 -13.17848 -13.01962 -12.94797 -12.90753 -12.86246 -12.68546 -12.62051 -12.59961 -12.47201 -12.25327 -12.15338 -12.10049 -11.92709 -11.89648 -11.72771 -11.33202 -11.27452 -11.07395 -10.51650 -9.97472 -9.64146 -9.27662 -8.12906 -6.26420 -0.38620 1.40000 1.42250 1.51122 1.99068 2.40774 2.54864 2.90476 3.15040 3.32225 3.62211 3.79821 3.90138 4.00034 4.07840 4.15239 4.27851 4.35366 4.42331 4.49866 4.52906 4.56173 4.65709 4.67273 4.69537 4.75826 4.79079 4.81506 4.85048 4.88755 4.92090 4.99728 5.03693 5.07359 5.09872 5.13807 5.14613 5.16520 5.21520 5.32526 5.38767 5.41545 5.48764 5.58297 5.61872 5.82387 5.88111 6.14509 6.16975 6.20580 6.30077 6.80715 7.42396 8.90803 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.004046 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.608274 B = 6919.492410 C = 8183.226241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 N -0.528 5.528 4 C 0.055 3.945 5 C -0.115 4.115 6 C 0.146 3.854 7 H 0.060 0.940 8 N -0.998 5.998 9 C 0.088 3.912 10 S 2.785 3.215 11 O -1.007 7.007 12 O -1.017 7.017 13 N -0.998 5.998 14 C 0.105 3.895 15 C 0.278 3.722 16 H 0.019 0.981 17 C -0.134 4.134 18 C -0.541 4.541 19 H 0.053 0.947 20 C 0.020 3.980 21 N -0.911 5.911 22 Si 0.952 3.048 23 H -0.283 1.283 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.116 4.116 27 C 0.081 3.919 28 H 0.020 0.980 29 C -0.139 4.139 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.100 0.900 36 H 0.018 0.982 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.264 0.736 49 H 0.095 0.905 50 H 0.066 0.934 51 H 0.074 0.926 52 H 0.059 0.941 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.465 -2.632 -11.183 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 N -0.254 5.254 4 C -0.074 4.074 5 C -0.154 4.154 6 C 0.040 3.960 7 H 0.078 0.922 8 N -0.839 5.839 9 C -0.056 4.056 10 S 2.796 3.204 11 O -0.991 6.991 12 O -1.001 7.001 13 N -0.840 5.840 14 C -0.041 4.041 15 C 0.173 3.827 16 H 0.037 0.963 17 C -0.194 4.194 18 C -0.581 4.581 19 H 0.071 0.929 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.778 3.222 23 H -0.210 1.210 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.155 4.155 27 C -0.028 4.028 28 H 0.038 0.962 29 C -0.196 4.196 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.037 0.963 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.078 0.922 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.807 -2.073 -10.721 20.042 hybrid contribution 1.811 -0.463 1.416 2.345 sum -14.996 -2.536 -9.304 17.829 Atomic orbital electron populations 1.21758 0.93640 1.02179 1.02353 1.22262 0.97001 0.88321 1.01102 1.62126 1.13071 1.16349 1.33813 1.22123 1.01848 0.93419 0.89961 1.21878 0.93974 0.96653 1.02922 1.20972 0.96986 0.79549 0.98501 0.92187 1.57822 1.57764 1.19496 1.48798 1.21674 0.98863 0.94767 0.90346 1.01570 0.72914 0.72289 0.73591 1.93499 1.85790 1.32340 1.87428 1.93523 1.87231 1.72266 1.47087 1.57671 1.33133 1.30633 1.62522 1.21338 0.99750 0.89913 0.93081 1.18338 0.89969 0.80831 0.93535 0.96315 1.21967 0.99539 1.01119 0.96727 1.21663 1.03094 0.93241 1.40064 0.92855 1.25595 1.01360 0.94934 0.96092 1.69962 1.37169 1.00084 1.47775 0.85651 0.79658 0.78381 0.78518 1.20955 1.20196 1.19176 1.22046 1.01493 0.94250 0.97675 1.21562 0.87795 0.95541 0.97931 0.96245 1.21837 1.01884 0.99753 0.96139 0.92856 0.91758 0.91267 0.89331 0.95932 0.88204 0.96340 0.88678 0.91822 0.91643 0.91072 0.88348 0.94319 0.90248 0.90201 0.91598 0.94009 0.93944 0.92647 0.88631 0.91554 0.90655 0.92187 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.85 71.98 0.71 -1.22 16 2 C 0.04 0.70 5.41 86.30 0.47 1.17 16 3 N -0.53 -10.85 4.49 -871.10 -3.91 -14.76 16 4 C 0.06 1.20 5.29 86.33 0.46 1.66 16 5 C -0.11 -2.70 5.41 30.65 0.17 -2.54 16 6 C 0.15 4.28 2.58 45.07 0.12 4.39 16 7 H 0.06 2.22 6.92 -2.39 -0.02 2.21 16 8 N -1.00 -30.08 3.14 -516.08 -1.62 -31.70 16 9 C 0.09 1.90 9.31 127.77 1.19 3.09 16 10 S 2.78 113.34 6.01 -56.49 -0.34 113.00 16 11 O -1.01 -42.27 16.28 -128.00 -2.08 -44.36 16 12 O -1.02 -50.27 15.27 -128.00 -1.95 -52.22 16 13 N -1.00 -41.89 3.12 -520.44 -1.62 -43.52 16 14 C 0.10 3.65 9.53 127.77 1.22 4.87 16 15 C 0.28 13.75 2.62 44.25 0.12 13.87 16 16 H 0.02 1.08 6.91 -2.39 -0.02 1.06 16 17 C -0.13 -5.93 8.95 71.98 0.64 -5.29 16 18 C -0.54 -29.76 8.37 25.60 0.21 -29.55 16 19 H 0.05 2.94 7.65 -2.91 -0.02 2.92 16 20 C 0.02 1.11 5.30 84.66 0.45 1.56 16 21 N -0.91 -51.18 11.32 21.45 0.24 -50.93 16 22 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.12 -2.90 4.67 30.65 0.14 -2.76 16 27 C 0.08 1.91 2.44 44.94 0.11 2.02 16 28 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 29 C -0.14 -2.65 8.53 71.98 0.61 -2.04 16 30 H 0.05 0.74 6.44 -2.39 -0.02 0.72 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.39 5.80 -2.39 -0.01 1.37 16 34 H 0.02 0.43 8.12 -2.39 -0.02 0.42 16 35 H 0.10 1.77 6.23 -2.39 -0.01 1.75 16 36 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.09 1.88 7.60 -2.39 -0.02 1.86 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.49 7.37 -2.38 -0.02 1.47 16 41 H 0.10 1.61 6.37 -2.38 -0.02 1.59 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 44 H 0.08 2.23 7.37 -2.39 -0.02 2.21 16 45 H 0.07 3.29 6.07 -2.39 -0.01 3.27 16 46 H 0.04 1.58 5.59 -2.39 -0.01 1.56 16 47 H 0.04 1.75 6.66 -2.39 -0.02 1.74 16 48 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.10 1.99 6.57 -2.38 -0.02 1.98 16 50 H 0.07 1.89 5.59 -2.39 -0.01 1.88 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 53 H 0.06 1.10 6.56 -2.39 -0.02 1.08 16 Total: -1.00 -68.56 400.57 -1.77 -70.32 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.88 Total: 19.20 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 6.61 Total: -10.76 kcal Atomic # 7 Polarization: -134.00 SS G_CDS: -6.91 Total: -140.90 kcal Atomic # 8 Polarization: -92.54 SS G_CDS: -4.04 Total: -96.58 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 113.34 SS G_CDS: -0.34 Total: 113.00 kcal Total: -68.56 -1.77 -70.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337977131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.301 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds