Wall clock time and date at job start Wed Apr 1 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46907 * 109.47359 * 2 1 4 4 C 1.46844 * 110.99731 * 66.04370 * 3 2 1 5 5 C 1.53040 * 109.52181 * 174.16585 * 4 3 2 6 6 C 1.53114 * 109.28036 * 59.17596 * 5 4 3 7 7 H 1.08998 * 109.52440 * 182.44277 * 6 5 4 8 8 N 1.46499 * 109.52435 * 62.25183 * 6 5 4 9 9 C 1.46502 * 120.00029 * 242.74553 * 8 6 5 10 10 S 1.65599 * 119.99767 * 62.74467 * 8 6 5 11 11 O 1.42099 * 106.40250 * 203.53918 * 10 8 6 12 12 O 1.42098 * 106.40529 * 336.45803 * 10 8 6 13 13 N 1.65600 * 107.21949 * 90.00211 * 10 8 6 14 14 C 1.46503 * 119.99875 * 269.99851 * 13 10 8 15 15 C 1.46497 * 119.99953 * 89.99967 * 13 10 8 16 16 H 1.08994 * 109.47293 * 359.97438 * 15 13 10 17 17 C 1.53002 * 109.46757 * 239.99995 * 15 13 10 18 18 C 1.50704 * 109.47290 * 120.00064 * 15 13 10 19 19 H 1.08004 * 119.99591 * 25.08912 * 18 15 13 20 20 C 1.37869 * 119.99976 * 205.08951 * 18 15 13 21 21 N 1.31519 * 119.99764 * 185.01793 * 20 18 15 22 22 Si 1.86801 * 120.00359 * 5.01787 * 20 18 15 23 23 H 1.48507 * 109.47105 * 94.90065 * 22 20 18 24 24 H 1.48494 * 109.47302 * 214.90453 * 22 20 18 25 25 H 1.48500 * 109.46633 * 334.90241 * 22 20 18 26 26 C 1.53123 * 109.16107 * 302.34537 * 6 5 4 27 27 C 1.46843 * 110.99739 * 301.83575 * 3 2 1 28 28 H 1.08997 * 109.46466 * 65.81849 * 27 3 2 29 29 C 1.53004 * 109.46118 * 305.85271 * 27 3 2 30 30 H 1.09000 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47574 * 300.00634 * 1 2 3 32 32 H 1.09009 * 109.46648 * 60.00166 * 1 2 3 33 33 H 1.09002 * 109.47689 * 239.99755 * 2 1 3 34 34 H 1.09002 * 109.47019 * 119.99913 * 2 1 3 35 35 H 1.09005 * 109.46024 * 294.17535 * 4 3 2 36 36 H 1.08995 * 109.46911 * 54.15427 * 4 3 2 37 37 H 1.08993 * 109.50168 * 179.11928 * 5 4 3 38 38 H 1.09000 * 109.50043 * 299.19619 * 5 4 3 39 39 H 1.08996 * 109.47267 * 95.38020 * 9 8 6 40 40 H 1.09004 * 109.46587 * 215.37920 * 9 8 6 41 41 H 1.08995 * 109.47008 * 335.37803 * 9 8 6 42 42 H 1.09002 * 109.47114 * 89.99548 * 14 13 10 43 43 H 1.08994 * 109.47226 * 210.00014 * 14 13 10 44 44 H 1.09006 * 109.46759 * 329.99905 * 14 13 10 45 45 H 1.08991 * 109.47410 * 64.95544 * 17 15 13 46 46 H 1.09006 * 109.47018 * 184.95943 * 17 15 13 47 47 H 1.08999 * 109.47118 * 304.95292 * 17 15 13 48 48 H 0.97000 * 119.99643 * 179.97438 * 21 20 18 49 49 H 1.09000 * 109.50296 * 177.59414 * 26 6 5 50 50 H 1.08996 * 109.50613 * 297.67805 * 26 6 5 51 51 H 1.08999 * 109.47132 * 60.00365 * 29 27 3 52 52 H 1.09000 * 109.47084 * 180.02562 * 29 27 3 53 53 H 1.09008 * 109.47240 * 300.00119 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.3184 3.4528 1.2788 6 6 1.8234 4.2649 0.0788 7 1 2.3155 5.2374 0.0692 8 7 0.3734 4.4495 0.1771 9 6 -0.5077 3.8886 -0.8501 10 16 -0.2695 5.2923 1.4494 11 8 -1.6128 4.8495 1.5861 12 8 0.6834 5.2201 2.5011 13 7 -0.3454 6.8830 0.9955 14 6 0.7866 7.7748 1.2592 15 6 -1.5446 7.3985 0.3303 16 1 -2.2730 6.5952 0.2208 17 6 -1.1692 7.9378 -1.0514 18 6 -2.1404 8.5082 1.1578 19 1 -1.5148 9.0748 1.8317 20 6 -3.4838 8.8000 1.0546 21 7 -3.9845 9.8303 1.7009 22 14 -4.5931 7.7323 -0.0032 23 1 -5.2427 6.7008 0.8450 24 1 -5.6348 8.5783 -0.6389 25 1 -3.7834 7.0690 -1.0566 26 6 2.1569 3.5099 -1.2109 27 6 1.5133 2.1222 -1.1647 28 1 0.4312 2.2260 -1.0864 29 6 1.8606 1.3564 -2.4430 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5873 2.1709 1.3198 36 1 2.0317 1.4810 2.0981 37 1 2.0461 3.9646 2.2018 38 1 3.4022 3.3488 1.2265 39 1 -0.8770 2.9173 -0.5212 40 1 -1.3498 4.5613 -1.0131 41 1 0.0480 3.7701 -1.7802 42 1 1.4706 7.7544 0.4107 43 1 0.4217 8.7911 1.4073 44 1 1.3099 7.4423 2.1557 45 1 -0.8204 7.1178 -1.6791 46 1 -2.0429 8.4005 -1.5105 47 1 -0.3770 8.6794 -0.9491 48 1 -4.9296 10.0358 1.6280 49 1 1.7691 4.0626 -2.0667 50 1 3.2380 3.4074 -1.3035 51 1 1.4015 0.3684 -2.4107 52 1 1.4852 1.9037 -3.3077 53 1 2.9428 1.2520 -2.5214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337977132.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:18 Heat of formation + Delta-G solvation = -64.898277 kcal Electronic energy + Delta-G solvation = -32701.741931 eV Core-core repulsion = 28735.524902 eV Total energy + Delta-G solvation = -3966.217029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.21597 -38.48790 -38.00197 -37.27253 -36.91010 -34.51648 -33.62859 -33.32284 -31.68325 -30.13016 -28.03206 -27.69573 -27.27499 -27.01815 -24.57862 -23.44879 -22.48010 -21.98415 -20.53193 -19.63538 -19.25522 -18.53204 -18.17550 -17.27332 -16.97946 -16.57524 -16.39623 -15.99282 -15.80599 -15.58265 -15.35464 -14.83223 -14.68368 -14.54369 -14.34503 -14.16490 -14.03744 -13.74211 -13.56934 -13.48705 -13.41328 -13.22474 -13.11869 -13.02783 -12.90090 -12.84930 -12.66782 -12.60131 -12.58368 -12.51946 -12.44240 -12.12922 -12.03881 -11.99864 -11.71077 -11.52515 -11.30543 -11.27124 -10.89819 -10.74386 -9.99251 -9.68158 -9.07889 -8.32980 -6.36264 -0.41472 1.28406 1.37214 1.41443 1.96877 2.30859 2.47980 3.01444 3.05489 3.30796 3.65050 3.80251 3.93110 4.03969 4.09808 4.13933 4.30843 4.33909 4.40706 4.44334 4.45399 4.48421 4.57250 4.60788 4.68765 4.75079 4.76748 4.79337 4.80679 4.84103 4.87003 4.89949 4.92781 4.96511 5.03537 5.10126 5.12002 5.14364 5.22918 5.26340 5.31238 5.36986 5.44327 5.50298 5.52657 5.56946 5.71596 5.98174 6.20180 6.29208 6.32795 6.69105 7.28688 8.83223 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003957 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.228292 B = 7074.903710 C = 7431.115103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 N -0.528 5.528 4 C 0.060 3.940 5 C -0.161 4.161 6 C 0.150 3.850 7 H 0.087 0.913 8 N -0.995 5.995 9 C 0.082 3.918 10 S 2.783 3.217 11 O -1.019 7.019 12 O -0.995 6.995 13 N -0.994 5.994 14 C 0.093 3.907 15 C 0.239 3.761 16 H 0.042 0.958 17 C -0.141 4.141 18 C -0.523 4.523 19 H 0.047 0.953 20 C 0.020 3.980 21 N -0.940 5.940 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.274 1.274 25 H -0.225 1.225 26 C -0.104 4.104 27 C 0.044 3.956 28 H 0.066 0.934 29 C -0.142 4.142 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.267 0.733 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.059 0.941 52 H 0.070 0.930 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 -18.345 -11.832 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.080 4.080 3 N -0.253 5.253 4 C -0.069 4.069 5 C -0.200 4.200 6 C 0.045 3.955 7 H 0.105 0.895 8 N -0.837 5.837 9 C -0.063 4.063 10 S 2.795 3.205 11 O -1.003 7.003 12 O -0.979 6.979 13 N -0.835 5.835 14 C -0.053 4.053 15 C 0.134 3.866 16 H 0.060 0.940 17 C -0.201 4.201 18 C -0.563 4.563 19 H 0.066 0.934 20 C -0.178 4.178 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.211 1.211 24 H -0.200 1.200 25 H -0.148 1.148 26 C -0.143 4.143 27 C -0.064 4.064 28 H 0.083 0.917 29 C -0.199 4.199 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.030 0.970 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.115 0.885 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.398 -18.617 -11.006 26.549 hybrid contribution -2.001 0.301 0.286 2.044 sum 13.397 -18.317 -10.719 25.097 Atomic orbital electron populations 1.22443 0.98686 1.02685 1.01297 1.22249 0.92495 0.89850 1.03395 1.62250 1.59158 1.02191 1.01676 1.21934 0.96851 0.95285 0.92794 1.22554 1.02317 0.95268 0.99902 1.21121 0.77524 0.99623 0.97232 0.89548 1.57808 1.14766 1.68689 1.42473 1.21967 0.93438 0.97909 0.92991 1.01734 0.71948 0.72875 0.73963 1.93521 1.38652 1.81748 1.86347 1.93429 1.63011 1.86779 1.54682 1.57595 1.24348 1.26047 1.75461 1.21478 0.87119 0.95477 1.01190 1.18919 0.82692 0.93776 0.91221 0.94033 1.22160 1.01304 1.00861 0.95757 1.21479 0.94294 1.16318 1.24174 0.93437 1.25718 0.99452 0.95917 0.96762 1.70025 1.14242 1.28923 1.44825 0.86253 0.79802 0.79416 0.80807 1.21125 1.19963 1.14755 1.21853 1.02764 0.94133 0.95530 1.22406 0.99209 0.93646 0.91094 0.91671 1.21873 1.02497 1.00083 0.95463 0.91038 0.94607 0.92212 0.88829 0.90919 0.97017 0.90922 0.89416 0.88641 0.92874 0.92759 0.86495 0.90467 0.91747 0.91177 0.92009 0.93388 0.92074 0.92406 0.89017 0.88538 0.92199 0.91082 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 9.11 71.98 0.66 -2.61 16 2 C 0.05 0.75 5.51 86.30 0.48 1.22 16 3 N -0.53 -9.59 4.69 -871.10 -4.09 -13.68 16 4 C 0.06 1.37 4.90 86.33 0.42 1.79 16 5 C -0.16 -3.76 5.46 30.65 0.17 -3.59 16 6 C 0.15 3.18 3.14 45.07 0.14 3.32 16 7 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 8 N -1.00 -26.68 2.68 -516.11 -1.38 -28.06 16 9 C 0.08 1.89 8.11 127.77 1.04 2.93 16 10 S 2.78 105.63 6.00 -56.49 -0.34 105.30 16 11 O -1.02 -47.33 15.88 -128.00 -2.03 -49.36 16 12 O -1.00 -39.01 13.09 -128.00 -1.68 -40.68 16 13 N -0.99 -39.09 3.12 -520.44 -1.62 -40.72 16 14 C 0.09 3.10 9.59 127.77 1.22 4.32 16 15 C 0.24 10.76 2.15 44.25 0.10 10.85 16 16 H 0.04 1.98 4.49 -2.39 -0.01 1.97 16 17 C -0.14 -5.19 8.84 71.98 0.64 -4.55 16 18 C -0.52 -29.18 8.69 25.60 0.22 -28.96 16 19 H 0.05 2.90 6.89 -2.91 -0.02 2.88 16 20 C 0.02 1.17 5.47 84.65 0.46 1.64 16 21 N -0.94 -58.34 13.96 21.44 0.30 -58.04 16 22 Si 0.91 43.87 26.35 68.60 1.81 45.68 16 23 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.23 -9.44 5.97 99.48 0.59 -8.85 16 26 C -0.10 -1.56 4.36 30.65 0.13 -1.43 16 27 C 0.04 0.69 1.18 44.94 0.05 0.75 16 28 H 0.07 1.16 2.24 -2.39 -0.01 1.16 16 29 C -0.14 -1.62 8.68 71.98 0.63 -1.00 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.03 0.76 6.68 -2.39 -0.02 0.75 16 32 H 0.06 0.99 6.23 -2.38 -0.01 0.98 16 33 H 0.09 1.18 6.32 -2.39 -0.02 1.16 16 34 H 0.07 1.12 8.06 -2.39 -0.02 1.10 16 35 H 0.01 0.32 6.30 -2.38 -0.02 0.30 16 36 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 37 H 0.09 2.58 5.00 -2.39 -0.01 2.57 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.24 6.84 -2.39 -0.02 1.23 16 40 H 0.05 1.41 7.98 -2.38 -0.02 1.39 16 41 H 0.12 1.85 4.82 -2.39 -0.01 1.84 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.06 2.41 6.63 -2.39 -0.02 2.40 16 44 H 0.07 2.26 7.02 -2.38 -0.02 2.24 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 1.83 6.90 -2.38 -0.02 1.81 16 47 H 0.06 2.12 7.51 -2.39 -0.02 2.10 16 48 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 49 H 0.09 1.11 6.90 -2.39 -0.02 1.10 16 50 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.06 0.66 6.07 -2.39 -0.01 0.65 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -72.44 385.55 -1.89 -74.34 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.79 Total: 20.55 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 6.35 Total: -15.31 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -6.80 Total: -140.50 kcal Atomic # 8 Polarization: -86.34 SS G_CDS: -3.71 Total: -90.05 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.81 Total: 45.68 kcal Atomic # 16 Polarization: 105.63 SS G_CDS: -0.34 Total: 105.30 kcal Total: -72.44 -1.89 -74.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337977132.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.437 kcal (2) G-P(sol) polarization free energy of solvation -72.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds