Wall clock time and date at job start Wed Apr 1 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46983 * 2 1 4 4 C 1.46846 * 110.99642 * 66.28457 * 3 2 1 5 5 C 1.53035 * 109.52168 * 185.83924 * 4 3 2 6 6 C 1.53126 * 109.27749 * 300.81689 * 5 4 3 7 7 H 1.09000 * 109.52442 * 297.75497 * 6 5 4 8 8 N 1.46500 * 109.52431 * 177.55905 * 6 5 4 9 9 C 1.46498 * 119.99969 * 300.00582 * 8 6 5 10 10 S 1.65600 * 120.00058 * 120.00053 * 8 6 5 11 11 O 1.42098 * 106.40403 * 203.54332 * 10 8 6 12 12 O 1.42106 * 106.40330 * 336.46410 * 10 8 6 13 13 N 1.65596 * 107.21665 * 89.99861 * 10 8 6 14 14 C 1.46497 * 120.00649 * 270.00376 * 13 10 8 15 15 C 1.46506 * 119.99717 * 89.99989 * 13 10 8 16 16 H 1.08996 * 109.47248 * 0.02562 * 15 13 10 17 17 C 1.53000 * 109.47081 * 239.99794 * 15 13 10 18 18 C 1.50707 * 109.46927 * 120.00241 * 15 13 10 19 19 H 1.08001 * 119.99871 * 359.97438 * 18 15 13 20 20 C 1.37877 * 120.00073 * 180.02562 * 18 15 13 21 21 N 1.31519 * 119.99641 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99980 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46972 * 60.00465 * 22 20 18 24 24 H 1.48499 * 109.46908 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47210 * 300.00058 * 22 20 18 26 26 C 1.53119 * 109.15720 * 57.65348 * 6 5 4 27 27 C 1.46847 * 110.99671 * 190.48904 * 3 2 1 28 28 H 1.08999 * 109.46704 * 294.17949 * 27 3 2 29 29 C 1.53002 * 109.46006 * 54.15137 * 27 3 2 30 30 H 1.09003 * 109.47063 * 299.99555 * 1 2 3 31 31 H 1.08999 * 109.47721 * 59.99452 * 1 2 3 32 32 H 1.09009 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47063 * 240.00445 * 2 1 3 34 34 H 1.08997 * 109.46863 * 120.00249 * 2 1 3 35 35 H 1.09002 * 109.46412 * 305.85500 * 4 3 2 36 36 H 1.08998 * 109.46437 * 65.83020 * 4 3 2 37 37 H 1.08993 * 109.50654 * 60.76273 * 5 4 3 38 38 H 1.09002 * 109.50527 * 180.88207 * 5 4 3 39 39 H 1.08997 * 109.47266 * 89.99756 * 9 8 6 40 40 H 1.09006 * 109.46922 * 209.99657 * 9 8 6 41 41 H 1.09005 * 109.47141 * 329.99459 * 9 8 6 42 42 H 1.08996 * 109.47565 * 89.99285 * 14 13 10 43 43 H 1.08995 * 109.47456 * 210.00453 * 14 13 10 44 44 H 1.09012 * 109.46877 * 330.00009 * 14 13 10 45 45 H 1.08996 * 109.46835 * 60.00428 * 17 15 13 46 46 H 1.09004 * 109.46856 * 179.97438 * 17 15 13 47 47 H 1.08991 * 109.47251 * 299.99960 * 17 15 13 48 48 H 0.96997 * 119.99232 * 179.97438 * 21 20 18 49 49 H 1.09006 * 109.50022 * 62.29201 * 26 6 5 50 50 H 1.08998 * 109.50575 * 182.35988 * 26 6 5 51 51 H 1.08993 * 109.47142 * 52.49677 * 29 27 3 52 52 H 1.09003 * 109.46619 * 172.49217 * 29 27 3 53 53 H 1.08995 * 109.47269 * 292.49065 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6751 2.0649 1.2552 5 6 2.0700 3.5405 1.1626 6 6 3.5748 3.6456 0.8998 7 1 4.1219 3.2081 1.7349 8 7 3.9488 5.0544 0.7522 9 6 3.3474 5.8645 -0.3100 10 16 5.0514 5.7311 1.7860 11 8 4.8032 7.1302 1.7776 12 8 5.0273 4.9445 2.9693 13 7 6.5494 5.5177 1.1132 14 6 7.3258 4.3140 1.4204 15 6 7.0983 6.5328 0.2107 16 1 6.3835 7.3487 0.1038 17 6 7.3663 5.9061 -1.1591 18 6 8.3877 7.0665 0.7797 19 1 8.7607 6.6877 1.7199 20 6 9.0907 8.0390 0.1007 21 7 8.6361 8.5006 -1.0439 22 14 10.6885 8.7010 0.8064 23 1 11.6630 7.5900 0.9523 24 1 11.2443 9.7307 -0.1078 25 1 10.4281 9.3089 2.1360 26 6 3.9143 2.8885 -0.3871 27 6 3.4660 1.4318 -0.2496 28 1 3.9935 0.9665 0.5831 29 6 3.7851 0.6761 -1.5411 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.6018 1.9863 1.4281 36 1 2.2111 1.5968 2.0808 37 1 1.5240 4.0128 0.3459 38 1 1.8285 4.0414 2.1001 39 1 2.4371 6.3341 0.0626 40 1 4.0522 6.6352 -0.6223 41 1 3.1056 5.2270 -1.1605 42 1 7.0901 3.5347 0.6957 43 1 8.3897 4.5456 1.3719 44 1 7.0750 3.9658 2.4226 45 1 6.4337 5.5201 -1.5707 46 1 7.7743 6.6615 -1.8307 47 1 8.0812 5.0904 -1.0519 48 1 9.1305 9.1850 -1.5213 49 1 3.3974 3.3506 -1.2283 50 1 4.9903 2.9242 -0.5573 51 1 3.1576 1.0545 -2.3480 52 1 4.8343 0.8223 -1.7977 53 1 3.5908 -0.3868 -1.3977 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337977134.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:25 Heat of formation + Delta-G solvation = -91.048080 kcal Electronic energy + Delta-G solvation = -31713.751600 eV Core-core repulsion = 27746.400631 eV Total energy + Delta-G solvation = -3967.350970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.64397 -38.40968 -37.88534 -37.49355 -36.90595 -34.52625 -33.90136 -33.21884 -30.92573 -30.17268 -28.00164 -27.36750 -27.23865 -27.01050 -24.86992 -22.82247 -22.56929 -21.87364 -20.55363 -19.81217 -18.85042 -18.63772 -18.08196 -17.44097 -16.96467 -16.65583 -16.29231 -15.73708 -15.58062 -15.33028 -15.14604 -14.93582 -14.73615 -14.61139 -14.43239 -14.26391 -13.80856 -13.62480 -13.43758 -13.27620 -13.21673 -13.14740 -13.01500 -12.93515 -12.92293 -12.74435 -12.71248 -12.64142 -12.60532 -12.50784 -12.23764 -12.13137 -12.11930 -11.93246 -11.90004 -11.73725 -11.29017 -11.26511 -11.18477 -10.50342 -9.97546 -9.64622 -9.22131 -8.12104 -6.25553 -0.37993 1.41962 1.44148 1.50952 1.98523 2.41575 2.54178 2.92946 3.16042 3.33195 3.62673 3.80844 3.91024 4.04101 4.08763 4.17847 4.29760 4.35830 4.41231 4.50833 4.54082 4.58988 4.65124 4.68699 4.72007 4.73042 4.78878 4.81957 4.88454 4.89853 4.94962 5.00862 5.01733 5.04791 5.10477 5.14925 5.15449 5.22761 5.23674 5.26388 5.38272 5.41868 5.50590 5.56844 5.60821 5.80884 5.88726 6.15403 6.20596 6.24145 6.30259 6.81400 7.43029 8.91811 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.003153 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.104823 B = 8876.926866 C = 9338.715819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.537 5.537 4 C 0.059 3.941 5 C -0.119 4.119 6 C 0.145 3.855 7 H 0.081 0.919 8 N -0.998 5.998 9 C 0.093 3.907 10 S 2.786 3.214 11 O -1.014 7.014 12 O -1.009 7.009 13 N -0.996 5.996 14 C 0.094 3.906 15 C 0.276 3.724 16 H 0.023 0.977 17 C -0.130 4.130 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.020 3.980 21 N -0.912 5.912 22 Si 0.953 3.047 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.116 4.116 27 C 0.084 3.916 28 H 0.037 0.963 29 C -0.141 4.141 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.094 0.906 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.265 0.735 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.064 0.936 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -18.505 -1.959 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.263 5.263 4 C -0.070 4.070 5 C -0.159 4.159 6 C 0.039 3.961 7 H 0.099 0.901 8 N -0.838 5.838 9 C -0.052 4.052 10 S 2.797 3.203 11 O -0.998 6.998 12 O -0.993 6.993 13 N -0.838 5.838 14 C -0.051 4.051 15 C 0.172 3.828 16 H 0.041 0.959 17 C -0.190 4.190 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.155 4.155 27 C -0.025 4.025 28 H 0.055 0.945 29 C -0.199 4.199 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.083 0.917 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.700 -17.671 -1.649 23.045 hybrid contribution 1.538 0.369 0.789 1.768 sum -13.162 -17.302 -0.860 21.756 Atomic orbital electron populations 1.21776 0.94211 1.02091 1.02160 1.22222 0.96600 0.88227 1.01297 1.62055 1.13600 1.16474 1.34203 1.22079 1.01794 0.93007 0.90087 1.21904 0.94371 0.96952 1.02678 1.21084 0.97049 0.79027 0.98902 0.90110 1.57830 1.57775 1.19801 1.48402 1.21527 0.98359 0.94686 0.90643 1.01535 0.73027 0.72184 0.73555 1.93534 1.85542 1.33452 1.87293 1.93477 1.87469 1.72102 1.46228 1.57620 1.32956 1.30133 1.63073 1.21431 0.98039 0.85464 1.00184 1.18375 0.93244 0.84353 0.86847 0.95914 1.21869 0.98885 0.99996 0.98248 1.21638 1.07704 1.21928 1.06872 0.92663 1.25611 1.00830 0.96359 0.95258 1.69964 1.40265 1.29336 1.15518 0.85688 0.80011 0.78356 0.78050 1.19084 1.20565 1.20615 1.21990 1.01490 0.94518 0.97525 1.21565 0.87688 0.95035 0.98191 0.94489 1.21860 1.01961 0.99855 0.96193 0.92855 0.92301 0.91271 0.89460 0.95183 0.88791 0.95178 0.89773 0.91741 0.91771 0.92868 0.88313 0.91568 0.90957 0.91362 0.94555 0.91581 0.94155 0.92589 0.89925 0.91189 0.91678 0.91740 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.85 71.98 0.71 -0.94 16 2 C 0.04 0.59 5.40 86.30 0.47 1.05 16 3 N -0.54 -9.00 4.49 -871.12 -3.91 -12.91 16 4 C 0.06 1.04 5.29 86.33 0.46 1.50 16 5 C -0.12 -2.51 5.41 30.65 0.17 -2.35 16 6 C 0.15 3.62 2.58 45.07 0.12 3.73 16 7 H 0.08 2.22 6.92 -2.39 -0.02 2.20 16 8 N -1.00 -30.32 3.14 -516.08 -1.62 -31.94 16 9 C 0.09 2.51 9.31 127.77 1.19 3.70 16 10 S 2.79 112.98 6.05 -56.49 -0.34 112.64 16 11 O -1.01 -49.65 15.78 -128.00 -2.02 -51.67 16 12 O -1.01 -42.30 15.31 -128.00 -1.96 -44.26 16 13 N -1.00 -41.64 3.12 -520.43 -1.62 -43.26 16 14 C 0.09 3.30 9.65 127.77 1.23 4.53 16 15 C 0.28 13.62 2.62 44.25 0.12 13.73 16 16 H 0.02 1.29 6.91 -2.39 -0.02 1.27 16 17 C -0.13 -5.80 8.97 71.98 0.65 -5.15 16 18 C -0.54 -29.57 7.99 25.60 0.20 -29.37 16 19 H 0.06 3.00 7.33 -2.91 -0.02 2.98 16 20 C 0.02 1.07 5.30 84.65 0.45 1.51 16 21 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 22 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 C -0.12 -2.42 4.67 30.65 0.14 -2.28 16 27 C 0.08 1.49 2.44 44.94 0.11 1.60 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 C -0.14 -2.04 8.53 71.98 0.61 -1.42 16 30 H 0.05 0.62 6.44 -2.39 -0.02 0.61 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.09 1.04 5.80 -2.39 -0.01 1.03 16 34 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 35 H 0.09 1.41 6.23 -2.39 -0.01 1.39 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.08 1.67 7.60 -2.39 -0.02 1.65 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.69 7.79 -2.38 -0.02 1.67 16 41 H 0.10 2.08 6.37 -2.38 -0.02 2.07 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 2.68 7.02 -2.39 -0.02 2.66 16 44 H 0.07 2.26 7.02 -2.38 -0.02 2.24 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 47 H 0.04 1.68 7.67 -2.39 -0.02 1.66 16 48 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.08 1.68 6.57 -2.38 -0.02 1.67 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 53 H 0.07 0.80 6.56 -2.39 -0.02 0.79 16 Total: -1.00 -66.98 406.39 -1.72 -68.70 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.87 Total: 18.32 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 6.62 Total: -10.15 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -6.91 Total: -139.06 kcal Atomic # 8 Polarization: -91.94 SS G_CDS: -3.98 Total: -95.92 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 112.98 SS G_CDS: -0.34 Total: 112.64 kcal Total: -66.98 -1.72 -68.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337977134.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.349 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds